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Results: 1-20 of 1693next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|11497090|ref|NP_051162.1| hypothetical protein (BB_P01) [Borrelia burgdorferi B31] 407 COG1018 17-398 -21.000 15  [S] COG3567 Uncharacterized protein conserved in bacteria
CSGID 194-390 -5.850 15  IDP06003 SF-assemblin, putative [Toxoplasma gondii ME49] EEB00658 [Toxoplasma gondii ME49]
H.sapiens 215-323 -5.600 28  sp|O94986|CE152_HUMAN Centrosomal protein of 152 kDa OS=Homo sapiens GN=CEP152 PE=1 SV=3 (Range: 1-300)
HGM_OVER 194-323 -3.060 16  PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;
NEW_HUMAN_DOMAINS 161-263 -5.070 22  sp|Q8WXH0|SYNE2_HUMAN Nesprin-2 OS=Homo sapiens GN=SYNE2 PE=1 SV=3 (Range: 4241-4332)
PDB1018 42-390 -5.400 4lvq_A mol:protein length:376 Phosphate-binding protein PstS 3
PfamA32U 16-381 -24.200 15  PF06381.11; Q11J16_CHESB/39-389; Protein of unknown function (DUF1073 topsan)
SCOP207 209-312 -4.690 16  d2ooca1 a.24.10.6 (A:8-111) Histidine phosphotransferase ShpA {Caulobacter crescentus [TaxId: 155892]}
VFDB 17-398 -21.000 15  [S] COG3567 Uncharacterized protein conserved in bacteria
2 gi|11497091|ref|NP_051163.1| hypothetical protein (BB_P02) [Borrelia burgdorferi B31] 230 COG1018 1-131 -7.760 14  [K] KOG4479 Transcription factor e(y)2
CSGID 3-147 -5.650 IDP04088 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_2931 [Clostridium perfringens ATCC 13124]
H.sapiens 10-140 -6.240 17  sp|Q9BWH6|RPAP1_HUMAN RNA polymerase II-associated protein 1 OS=Homo sapiens GN=RPAP1 PE=1 SV=3 (Range: 301-600)
HGM_OVER 75-106 -2.850 15  HGC00762 gi|162641591|dbj|BAAX01018014.1|1.0 TMP00997;
NEW_HUMAN_DOMAINS 88-173 -5.060 15  tr|Q86X87|Q86X87_HUMAN HCG39249, isoform CRA_d OS=Homo sapiens GN=UBOX5 PE=2 SV=1 (Range: 1-83)
PDB1018 1-157 -6.090 16  1r4v_A mol:protein length:171 Hypothetical protein AQ_328
PfamA32U 1-223 -111.000 96  PF07094.11; Q9RZX9_BORBU/1-223; Protein of unknown function (DUF1357 topsan)
SCOP207 46-230 -6.010 14  d1b63a2 d.122.1.2 (A:1-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]}
VFDB 1-131 -7.760 14  [K] KOG4479 Transcription factor e(y)2
3 gi|11497092|ref|NP_051164.1| hypothetical protein (BB_P03) [Borrelia burgdorferi B31] 185 COG1018 12-158 -8.160 14  [O] KOG0419 Ubiquitin-protein ligase
CSGID 12-159 -7.760 13  IDP92061 ubiquitin-conjugating enzyme E2, putative [Toxoplasma gondii ME49] TGME49_063490 [Toxoplasma gondii ME49]
H.sapiens 12-158 -8.310 14  sp|P51668|UB2D1_HUMAN Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1
HGM_OVER 104-180 -4.090 10  PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;
NEW_HUMAN_DOMAINS 75-144 -5.410 18  sp|Q8N7G0|PO5F2_HUMAN POU domain, class 5, transcription factor 2 OS=Homo sapiens GN=POU5F2 PE=2 SV=1 (Range: 26-113)
PDB1018 1-159 -9.740 12  2bep_A mol:protein length:159 UBIQUITIN-CONJUGATING ENZYME E2-25 KDA
PfamA32U 1-184 -97.500 51  PF02989.14; Q9S0D2_BORBU/1-190; Lyme disease proteins of unknown function
SCOP207 12-157 -8.500 12  d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 S [TaxId: 9606]}
VFDB 12-158 -8.160 14  [O] KOG0419 Ubiquitin-protein ligase
4 gi|11497093|ref|NP_051165.1| hypothetical protein (BB_P04) [Borrelia burgdorferi B31] 254 COG1018 144-250 -6.660 [S] COG3692 Uncharacterized protein conserved in bacteria
CSGID 13-254 -7.660 IDP04201 sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_0499 [Clostridium perfringens ATCC 13124]
H.sapiens 141-250 -6.250 14  sp|A8MQ11|PM2L5_HUMAN Postmeiotic segregation increased 2-like protein 5 OS=Homo sapiens GN=PMS2L5 PE=2 SV=2
HGM_OVER 1-174 -3.830 PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]
NEW_HUMAN_DOMAINS 139-176 -5.360 18  sp|P56715|RP1_HUMAN Oxygen-regulated protein 1 OS=Homo sapiens GN=RP1 PE=1 SV=1 (Range: 1905-1964)
PDB1018 145-186 -8.390 21  5irx_E mol:protein length:75 Tau-theraphotoxin-Hs1a
PfamA32U 46-247 -83.300 38  PF02989.14; Q9S0D2_BORBU/1-190; Lyme disease proteins of unknown function
SCOP207 134-253 -8.360 13  d4le5a2 d.130.1.0 (A:118-243) automated matches {Campylobacter jejuni [TaxId: 195099]}
VFDB 144-250 -6.660 [S] COG3692 Uncharacterized protein conserved in bacteria
5 gi|11497094|ref|NP_051166.1| hypothetical protein (BB_P05) [Borrelia burgdorferi B31] 190 COG1018 80-142 -5.760 14  [S] COG4765 Uncharacterized protein conserved in bacteria
CSGID 60-166 -7.350 17  IDP90187 gene: CPXV043 CDS; CPXV043 protein AAM13490.1 [Cowpox virus (Brighton Red)]
H.sapiens 61-190 -7.700 16  sp|Q9UBL3|ASH2L_HUMAN Set1/Ash2 histone methyltransferase complex subunit ASH2 OS=Homo sapiens GN=ASH2L PE=1 SV=1 (Range: 451-628)
HGM_OVER 106-188 -4.730 13  PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;
NEW_HUMAN_DOMAINS 101-188 -6.600 17  sp|Q96AQ9|F131C_HUMAN Protein FAM131C OS=Homo sapiens GN=FAM131C PE=2 SV=2 (Range: 1-119)
PDB1018 103-144 -9.380 16  5irx_E mol:protein length:75 Tau-theraphotoxin-Hs1a
PfamA32U 1-189 -107.000 88  PF02989.14; Q9S0D2_BORBU/1-190; Lyme disease proteins of unknown function
SCOP207 60-166 -7.120 12  d1luza_ b.40.4.5 (A:) Viral structural mimic of eIF2alpha {Vaccinia virus [TaxId: 10245]}
VFDB 80-142 -5.760 14  [S] COG4765 Uncharacterized protein conserved in bacteria
6 gi|11497064|ref|NP_051167.1| hypothetical protein (BB_P06) [Borrelia burgdorferi B31] 324 COG1018 65-320 -7.020 10  [S] COG4834 Uncharacterized protein conserved in bacteria
CSGID 144-242 -6.690 18  IDP92754 hypothetical protein [Vibrio cholerae O1 biovar El Tor] AGG09415 [Vibrio cholerae O1 biovar El Tor]
H.sapiens 62-267 -5.730 17  sp|Q9UKN7|MYO15_HUMAN Myosin-XV OS=Homo sapiens GN=MYO15A PE=1 SV=2 (Range: 2551-2850)
HGM_OVER 143-263 -3.510 16  HGC00803 gi|163280588|dbj|BABD01030100.1|2.0 TMP01051;
NEW_HUMAN_DOMAINS 67-237 -5.770 16  sp|Q6ZMJ4|IL34_HUMAN Interleukin-34 OS=Homo sapiens GN=IL34 PE=1 SV=1 (Range: 21-190)
PDB1018 73-314 -11.200 11  5wk1_A mol:protein length:352 Major Capsid Protein
PfamA32U 73-320 -8.990 13  PF09950.9; H8L668_FRAAD/90-334; Uncharacterized protein conserved in bacteria (DUF2184 topsan)
SCOP207 88-295 -5.280 d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
VFDB 65-320 -7.020 10  [S] COG4834 Uncharacterized protein conserved in bacteria
7 gi|11497065|ref|NP_051168.1| hypothetical protein (BB_P07) [Borrelia burgdorferi B31] 153 COG1018 31-118 -5.010 [S] COG3361 Uncharacterized conserved protein
CSGID 14-113 -5.770 11  IDP05226 putative membrane associated lipoprotein [Listeria monocytogenes EGD-e] lmo0460 [Listeria monocytogenes EGD-e]
H.sapiens 20-104 -7.070 16  sp|Q9P144|CY014_HUMAN Putative uncharacterized protein NCRNA00185 OS=Homo sapiens GN=NCRNA00185 PE=5 SV=1
HGM_OVER 4-115 -5.840 PB009534 gi|153852721|ref|ZP_01994158.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]gi|149754363|gb|EDM64294.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]
NEW_HUMAN_DOMAINS 14-54 -6.130 17  sp|A6NNG1|F86C1_HUMAN Putative protein FAM86C-like 1 OS=Homo sapiens PE=3 SV=2 (Range: 54-122)
PDB1018 9-110 -6.640 14  5xtc_g mol:protein length:119 NADH dehydrogenase [ubiquinone] 1 subunit C2
PfamA32U 7-78 -36.600 27  PF13029.6; O50935_BORBU/1-84; Domain of unknown function (DUF3890 topsan)
SCOP207 3-146 -5.850 15  d1d02a_ c.52.1.8 (A:) Restriction endonuclease MunI {Mycoplasma, unidentified species [TaxId: 2093]}
VFDB 31-118 -5.010 [S] COG3361 Uncharacterized conserved protein
8 gi|11497066|ref|NP_051169.1| hypothetical protein (BB_P08) [Borrelia burgdorferi B31] 133 COG1018 29-130 -38.300 [R] COG5614 Bacteriophage head-tail adaptor
CSGID 96-133 -6.850 15  IDP91671 VK03_VACCC [Vaccinia virus Copenhagen]
H.sapiens 7-115 -6.840 sp|Q14653|IRF3_HUMAN Interferon regulatory factor 3 OS=Homo sapiens GN=IRF3 PE=1 SV=1
HGM_OVER 7-131 -3.060 HGC00683 gi|163310582|dbj|BABD01000118.1|4.0 TMP00861;
NEW_HUMAN_DOMAINS 1-15 -8.540 46  tr|E9PH94|E9PH94_HUMAN Uncharacterized protein OS=Homo sapiens GN=C5orf42 PE=4 SV=1 (Range: 1238-1290)
PDB1018 32-133 -43.100 11  2kca_A mol:protein length:109 Bacteriophage SPP1 complete nucleotide sequence
PfamA32U 7-133 -84.700 92  PF07405.11; Q9R2M2_BORBU/1-127; Protein of unknown function (DUF1506 topsan)
SCOP207 7-118 -8.520 d2pi0b_ a.4.5.23 (B:) Interferon regulatory factor 3, IRF-3 {Human (Homo sapiens) [TaxId: 9606]}
VFDB 29-130 -38.300 [R] COG5614 Bacteriophage head-tail adaptor
9 gi|11497067|ref|NP_051170.1| hypothetical protein (BB_P09) [Borrelia burgdorferi B31] 129 COG1018 52-129 -15.300 [R] COG5005 Mu-like prophage protein gpG
CSGID 3-127 -58.900 18  IDP95026 Set165a_027 [Vibrio cholerae O1 biovar El Tor]
H.sapiens 10-124 -6.380 14  sp|Q68D42|TM215_HUMAN(removed signalp:1-31) Transmembrane protein 215 OS=Homo sapiens GN=TMEM215 PE=2 SV=1
HGM_OVER 7-129 -4.620 HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;
NEW_HUMAN_DOMAINS 29-128 -6.350 13  sp|Q8WY54|PPM1E_HUMAN Protein phosphatase 1E OS=Homo sapiens GN=PPM1E PE=1 SV=2 (Range: 132-223)
PDB1018 1-82 -6.720 2qgv_A mol:protein length:140 Hydrogenase-1 operon protein hyaE
PfamA32U 60-129 -12.000 10  PF05069.13; A1VSG9_POLNA/4-154; Phage virion morphogenesis family
SCOP207 1-41 -7.000 12  d2qgva_ c.47.1.20 (A:) automated matches {Shigella flexneri [TaxId: 198214]}
VFDB 52-129 -15.300 [R] COG5005 Mu-like prophage protein gpG
10 gi|11497068|ref|NP_051171.1| hypothetical protein (BB_P10) [Borrelia burgdorferi B31] 188 COG1018 29-180 -6.070 13  [O] KOG0855 Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes
CSGID 1-185 -5.930 15  IDP91444 hypothetical protein VV1_0416 [Vibrio vulnificus CMCP6] VV1_0416 [Vibrio vulnificus CMCP6]
H.sapiens 31-188 -6.290 15  sp|O15550|KDM6A_HUMAN Lysine-specific demethylase 6A OS=Homo sapiens GN=KDM6A PE=1 SV=2 (Range: 301-600)
HGM_OVER 16-121 -4.140 12  PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;
NEW_HUMAN_DOMAINS 13-58 -6.120 sp|Q8ND23|LR16B_HUMAN Leucine-rich repeat-containing protein 16B OS=Homo sapiens GN=LRRC16B PE=2 SV=2 (Range: 1-120)
PDB1018 1-69 -6.820 14  4df0_A mol:protein length:202 Orotidine 5`-phosphate decarboxylase
PfamA32U 1-179 -110.000 92  PF05561.11; Q9S0C9_BORBU/1-180; Borrelia burgdorferi protein of unknown function (DUF764 topsan)
SCOP207 107-151 -6.480 15  d2jn9a1 b.45.3.1 (A:3-97) Uncharacterized protein YkvR {Bacillus subtilis [TaxId: 1423]}
VFDB 29-180 -6.070 13  [O] KOG0855 Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes
11 gi|11497095|ref|NP_051172.1| hypothetical protein (BB_P11) [Borrelia burgdorferi B31] 370 COG1018 203-370 -5.950 12  [O] COG3175 Cytochrome oxidase assembly factor
CSGID 1-290 -5.040 14  IDP00678 gene: era; GTP-binding protein Era SACOL1624 [Staphylococcus aureus subsp. aureus COL]
H.sapiens 34-301 -6.630 15  sp|P62258|1433E_HUMAN 14-3-3 protein epsilon OS=Homo sapiens GN=YWHAE PE=1 SV=1
HGM_OVER 33-238 -3.580 11  HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;
NEW_HUMAN_DOMAINS 142-369 -5.150 18  sp|Q9UK61|CC063_HUMAN Uncharacterized protein C3orf63 OS=Homo sapiens GN=C3orf63 PE=1 SV=3 (Range: 1205-1474)
PDB1018 37-292 -6.410 14  5ok9_A mol:protein length:246 14-3-3 protein sigma,Heat shock protein beta-6
PfamA32U 1-362 -138.000 95  PF05619.11; Q9S003_BORBU/1-362; Borrelia burgdorferi protein of unknown function (DUF787 topsan)
SCOP207 37-280 -5.490 14  d3mhra1 a.118.7.1 (A:1-231) automated matches {Human (Homo sapiens) [TaxId: 9606]}
VFDB 203-370 -5.950 12  [O] COG3175 Cytochrome oxidase assembly factor
12 gi|11497096|ref|NP_051173.1| hypothetical protein (BB_P12) [Borrelia burgdorferi B31] 142 COG1018 10-131 -6.070 13  [S] COG3358 Uncharacterized conserved protein
CSGID 5-100 -5.580 IDP05485 putative lipoprotein [Bacillus anthracis str. Ames] BA_3234 [Bacillus anthracis str. Ames]
H.sapiens 51-118 -6.930 16  sp|Q14999|CUL7_HUMAN Cullin-7 OS=Homo sapiens GN=CUL7 PE=1 SV=2 (Range: 601-900)
HGM_OVER 1-124 -4.180 12  PB032818 Q5LA03_BACFN/1-211 PB032818; Pfam-B_32818;
NEW_HUMAN_DOMAINS 49-132 -9.450 14  sp|Q9UIF9|BAZ2A_HUMAN Bromodomain adjacent to zinc finger domain protein 2A OS=Homo sapiens GN=BAZ2A PE=1 SV=4 (Range: 911-1016)
PDB1018 14-140 -8.160 14  2lf8_A mol:protein length:128 Transcription factor ETV6
PfamA32U 3-139 -112.000 98  PF07316.11; Q9S050_BORBU/3-139; Protein of unknown function (DUF1463 topsan)
SCOP207 14-96 -7.530 15  d2md5a1 a.4.5.0 (A:329-426) automated matches {Mouse (Mus musculus) [TaxId: 10090]}
VFDB 10-131 -6.070 13  [S] COG3358 Uncharacterized conserved protein
13 gi|11497097|ref|NP_051174.1| hypothetical protein (BB_P13) [Borrelia burgdorferi B31] 151 COG1018 1-151 -7.010 10  [U] KOG1688 Golgi proteins involved in ER retention (RER)
CSGID 10-104 -5.640 18  IDP04061 gene: YPCD1.07; hypothetical protein YPCD1.07 [Yersinia pestis CO92] YPCD1.07 [Yersinia pestis CO92]
H.sapiens 4-150 -7.200 12  sp|P57058|HUNK_HUMAN Hormonally up-regulated neu tumor-associated kinase OS=Homo sapiens GN=HUNK PE=1 SV=1 (Range: 1-300)
HGM_OVER 1-149 -3.790 15  PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;
NEW_HUMAN_DOMAINS 26-114 -6.240 15  sp|Q92508|PIEZ1_HUMAN Piezo-type mechanosensitive ion channel component 1 OS=Homo sapiens GN=PIEZO1 PE=1 SV=4 (Range: 1060-1159)
PDB1018 4-150 -7.400 17  2wtk_C mol:protein length:305 SERINE/THREONINE-PROTEIN KINASE 11
PfamA32U 3-147 -102.000 44  PF07341.11; Q6ASH9_BORBP/1-163; Protein of unknown function (DUF1473 topsan)
SCOP207 4-150 -7.500 17  d2wtkc1 d.144.1.0 (C:47-310) automated matches {Human (Homo sapiens) [TaxId: 9606]}
VFDB 1-151 -7.010 10  [U] KOG1688 Golgi proteins involved in ER retention (RER)
14 gi|11497098|ref|NP_051175.1| hypothetical protein (BB_P14) [Borrelia burgdorferi B31] 78 COG1018 3-75 -6.850 13  [E] COG0685 5,10-methylenetetrahydrofolate reductase
CSGID 3-75 -6.810 11  IDP90647 gene: metF; 5,10-methylenetetrahydrofolate reductase [Vibrio cholerae O1 biovar eltor str. N16961] VC2685 [Vibrio cholerae O1 biovar El Tor str. N16961]
H.sapiens 3-75 -8.040 16  sp|P42898|MTHR_HUMAN Methylenetetrahydrofolate reductase OS=Homo sapiens GN=MTHFR PE=1 SV=3 (Range: 1-300)
HGM_OVER 8-64 -2.610 19  HGC00803 gi|163280588|dbj|BABD01030100.1|2.0 TMP01051;
NEW_HUMAN_DOMAINS 4-43 -5.960 15  sp|Q5JVF3|PCID2_HUMAN PCI domain-containing protein 2 OS=Homo sapiens GN=PCID2 PE=1 SV=2 (Range: 52-120)
PDB1018 3-75 -6.970 19  3apt_A mol:protein length:310 Methylenetetrahydrofolate reductase
PfamA32U 16-76 -46.800 47  PF07032.11; W6THF9_9SPIR/2-69; Protein of unknown function (DUF1322 topsan)
SCOP207 3-75 -7.100 19  d1v93a_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Thermus thermophilus [TaxId: 274]}
VFDB 3-75 -6.850 13  [E] COG0685 5,10-methylenetetrahydrofolate reductase
15 gi|11497099|ref|NP_051176.1| hypothetical protein (BB_P15) [Borrelia burgdorferi B31] 424 COG1018 1-423 -13.100 10  [S] COG5280 Phage-related minor tail protein
CSGID 1-405 -12.700 IDP95025 Set165a_026 [Vibrio cholerae O1 biovar El Tor]
H.sapiens 16-272 -8.350 10  sp|Q9Y6C2|EMIL1_HUMAN(removed signalp:1-23) EMILIN-1 OS=Homo sapiens GN=EMILIN1 PE=1 SV=2 (Range: 301-600)
HGM_OVER 14-84 -4.530 22  PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;
NEW_HUMAN_DOMAINS 14-359 -4.790 11  sp|Q9P1Z9|CI174_HUMAN Uncharacterized protein C9orf174 OS=Homo sapiens GN=C9orf174 PE=1 SV=2 (Range: 319-675)
PDB1018 18-264 -6.450 12  4tql_A mol:protein length:247 Three helix bundle
PfamA32U 1-422 -102.000 94  PF05537.11; Q9S0I6_BORBU/1-422; Borrelia burgdorferi protein of unknown function (DUF759 topsan)
SCOP207 8-264 -5.790 d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
VFDB 1-423 -13.100 10  [S] COG5280 Phage-related minor tail protein
16 gi|11497100|ref|NP_051177.1| hypothetical protein (BB_P16) [Borrelia burgdorferi B31] 227 COG1018 2-77 -5.200 15  [R] KOG2321 WD40 repeat protein
CSGID 95-224 -6.950 10  IDP92753 hypothetical protein [Vibrio cholerae O1 biovar El Tor] AGG09417 [Vibrio cholerae O1 biovar El Tor]
H.sapiens 28-100 -5.930 15  sp|P55056|APOC4_HUMAN(removed signalp:1-25) Apolipoprotein C-IV OS=Homo sapiens GN=APOC4 PE=1 SV=1
HGM_OVER 1-70 -3.020 12  HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178;
NEW_HUMAN_DOMAINS 66-114 -6.100 sp|Q8NHU2|CT026_HUMAN Uncharacterized protein C20orf26 OS=Homo sapiens GN=C20orf26 PE=2 SV=3 (Range: 375-462)
PDB1018 18-227 -7.540 10  2f1x_A mol:protein length:161 HAUSP/USP7
PfamA32U 45-227 -118.000 41  PF05632.11; O50944_BORBU/3-187; Borrelia burgdorferi protein of unknown function (DUF792 topsan)
SCOP207 87-216 -5.620 12  d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]}
VFDB 2-77 -5.200 15  [R] KOG2321 WD40 repeat protein
17 gi|11497101|ref|NP_051178.1| hypothetical protein (BB_P17) [Borrelia burgdorferi B31] 316 COG1018 36-96 -4.660 26  [S] COG2914 Uncharacterized protein conserved in bacteria
CSGID 34-95 -4.610 18  IDP06286 gene: infA; translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] NP_344772 [Streptococcus pneumoniae TIGR4]
H.sapiens 49-315 -5.940 sp|Q96PZ7|CSMD1_HUMAN(removed signalp:1-26) CUB and sushi domain-containing protein 1 OS=Homo sapiens GN=CSMD1 PE=1 SV=2 (Range: 1-300)
HGM_OVER 7-202 -3.280 10  PB015954 Q6WBB3_BIFBR/1-225 PB015954; Pfam-B_15954;
NEW_HUMAN_DOMAINS 31-178 -5.980 10  sp|Q12789|TF3C1_HUMAN General transcription factor 3C polypeptide 1 OS=Homo sapiens GN=GTF3C1 PE=1 SV=4 (Range: 1-174)
PDB1018 35-235 -5.960 12  4az8_A mol:protein length:240 CHAPERONE PROTEIN CAF1M
PfamA32U 1-311 -153.000 99  PF05113.13; Q9S0F4_BORBU/1-311; Protein of unknown function (DUF693 topsan)
SCOP207 5-150 -5.440 15  d3pxla1 b.6.1.0 (A:1-130) automated matches {Trametes hirsuta [TaxId: 5327]}
VFDB 36-96 -4.660 26  [S] COG2914 Uncharacterized protein conserved in bacteria
18 gi|11497102|ref|NP_051179.1| hypothetical protein (BB_P18) [Borrelia burgdorferi B31] 181 COG1018 13-171 -6.420 10  [S] COG4384 Mu-like prophage protein gp45
CSGID 34-80 -6.380 23  IDP01111 Major cold shock protein cspA BA_1135 [Bacillus anthracis str. Ames]
H.sapiens 38-94 -7.010 sp|Q709C8|VP13C_HUMAN Vacuolar protein sorting-associated protein 13C OS=Homo sapiens GN=VPS13C PE=1 SV=1 (Range: 3601-3753)
HGM_OVER 24-178 -4.030 10  HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;
NEW_HUMAN_DOMAINS 42-95 -6.280 14  sp|A6H8M9|CDHR4_HUMAN Cadherin-related family member 4 OS=Homo sapiens GN=CDHR4 PE=2 SV=1 (Range: 17-129)
PDB1018 30-171 -7.310 11  4ru3_A mol:protein length:221 puncturing protein gp41
PfamA32U 1-135 -86.400 46  PF05606.11; W6TJ35_9SPIR/1-135; Borrelia burgdorferi protein of unknown function (DUF777 topsan)
SCOP207 5-179 -6.940 11  d1qfxa_ c.60.1.2 (A:) Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase) {Aspergillus niger [TaxId: 5061]}
VFDB 13-171 -6.420 10  [S] COG4384 Mu-like prophage protein gp45
19 gi|11497069|ref|NP_051180.1| hypothetical protein (BB_P19) [Borrelia burgdorferi B31] 110 COG1018 1-110 -11.200 16  [S] COG4381 Mu-like prophage protein gp46
CSGID 18-109 -11.000 13  IDP91459 dTDP-glucose pyrophosphorylase [Vibrio vulnificus CMCP6] VV1_0096 [Vibrio vulnificus CMCP6]
H.sapiens 24-80 -6.860 21  sp|O75376|NCOR1_HUMAN Nuclear receptor corepressor 1 OS=Homo sapiens GN=NCOR1 PE=1 SV=2 (Range: 601-900)
HGM_OVER 53-103 -3.360 PB022506 Q11RP6_CYTH3/1-298 PB022506; Pfam-B_22506;
NEW_HUMAN_DOMAINS 12-57 -6.140 26  sp|O14917|PCD17_HUMAN Protocadherin-17 OS=Homo sapiens GN=PCDH17 PE=2 SV=2 (Range: 762-833)
PDB1018 5-99 -10.700 17  5iv5_T mol:protein length:132 Baseplate wedge protein gp25
PfamA32U 1-97 -13.400 10  PF10934.8; A5I4A4_CLOBH/29-134; Protein of unknown function (DUF2634 topsan)
SCOP207 21-110 -8.270 14  d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]}
VFDB 1-110 -11.200 16  [S] COG4381 Mu-like prophage protein gp46
20 gi|11497070|ref|NP_051181.1| hypothetical protein (BB_P20) [Borrelia burgdorferi B31] 291 COG1018 65-276 -16.800 12  [S] COG3299 Uncharacterized homolog of phage Mu protein gp47
CSGID 1-273 -13.200 IDP91460 Phage-related baseplate assembly protein [Vibrio vulnificus CMCP6] VV1_0095 [Vibrio vulnificus CMCP6]
H.sapiens 2-104 -5.780 sp|Q86WZ0|HEAT4_HUMAN HEAT repeat-containing protein 4 OS=Homo sapiens GN=HEATR4 PE=1 SV=1 (Range: 751-979)
HGM_OVER 124-239 -4.280 HGC00789 gi|163310627|dbj|BABD01000073.1|7.0 TMP01036;
NEW_HUMAN_DOMAINS 1-102 -4.880 sp|Q96PN6|ADCYA_HUMAN Adenylate cyclase type 10 OS=Homo sapiens GN=ADCY10 PE=1 SV=3 (Range: 1359-1471)
PDB1018 136-177 -8.250 4f98_A mol:protein length:69 hypothetical protein
PfamA32U 1-290 -105.000 100  PF03434.13; Q9R331_BORBU/1-290; DUF276 topsan
SCOP207 2-168 -6.500 14  d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}
VFDB 65-276 -16.800 12  [S] COG3299 Uncharacterized homolog of phage Mu protein gp47


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;