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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|30260196|ref|NP_842573.1| chromosomal replication initiation protein (BA_0001) [Bacillus anthracis str. Ames] 446 COG1018 3-446 -121.000 42  [L] COG0593 ATPase involved in DNA replication initiation
CSGID 1-446 -135.000 100  IDP00004 Chromosomal replication initiator protein dnaA BA_0001 [Bacillus anthracis str. Ames]
H.sapiens 81-322 -11.800 18  sp|Q96S55|WRIP1_HUMAN ATPase WRNIP1 OS=Homo sapiens GN=WRNIP1 PE=1 SV=2 (Range: 151-450)
112-344 -13.500 15  sp|Q9NVI7|ATD3A_HUMAN ATPase family AAA domain-containing protein 3A OS=Homo sapiens GN=ATAD3A PE=1 SV=2 (Range: 301-600)
147-365 -15.500 16  sp|Q6PL18|ATAD2_HUMAN ATPase family AAA domain-containing protein 2 OS=Homo sapiens GN=ATAD2 PE=1 SV=1 (Range: 451-750)
147-420 -13.200 13  sp|Q13608|PEX6_HUMAN Peroxisome assembly factor 2 OS=Homo sapiens GN=PEX6 PE=1 SV=2 (Range: 451-750)
HGM_OVER 169-353 -3.560 HGC00816 gi|163609134|dbj|BABG01026932.1|1.0 TMP01075;
NEW_HUMAN_DOMAINS 179-376 -5.120 11  sp|Q6ZV50|RFX8_HUMAN DNA-binding protein RFX8 OS=Homo sapiens GN=RFX8 PE=2 SV=2 (Range: 148-329)
PDB1018 7-446 -121.000 37  2z4r_A mol:protein length:440 Chromosomal replication initiator protein dnaA
PfamA32U 5-68 -17.600 20  PF11638.8; DNAA_LAWIP/5-67; DnaA N-terminal domain
111-329 -101.000 72  PF00308.18; DNAA_STRCO/317-535; Bacterial dnaA protein
147-431 -10.100 15  PF03969.16; ZAPE_ECOLI/4-371; AFG1-like ATPase
356-424 -34.700 68  PF08299.11; D9QS97_ACEAZ/358-426; Bacterial dnaA protein helix-turn-helix
SCOP207 109-324 -92.500 42  d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
341-446 -43.000 30  d1l8qa1 a.4.12.2 (A:290-399) Chromosomal replication initiation factor DnaA C-terminal domain IV {Aquifex aeolicus [TaxId: 63363]}
VFDB 3-446 -121.000 42  [L] COG0593 ATPase involved in DNA replication initiation
2 gi|30260197|ref|NP_842574.1| DNA polymerase III subunit beta (BA_0002) [Bacillus anthracis str. Ames] 379 COG1018 1-378 -97.100 26  [L] COG0592 DNA polymerase sliding clamp subunit (PCNA homolog)
CSGID 1-379 -116.000 100  IDP04571 DNA polymerase III subunit beta [Bacillus anthracis str. Sterne] BAS0002 [Bacillus anthracis str. Sterne]
H.sapiens 134-374 -9.500 13  sp|Q99638|RAD9A_HUMAN Cell cycle checkpoint control protein RAD9A OS=Homo sapiens GN=RAD9A PE=1 SV=1
HGM_OVER 7-355 -4.400 10  PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]
NEW_HUMAN_DOMAINS 90-353 -4.400 sp|Q2LD37|K1109_HUMAN Uncharacterized protein KIAA1109 OS=Homo sapiens GN=KIAA1109 PE=1 SV=2 (Range: 324-612)
PDB1018 1-379 -113.000 74  4tr6_A mol:protein length:380 DNA polymerase III subunit beta
PfamA32U 1-126 -44.000 29  PF00712.19; DPO3B_CAUVC/1-121; DNA polymerase III beta subunit, N-terminal domain
136-252 -52.800 30  PF02767.16; DPO3B_PSEPK/129-244; DNA polymerase III beta subunit, central domain
254-377 -54.800 73  PF02768.15; DPO3B_BACSU/253-376; DNA polymerase III beta subunit, C-terminal domain
SCOP207 1-129 -51.300 24  d5w7za1 d.131.1.0 (A:1-122) automated matches {Rickettsia conorii [TaxId: 272944]}
130-253 -53.500 27  d4k3la2 d.131.1.1 (A:123-244) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
254-377 -48.800 24  d4k3la3 d.131.1.1 (A:245-365) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
VFDB 1-378 -97.100 26  [L] COG0592 DNA polymerase sliding clamp subunit (PCNA homolog)
3 gi|30260198|ref|NP_842575.1| hypothetical protein (BA_0003) [Bacillus anthracis str. Ames] 70 COG1018 1-68 -37.100 67  [S] COG2501 Uncharacterized conserved protein
CSGID 4-61 -23.300 12  IDP91404 ribosome-associated heat shock protein implicated in the recycling of the 50S subunit [Vibrio vulnificus CMCP6] VV1_0879 [Vibrio vulnificus CMCP6]
H.sapiens 12-61 -17.300 sp|P46781|RS9_HUMAN 40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3
HGM_OVER 22-55 -3.380 PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]
NEW_HUMAN_DOMAINS 7-65 -5.920 sp|Q8IUI8|CRLF3_HUMAN Cytokine receptor-like factor 3 OS=Homo sapiens GN=CRLF3 PE=1 SV=2 (Range: 281-442)
PDB1018 7-69 -36.600 23  1p9k_A mol:protein length:79 orf, hypothetical protein
PfamA32U 4-67 -34.700 40  PF13275.6; D4IXS8_BUTFI/4-68; S4 domain
SCOP207 7-68 -36.500 24  d1p9ka1 d.66.1.6 (A:3-79) Hypothetical protein YbcJ {Escherichia coli [TaxId: 562]}
VFDB 1-68 -37.100 67  [S] COG2501 Uncharacterized conserved protein
4 gi|30260199|ref|NP_842576.1| recombination protein F (BA_0004) [Bacillus anthracis str. Ames] 375 COG1018 1-370 -104.000 24  [L] COG1195 Recombinational DNA repair ATPase (RecF pathway)
CSGID 1-370 -105.000 24  IDP00109 gene: recF; Rec protein NT01SF4517 [Shigella flexneri 2a str. 2457T]
H.sapiens 1-254 -17.400 14  sp|Q92878|RAD50_HUMAN DNA repair protein RAD50 OS=Homo sapiens GN=RAD50 PE=1 SV=1 (Range: 1-300)
3-199 -18.400 17  sp|Q8IY18|SMC5_HUMAN Structural maintenance of chromosomes protein 5 OS=Homo sapiens GN=SMC5 PE=1 SV=2 (Range: 1-300)
135-351 -11.800 16  sp|Q9UQE7|SMC3_HUMAN Structural maintenance of chromosomes protein 3 OS=Homo sapiens GN=SMC3 PE=1 SV=2 (Range: 901-1200)
HGM_OVER 24-176 -2.730 16  HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;
NEW_HUMAN_DOMAINS 285-347 -4.920 14  sp|Q86UP3|ZFHX4_HUMAN Zinc finger homeobox protein 4 OS=Homo sapiens GN=ZFHX4 PE=1 SV=1 (Range: 271-370)
PDB1018 1-370 -106.000 36  5z68_A mol:protein length:373 DNA replication and repair protein RecF
PfamA32U 1-350 -24.400 13  PF13175.6; I1YS32_PREI7/1-378; AAA ATPase domain
SCOP207 1-348 -31.100 17  g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Pyrococcus furiosus [TaxId: 2261]}
VFDB 1-370 -104.000 24  [L] COG1195 Recombinational DNA repair ATPase (RecF pathway)
5 gi|30260200|ref|NP_842577.1| DNA gyrase subunit B (BA_0005) [Bacillus anthracis str. Ames] 640 COG1018 4-640 -149.000 57  [L] COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
CSGID 1-640 -210.000 100  IDP04572 DNA gyrase subunit B [Bacillus anthracis str. Sterne] BAS0005 [Bacillus anthracis str. Sterne]
H.sapiens 2-246 -71.500 21  sp|P11388|TOP2A_HUMAN DNA topoisomerase 2-alpha OS=Homo sapiens GN=TOP2A PE=1 SV=3 (Range: 1-300)
88-399 -77.800 19  sp|Q02880|TOP2B_HUMAN DNA topoisomerase 2-beta OS=Homo sapiens GN=TOP2B PE=1 SV=3 (Range: 151-450)
266-562 -97.700 23  sp|P11388|TOP2A_HUMAN DNA topoisomerase 2-alpha OS=Homo sapiens GN=TOP2A PE=1 SV=3 (Range: 301-600)
400-640 -84.300 24  sp|Q02880|TOP2B_HUMAN DNA topoisomerase 2-beta OS=Homo sapiens GN=TOP2B PE=1 SV=3 (Range: 451-750)
HGM_OVER 2-539 -3.720 PB002770 Q744K2_MYCPA/1-559 PB002770; Pfam-B_2770;
NEW_HUMAN_DOMAINS 426-500 -5.840 15  sp|Q6IEE8|SN12L_HUMAN Schlafen family member 12-like OS=Homo sapiens GN=SLFN12L PE=2 SV=3 (Range: 1-81)
PDB1018 1-640 -179.000 52  4juo_C mol:protein length:670 DNA topoisomerase 4 subunit B
PfamA32U 40-144 -14.900 17  PF13589.6; A5G4D8_GEOUR/22-165; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
227-397 -56.000 48  PF00204.25; A9KS52_LACP7/226-396; DNA gyrase B
535-633 -35.000 18  PF16898.5; K5XBZ3_PHACS/641-767; C-terminal associated domain of TOPRIM
SCOP207 21-227 -84.800 71  d4k4oa1 d.122.1.0 (A:18-224) automated matches {Enterococcus faecalis [TaxId: 226185]}
227-398 -55.300 42  d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus [TaxId: 274]}
400-633 -49.000 26  d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
419-619 -93.100 58  d3m4ia_ e.78.1.1 (A:) DNA gyrase beta-prime domain {Mycobacterium tuberculosis [TaxId: 1773]}
VFDB 4-640 -149.000 57  [L] COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
6 gi|30260201|ref|NP_842578.1| DNA gyrase subunit A (BA_0006) [Bacillus anthracis str. Ames] 823 COG1018 4-814 -158.000 45  [L] COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
CSGID 1-823 -173.000 100  IDP04573 DNA gyrase subunit A [Bacillus anthracis str. Sterne] BAS0006 [Bacillus anthracis str. Sterne]
H.sapiens 2-224 -46.600 22  sp|P11388|TOP2A_HUMAN DNA topoisomerase 2-alpha OS=Homo sapiens GN=TOP2A PE=1 SV=3 (Range: 601-900)
51-361 -56.700 21  sp|Q02880|TOP2B_HUMAN DNA topoisomerase 2-beta OS=Homo sapiens GN=TOP2B PE=1 SV=3 (Range: 751-1050)
229-508 -25.200 13  sp|Q02880|TOP2B_HUMAN DNA topoisomerase 2-beta OS=Homo sapiens GN=TOP2B PE=1 SV=3 (Range: 901-1200)
HGM_OVER 13-179 -2.110 16  HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;
NEW_HUMAN_DOMAINS 39-171 -5.140 21  sp|Q9H1B7|I2BPL_HUMAN Interferon regulatory factor 2-binding protein-like OS=Homo sapiens GN=IRF2BPL PE=1 SV=1 (Range: 373-516)
PDB1018 1-490 -120.000 71  2xcs_B mol:protein length:692 DNA GYRASE SUBUNIT B, DNA GYRASE SUBUNIT A
32-754 -126.000 34  1zvu_A mol:protein length:716 Topoisomerase IV subunit A
499-808 -39.600 31  1suu_A mol:protein length:312 DNA gyrase subunit A
PfamA32U 34-462 -63.100 21  PF00521.20; A0A0D1DXS4_USTMA/785-1232; DNA gyrase/topoisomerase IV, subunit A
SCOP207 1-520 -65.600 16  d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
32-489 -109.000 57  d3ilwa_ e.11.1.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}
503-809 -38.600 38  d4g3na_ b.68.10.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 83332]}
VFDB 4-814 -158.000 45  [L] COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
7 gi|30260202|ref|NP_842579.1| inosine 5'-monophosphate dehydrogenase (BA_0008) [Bacillus anthracis str. Ames] 487 COG1018 8-482 -117.000 41  [F] KOG2550 IMP dehydrogenase/GMP reductase
CSGID 1-487 -130.000 100  IDP01178 gene: guaB; inosine 5`-monophosphate dehydrogenase BA_0008 [Bacillus anthracis str. Ames]
H.sapiens 8-482 -116.000 42  sp|P20839|IMDH1_HUMAN Inosine-5`-monophosphate dehydrogenase 1 OS=Homo sapiens GN=IMPDH1 PE=1 SV=2
HGM_OVER 251-374 -3.910 16  HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;
NEW_HUMAN_DOMAINS 286-390 -4.570 16  sp|Q8N7Z5|ANR31_HUMAN Ankyrin repeat domain-containing protein 31 OS=Homo sapiens GN=ANKRD31 PE=5 SV=2 (Range: 1698-1780)
PDB1018 1-487 -129.000 100  3tsb_A mol:protein length:511 Inosine-5`-monophosphate dehydrogenase
PfamA32U 10-474 -115.000 55  PF00478.25; G0AB65_COLFT/7-472; IMP dehydrogenase / GMP reductase domain
SCOP207 11-463 -83.100 37  d2c6qa1 c.1.5.0 (A:10-336) automated matches {Human (Homo sapiens) [TaxId: 9606]}
VFDB 8-482 -117.000 41  [F] KOG2550 IMP dehydrogenase/GMP reductase
8 gi|30260203|ref|NP_842580.1|(removed signalp:1-28) D-alanyl-D-alanine carboxypeptidase (BA_0009) [Bacillus anthracis str. Ames] 407 COG1018 2-397 -98.100 32  [M] COG1686 D-alanyl-D-alanine carboxypeptidase
CSGID 1-407 -117.000 100  IDP01881 gene: dacA; D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. `Ames Ancestor`] GBAA0009 [Bacillus anthracis str. `Ames Ancestor`]
H.sapiens 1-269 -9.040 15  sp|A8MY62|BLML_HUMAN Putative beta-lactamase-like 1 OS=Homo sapiens GN=LACTBL1 PE=2 SV=2
HGM_OVER 10-176 -4.250 10  PB048276 _Gut.Meta.Jp.0112258_ gi|163310311|dbj|BABD01000385.1||2 (- 258:885~0 complete)
NEW_HUMAN_DOMAINS 92-157 -7.750 17  sp|Q6P988|NOTUM_HUMAN Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2 (Range: 421-496)
PDB1018 2-377 -107.000 37  1xp4_A mol:protein length:379 D-alanyl-D-alanine carboxypeptidase
PfamA32U 1-256 -88.800 34  PF00768.20; DACC_ECOLI/28-266; D-alanyl-D-alanine carboxypeptidase
275-377 -27.000 21  PF07943.13; DACA_HAEIN/282-373; Penicillin-binding protein 5, C-terminal domain
SCOP207 6-275 -98.700 44  d1xp4a2 e.3.1.1 (A:25-293) D,D-carboxypeptidase DacA, N-terminal domain {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}
275-378 -27.300 20  d3beca1 b.105.1.1 (A:263-355) Penicillin-binding protein 5, C-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 2-397 -98.100 32  [M] COG1686 D-alanyl-D-alanine carboxypeptidase
9 gi|30260204|ref|NP_842581.1| pyridoxal biosynthesis lyase PdxS (BA_0010) [Bacillus anthracis str. Ames] 295 COG1018 1-295 -109.000 80  [H] COG0214 Pyridoxine biosynthesis enzyme
CSGID 11-257 -16.300 18  IDP04524 N-acetylmannosamine-6-phosphate 2-epimerase [Salmonella typhimurium LT2] STM1129_1_226 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
44-279 -27.500 14  IDP05519 gene: thiG; thiazole synthase [Clostridium difficile 630] CD1704 [Peptoclostridium difficile 630]
H.sapiens 22-267 -8.160 12  sp|Q96AT9|RPE_HUMAN Ribulose-phosphate 3-epimerase OS=Homo sapiens GN=RPE PE=1 SV=1
HGM_OVER 11-104 -3.300 14  PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152
NEW_HUMAN_DOMAINS 3-53 -6.570 11  sp|Q711Q0|CJ071_HUMAN Uncharacterized protein C10orf71 OS=Homo sapiens GN=C10orf71 PE=2 SV=2 (Range: 1-104)
PDB1018 2-295 -119.000 67  2zbt_A mol:protein length:297 Pyridoxal biosynthesis lyase pdxS
PfamA32U 8-213 -80.900 62  PF01680.17; E3GR74_EUBLK/3-208; SOR/SNZ family
45-270 -29.400 14  PF05690.14; THIG_XANCP/11-258; Thiazole biosynthesis protein ThiG
SCOP207 2-276 -113.000 69  d2zbta_ c.1.2.6 (A:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
VFDB 1-295 -109.000 80  [H] COG0214 Pyridoxine biosynthesis enzyme
10 gi|30260205|ref|NP_842582.1| glutamine amidotransferase subunit PdxT (BA_0011) [Bacillus anthracis str. Ames] 196 COG1018 1-190 -72.200 36  [H] KOG3210 Imidazoleglycerol-phosphate synthase subunit H-like
CSGID 4-194 -64.500 19  IDP02667 gene: hisH; imidazole glycerol phosphate synthase subunit HisH [Listeria monocytogenes EGD-e] lmo0565 [Listeria monocytogenes EGD-e]
H.sapiens 3-193 -29.200 16  sp|P49915|GUAA_HUMAN GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens GN=GMPS PE=1 SV=1 (Range: 1-300)
HGM_OVER 12-84 -4.230 12  PB044863 Q5LB69_BACFN/1-105 PB044863; Pfam-B_44863;
NEW_HUMAN_DOMAINS 5-51 -5.710 23  sp|Q7L1Q6|BZW1_HUMAN Basic leucine zipper and W2 domain-containing protein 1 OS=Homo sapiens GN=BZW1 PE=1 SV=1 (Range: 27-104)
PDB1018 1-196 -90.700 66  2nv2_B mol:protein length:204 Glutamine amidotransferase subunit pdxT
PfamA32U 6-187 -64.400 36  PF01174.19; SNO3_YEAST/7-217; SNO glutamine amidotransferase family
SCOP207 1-195 -87.700 67  d2nv0a_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}
VFDB 1-190 -72.200 36  [H] KOG3210 Imidazoleglycerol-phosphate synthase subunit H-like
11 gi|30260206|ref|NP_842583.1| seryl-tRNA synthetase (BA_0012) [Bacillus anthracis str. Ames] 424 COG1018 1-424 -134.000 75  [J] COG0172 Seryl-tRNA synthetase
CSGID 1-424 -135.000 100  IDP04574 seryl-tRNA synthetase [Bacillus anthracis str. Sterne] BAS0015 [Bacillus anthracis str. Sterne]
H.sapiens 1-423 -117.000 32  sp|P49591|SYSC_HUMAN Seryl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=SARS PE=1 SV=3
HGM_OVER 219-413 -3.320 10  PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;
NEW_HUMAN_DOMAINS 250-416 -5.790 18  tr|E5RG91|E5RG91_HUMAN Uncharacterized protein OS=Homo sapiens GN=VPS37A PE=4 SV=1 (Range: 130-317)
PDB1018 1-424 -130.000 57  2dq3_A mol:protein length:425 Seryl-tRNA synthetase
PfamA32U 1-108 -30.800 22  PF02403.22; C5WTV8_SORBI/1-114; Seryl-tRNA synthetase N-terminal domain
218-400 -13.400 16  PF00587.25; SYT_ECOLI/318-529; tRNA synthetase class II core domain (G, H, P, S and T)
SCOP207 1-113 -34.200 32  d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
116-424 -115.000 40  d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
VFDB 1-424 -134.000 75  [J] COG0172 Seryl-tRNA synthetase
12 gi|30260207|ref|NP_842584.1| hypothetical protein (BA_0013) [Bacillus anthracis str. Ames] 183 COG1018 116-183 -7.470 20  [K] COG2345 Predicted transcriptional regulator
CSGID 125-169 -7.300 15  IDP01519 hypothetical protein VC2149 VC2149 [Vibrio cholerae O1 biovar El Tor str. N16961]
H.sapiens 108-169 -7.540 16  sp|Q8N3X6|LCORL_HUMAN Ligand-dependent nuclear receptor corepressor-like protein OS=Homo sapiens GN=LCORL PE=2 SV=4 (Range: 451-602)
HGM_OVER 45-175 -4.350 12  PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;
NEW_HUMAN_DOMAINS 71-135 -5.800 15  sp|Q86UA6|RIP_HUMAN RPA-interacting protein OS=Homo sapiens GN=RPAIN PE=1 SV=1 (Range: 61-219)
PDB1018 19-150 -8.810 17  4lg2_A mol:protein length:146 Polymerase cofactor
PfamA32U 70-107 -7.650 33  PF12677.7; X4ZHD3_9BACL/1-48; Domain of unknown function (DUF3797 topsan)
SCOP207 136-176 -7.300 17  d2htja1 a.4.5.73 (A:1-73) P fimbrial regulatory protein PapI {Escherichia coli [TaxId: 562]}
VFDB 116-183 -7.470 20  [K] COG2345 Predicted transcriptional regulator
13 gi|30260208|ref|NP_842585.1| deoxynucleoside kinase family protein (BA_0014) [Bacillus anthracis str. Ames] 222 COG1018 7-216 -75.300 38  [F] COG1428 Deoxynucleoside kinases
CSGID 1-222 -92.100 100  IDP05086 deoxynucleoside kinase family protein [Bacillus anthracis str. Ames] BA_0014 [Bacillus anthracis str. Ames]
H.sapiens 1-217 -73.700 24  sp|Q16854|DGUOK_HUMAN Deoxyguanosine kinase, mitochondrial OS=Homo sapiens GN=DGUOK PE=1 SV=2
HGM_OVER 14-212 -3.050 PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]
NEW_HUMAN_DOMAINS 1-36 -9.320 sp|Q6P2S7|GNN_HUMAN Tetratricopeptide repeat protein GNN OS=Homo sapiens GN=GNN PE=2 SV=3 (Range: 217-335)
PDB1018 11-217 -74.200 25  2ocp_A mol:protein length:241 Deoxyguanosine kinase
PfamA32U 15-215 -87.600 69  PF01712.19; DCK_BACSU/12-212; Deoxynucleoside kinase
SCOP207 14-210 -71.400 30  d2jaqa_ c.37.1.0 (A:) automated matches {Mycoplasma mycoides [TaxId: 44101]}
VFDB 7-216 -75.300 38  [F] COG1428 Deoxynucleoside kinases
14 gi|30260209|ref|NP_842586.1| deoxynucleoside kinase family protein (BA_0015) [Bacillus anthracis str. Ames] 211 COG1018 2-208 -72.100 23  [F] COG1428 Deoxynucleoside kinases
CSGID 1-211 -77.500 27  IDP05086 deoxynucleoside kinase family protein [Bacillus anthracis str. Ames] BA_0014 [Bacillus anthracis str. Ames]
H.sapiens 1-210 -71.000 19  sp|O00142|KITM_HUMAN Thymidine kinase 2, mitochondrial OS=Homo sapiens GN=TK2 PE=1 SV=4
HGM_OVER 6-211 -3.600 PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]
NEW_HUMAN_DOMAINS 1-28 -8.130 sp|Q6P2S7|GNN_HUMAN Tetratricopeptide repeat protein GNN OS=Homo sapiens GN=GNN PE=2 SV=3 (Range: 217-335)
PDB1018 5-204 -71.600 24  2jas_A mol:protein length:206 DEOXYGUANOSINE KINASE
PfamA32U 7-207 -76.100 29  PF01712.19; DCK_BACSU/12-212; Deoxynucleoside kinase
SCOP207 5-202 -70.800 23  d2jaqa_ c.37.1.0 (A:) automated matches {Mycoplasma mycoides [TaxId: 44101]}
VFDB 2-208 -72.100 23  [F] COG1428 Deoxynucleoside kinases
15 gi|30260210|ref|NP_842587.1| isochorismatase family protein (BA_0016) [Bacillus anthracis str. Ames] 179 COG1018 2-176 -74.700 24  [Q] COG1535 Isochorismate hydrolase
CSGID 2-176 -69.400 24  IDP00926 gene: entB; 2,3-dihydro-2,3-dihydroxybenzoate synthetase STM0597 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
H.sapiens 2-179 -37.600 18  sp|Q96CN7|ISOC1_HUMAN Isochorismatase domain-containing protein 1 OS=Homo sapiens GN=ISOC1 PE=1 SV=3
HGM_OVER 1-177 -5.120 PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;
NEW_HUMAN_DOMAINS 1-124 -6.280 12  tr|E7EWK8|E7EWK8_HUMAN Uncharacterized protein OS=Homo sapiens GN=PLOD1 PE=4 SV=2 (Range: 19-216)
PDB1018 2-176 -79.100 22  3hu5_A mol:protein length:204 Isochorismatase family protein
PfamA32U 5-175 -74.700 19  PF00857.20; Q0KD49_CUPNH/23-199; Isochorismatase family
SCOP207 2-176 -80.500 22  d3hu5a_ c.33.1.0 (A:) automated matches {Desulfovibrio vulgaris [TaxId: 882]}
VFDB 2-176 -74.700 24  [Q] COG1535 Isochorismate hydrolase
16 gi|30260211|ref|NP_842588.1|(removed signalp:1-24) hypothetical protein (BA_0017) [Bacillus anthracis str. Ames] 22 COG1018 1-22 -3.060 14  [C] KOG4326 Mitochondrial F1F0-ATP synthase, subunit e
CSGID 1-22 -2.880 27  IDP01469 peptidyl-prolyl cis-trans isomerase, FKBP-type VC2568 [Vibrio cholerae O1 biovar El Tor str. N16961]
H.sapiens 6-22 -6.120 23  sp|Q9HAW4|CLSPN_HUMAN Claspin OS=Homo sapiens GN=CLSPN PE=1 SV=3 (Range: 901-1200)
HGM_OVER 5-20 -1.860 18  PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;
NEW_HUMAN_DOMAINS 5-22 -3.310 33  sp|Q9C0C7|AMRA1_HUMAN Activating molecule in BECN1-regulated autophagy protein 1 OS=Homo sapiens GN=AMBRA1 PE=1 SV=2 (Range: 1006-1056)
PDB1018 1-21 -4.660 28  2dcw_A mol:protein length:42 Tachystatin-B2
PfamA32U 1-21 -4.660 28  PF11478.8; TACB2_TACTR/1-42; Antimicrobial chitin binding protein tachystatin B
SCOP207 1-22 -3.260 22  d2f4ea_ d.26.1.0 (A:) automated matches {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
VFDB 1-22 -3.060 14  [C] KOG4326 Mitochondrial F1F0-ATP synthase, subunit e
17 gi|30260212|ref|NP_842589.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing protein (BA_0018) [Bacillus anthracis str. Ames] 166 COG1018 1-166 -92.100 48  [FJ] COG0590 Cytosine/adenosine deaminases
CSGID 2-154 -93.600 43  IDP05096 putative cytosine/adenosine deaminase [Clostridium difficile 630] CD0015 [Peptoclostridium difficile 630]
H.sapiens 1-166 -87.500 27  sp|Q7Z6V5|ADAT2_HUMAN tRNA-specific adenosine deaminase 2 OS=Homo sapiens GN=ADAT2 PE=1 SV=1
HGM_OVER 26-138 -3.950 PB038401 Q8RFH0_FUSNN/1-210 PB038401; Pfam-B_38401;
NEW_HUMAN_DOMAINS 18-90 -7.330 16  sp|Q6ZT12|UBR3_HUMAN E3 ubiquitin-protein ligase UBR3 OS=Homo sapiens GN=UBR3 PE=2 SV=2 (Range: 1234-1320)
PDB1018 2-165 -96.600 43  1z3a_A mol:protein length:168 tRNA-specific adenosine deaminase
PfamA32U 4-151 -93.200 53  PF14437.6; D4IXV5_BUTFI/25-172; MafB19-like deaminase
SCOP207 2-163 -95.600 45  d2nx8a_ c.97.1.0 (A:) automated matches {Streptococcus pyogenes [TaxId: 301450]}
VFDB 1-166 -92.100 48  [FJ] COG0590 Cytosine/adenosine deaminases
18 gi|30260213|ref|NP_842590.1| DNA polymerase III subunits gamma and tau (BA_0019) [Bacillus anthracis str. Ames] 562 COG1018 1-562 -133.000 51  [L] COG2812 DNA polymerase III, gamma/tau subunits
CSGID 1-559 -116.000 30  IDP90891 gene: dnaX; DNA polymerase III subunits gamma and tau [Yersinia pestis CO92] YPO3122 [Yersinia pestis CO92]
H.sapiens 1-339 -70.800 22  sp|P40937|RFC5_HUMAN Replication factor C subunit 5 OS=Homo sapiens GN=RFC5 PE=1 SV=1
1-369 -59.900 17  sp|P40938|RFC3_HUMAN Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2
HGM_OVER 99-213 -3.920 13  HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;
NEW_HUMAN_DOMAINS 119-208 -5.040 17  sp|Q86UW7|CAPS2_HUMAN Calcium-dependent secretion activator 2 OS=Homo sapiens GN=CADPS2 PE=1 SV=2 (Range: 124-211)
PDB1018 1-372 -109.000 41  3glf_B mol:protein length:395 DNA polymerase III subunit tau
PfamA32U 2-242 -32.900 14  PF05673.13; Q0K6N5_CUPNH/29-287; Protein of unknown function (DUF815 topsan)
21-178 -65.900 32  PF13177.6; A5VIC8_LACRD/13-171; DNA polymerase III, delta subunit
232-372 -24.800 18  PF12169.8; Q11B01_CHESB/247-389; DNA polymerase III subunits gamma and tau domain III
419-559 -9.770 16  PF12170.8; F0LND5_VIBFN/559-697; DNA polymerase III tau subunit V interacting with alpha
SCOP207 5-243 -102.000 53  d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
243-368 -21.900 16  d1jr3a1 a.80.1.1 (A:243-368) gamma subunit {Escherichia coli [TaxId: 562]}
VFDB 1-562 -133.000 51  [L] COG2812 DNA polymerase III, gamma/tau subunits
19 gi|30260214|ref|NP_842591.1| hypothetical protein (BA_0020) [Bacillus anthracis str. Ames] 109 COG1018 5-108 -44.600 37  [S] COG0718 Uncharacterized protein conserved in bacteria
CSGID 1-109 -52.700 100  IDP02296 hypothetical protein GBAA0020 [Bacillus anthracis str. `Ames Ancestor`] GBAA0020 [Bacillus anthracis str. `Ames Ancestor`]
H.sapiens 14-103 -7.830 13  sp|Q6PJI9|WDR59_HUMAN WD repeat-containing protein 59 OS=Homo sapiens GN=WDR59 PE=1 SV=2 (Range: 301-600)
HGM_OVER 9-103 -4.700 14  HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;
NEW_HUMAN_DOMAINS 14-109 -6.020 sp|Q9H0A9|CU056_HUMAN Uncharacterized protein C21orf56 OS=Homo sapiens GN=C21orf56 PE=2 SV=3 (Range: 191-340)
PDB1018 5-108 -40.500 38  1pug_A mol:protein length:109 Hypothetical UPF0133 protein ybaB
PfamA32U 13-103 -40.700 37  PF02575.16; V5SI04_9RHIZ/8-98; YbaB/EbfC DNA-binding family
SCOP207 9-99 -40.300 59  d1ybxa_ d.222.1.0 (A:) automated matches {Clostridium thermocellum [TaxId: 1515]}
VFDB 5-108 -44.600 37  [S] COG0718 Uncharacterized protein conserved in bacteria
20 gi|30260215|ref|NP_842592.1| recombination protein RecR (BA_0021) [Bacillus anthracis str. Ames] 198 COG1018 1-198 -91.600 41  [L] COG0353 Recombinational DNA repair protein (RecF pathway)
CSGID 79-198 -8.330 18  IDP04275 DNA topoisomerase I [Bacillus anthracis str. Sterne] BAS3684 [Bacillus anthracis str. Sterne]
H.sapiens 27-191 -10.100 17  sp|Q86X67|NUD13_HUMAN Nucleoside diphosphate-linked moiety X motif 13 OS=Homo sapiens GN=NUDT13 PE=2 SV=3
HGM_OVER 22-138 -4.270 12  PB001030 Q6D4H5_ERWCT/1-146 PB001030; Pfam-B_1030;
NEW_HUMAN_DOMAINS 23-83 -6.610 18  sp|Q9H2P0|ADNP_HUMAN Activity-dependent neuroprotector homeobox protein OS=Homo sapiens GN=ADNP PE=1 SV=1 (Range: 446-529)
PDB1018 2-198 -92.000 64  3vdp_A mol:protein length:212 Recombination protein recR
PfamA32U 39-78 -16.700 32  PF02132.15; R6YA57_9FIRM/41-80; RecR protein
80-171 -45.500 53  PF13662.6; RECR_RHOFT/80-171; Toprim domain
SCOP207 3-198 -92.800 64  d3vdpa_ e.49.1.1 (A:) Recombination protein RecR {Thermoanaerobacter tengcongensis [TaxId: 273068]}
VFDB 1-198 -91.600 41  [L] COG0353 Recombinational DNA repair protein (RecF pathway)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.