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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 5436next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|30260196|ref|NP_842573.1| chromosomal replication initiation protein (BA_0001) [Bacillus anthracis str. Ames] 446 PfamA32U 5-68 -17.600 20  PF11638.8; DNAA_LAWIP/5-67; DnaA N-terminal domain
111-329 -101.000 72  PF00308.18; DNAA_STRCO/317-535; Bacterial dnaA protein
147-431 -10.100 15  PF03969.16; ZAPE_ECOLI/4-371; AFG1-like ATPase
356-424 -34.700 68  PF08299.11; D9QS97_ACEAZ/358-426; Bacterial dnaA protein helix-turn-helix
2 gi|30260197|ref|NP_842574.1| DNA polymerase III subunit beta (BA_0002) [Bacillus anthracis str. Ames] 379 PfamA32U 1-126 -44.000 29  PF00712.19; DPO3B_CAUVC/1-121; DNA polymerase III beta subunit, N-terminal domain
136-252 -52.800 30  PF02767.16; DPO3B_PSEPK/129-244; DNA polymerase III beta subunit, central domain
254-377 -54.800 73  PF02768.15; DPO3B_BACSU/253-376; DNA polymerase III beta subunit, C-terminal domain
3 gi|30260198|ref|NP_842575.1| hypothetical protein (BA_0003) [Bacillus anthracis str. Ames] 70 PfamA32U 4-67 -34.700 40  PF13275.6; D4IXS8_BUTFI/4-68; S4 domain
4 gi|30260199|ref|NP_842576.1| recombination protein F (BA_0004) [Bacillus anthracis str. Ames] 375 PfamA32U 1-350 -24.400 13  PF13175.6; I1YS32_PREI7/1-378; AAA ATPase domain
5 gi|30260200|ref|NP_842577.1| DNA gyrase subunit B (BA_0005) [Bacillus anthracis str. Ames] 640 PfamA32U 40-144 -14.900 17  PF13589.6; A5G4D8_GEOUR/22-165; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
227-397 -56.000 48  PF00204.25; A9KS52_LACP7/226-396; DNA gyrase B
535-633 -35.000 18  PF16898.5; K5XBZ3_PHACS/641-767; C-terminal associated domain of TOPRIM
6 gi|30260201|ref|NP_842578.1| DNA gyrase subunit A (BA_0006) [Bacillus anthracis str. Ames] 823 PfamA32U 34-462 -63.100 21  PF00521.20; A0A0D1DXS4_USTMA/785-1232; DNA gyrase/topoisomerase IV, subunit A
7 gi|30260202|ref|NP_842579.1| inosine 5'-monophosphate dehydrogenase (BA_0008) [Bacillus anthracis str. Ames] 487 PfamA32U 10-474 -115.000 55  PF00478.25; G0AB65_COLFT/7-472; IMP dehydrogenase / GMP reductase domain
8 gi|30260203|ref|NP_842580.1|(removed signalp:1-28) D-alanyl-D-alanine carboxypeptidase (BA_0009) [Bacillus anthracis str. Ames] 407 PfamA32U 1-256 -88.800 34  PF00768.20; DACC_ECOLI/28-266; D-alanyl-D-alanine carboxypeptidase
275-377 -27.000 21  PF07943.13; DACA_HAEIN/282-373; Penicillin-binding protein 5, C-terminal domain
9 gi|30260204|ref|NP_842581.1| pyridoxal biosynthesis lyase PdxS (BA_0010) [Bacillus anthracis str. Ames] 295 PfamA32U 8-213 -80.900 62  PF01680.17; E3GR74_EUBLK/3-208; SOR/SNZ family
45-270 -29.400 14  PF05690.14; THIG_XANCP/11-258; Thiazole biosynthesis protein ThiG
10 gi|30260205|ref|NP_842582.1| glutamine amidotransferase subunit PdxT (BA_0011) [Bacillus anthracis str. Ames] 196 PfamA32U 6-187 -64.400 36  PF01174.19; SNO3_YEAST/7-217; SNO glutamine amidotransferase family
11 gi|30260206|ref|NP_842583.1| seryl-tRNA synthetase (BA_0012) [Bacillus anthracis str. Ames] 424 PfamA32U 1-108 -30.800 22  PF02403.22; C5WTV8_SORBI/1-114; Seryl-tRNA synthetase N-terminal domain
218-400 -13.400 16  PF00587.25; SYT_ECOLI/318-529; tRNA synthetase class II core domain (G, H, P, S and T)
12 gi|30260207|ref|NP_842584.1| hypothetical protein (BA_0013) [Bacillus anthracis str. Ames] 183 PfamA32U 70-107 -7.650 33  PF12677.7; X4ZHD3_9BACL/1-48; Domain of unknown function (DUF3797 topsan)
13 gi|30260208|ref|NP_842585.1| deoxynucleoside kinase family protein (BA_0014) [Bacillus anthracis str. Ames] 222 PfamA32U 15-215 -87.600 69  PF01712.19; DCK_BACSU/12-212; Deoxynucleoside kinase
14 gi|30260209|ref|NP_842586.1| deoxynucleoside kinase family protein (BA_0015) [Bacillus anthracis str. Ames] 211 PfamA32U 7-207 -76.100 29  PF01712.19; DCK_BACSU/12-212; Deoxynucleoside kinase
15 gi|30260210|ref|NP_842587.1| isochorismatase family protein (BA_0016) [Bacillus anthracis str. Ames] 179 PfamA32U 5-175 -74.700 19  PF00857.20; Q0KD49_CUPNH/23-199; Isochorismatase family
16 gi|30260211|ref|NP_842588.1|(removed signalp:1-24) hypothetical protein (BA_0017) [Bacillus anthracis str. Ames] 22 PfamA32U 1-21 -4.660 28  PF11478.8; TACB2_TACTR/1-42; Antimicrobial chitin binding protein tachystatin B
17 gi|30260212|ref|NP_842589.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing protein (BA_0018) [Bacillus anthracis str. Ames] 166 PfamA32U 4-151 -93.200 53  PF14437.6; D4IXV5_BUTFI/25-172; MafB19-like deaminase
18 gi|30260213|ref|NP_842590.1| DNA polymerase III subunits gamma and tau (BA_0019) [Bacillus anthracis str. Ames] 562 PfamA32U 2-242 -32.900 14  PF05673.13; Q0K6N5_CUPNH/29-287; Protein of unknown function (DUF815 topsan)
21-178 -65.900 32  PF13177.6; A5VIC8_LACRD/13-171; DNA polymerase III, delta subunit
232-372 -24.800 18  PF12169.8; Q11B01_CHESB/247-389; DNA polymerase III subunits gamma and tau domain III
419-559 -9.770 16  PF12170.8; F0LND5_VIBFN/559-697; DNA polymerase III tau subunit V interacting with alpha
19 gi|30260214|ref|NP_842591.1| hypothetical protein (BA_0020) [Bacillus anthracis str. Ames] 109 PfamA32U 13-103 -40.700 37  PF02575.16; V5SI04_9RHIZ/8-98; YbaB/EbfC DNA-binding family
20 gi|30260215|ref|NP_842592.1| recombination protein RecR (BA_0021) [Bacillus anthracis str. Ames] 198 PfamA32U 39-78 -16.700 32  PF02132.15; R6YA57_9FIRM/41-80; RecR protein
80-171 -45.500 53  PF13662.6; RECR_RHOFT/80-171; Toprim domain


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.