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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4678next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|60680547|ref|YP_210691.1| hypothetical protein (BF1003) [Bacteroides fragilis NCTC 9343] (Range: 1-117) 117 PDB1018 21-112 -30.000 17  5sxy_A mol:protein length:94 Bifunctional coenzyme PQQ synthesis protein C/D
2 gi|60680256|ref|YP_210400.1| hypothetical protein (BF0697) [Bacteroides fragilis NCTC 9343] (Range: 1-74) 74 PDB1018 55-73 -8.230 26  6fti_1 mol:protein length:162 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1,RPN1
3 gi|60681449|ref|YP_211593.1| MatE family transmembrane protein (BF1960) [Bacteroides fragilis NCTC 9343] (Range: 1-447) 447 PDB1018 1-445 -94.900 18  4z3n_A mol:protein length:499 Putative drug/sodium antiporter
4 gi|60683425|ref|YP_213569.1| 30S ribosomal protein S14 (BF3990) [Bacteroides fragilis NCTC 9343] (Range: 1-99) 99 PDB1018 1-99 -63.400 56  3j9y_n mol:protein length:102 30S ribosomal protein S14
5 gi|60682385|ref|YP_212529.1| putative CTP pyrophosphohydrolase (BF2916) [Bacteroides fragilis NCTC 9343] (Range: 1-130) 130 PDB1018 1-130 -83.600 99  3gwy_A mol:protein length:140 Putative CTP pyrophosphohydrolase
6 gi|60680762|ref|YP_210906.1| putative transmembrane conjugate transposon protein (BF1242) [Bacteroides fragilis NCTC 9343] (Range: 1-110) 110 PDB1018 9-79 -7.710 16  4xk8_H mol:protein length:90 Putative uncharacterized protein
7 gi|60683330|ref|YP_213474.1| ATP-dependent protease ATP-binding subunit ClpX (BF3893) [Bacteroides fragilis NCTC 9343] (Range: 1-415) 415 PDB1018 15-415 -40.000 13  1ksf_X mol:protein length:758 ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA
58-415 -97.100 51  1um8_A mol:protein length:376 ATP-dependent Clp protease ATP-binding subunit clpX
8 gi|60682477|ref|YP_212621.1|(removed signalp:1-23) hypothetical protein (BF3007) [Bacteroides fragilis NCTC 9343] (Range: 24-588) 565 PDB1018 1-555 -28.400 10  6af0_A mol:protein length:939 Ctr9 protein
4-330 -46.800 11  4i1a_A mol:protein length:391 Response regulator aspartate phosphatase I
21-315 -46.900 11  3q15_A mol:protein length:378 Response regulator aspartate phosphatase H
77-382 -30.700 1hz4_A mol:protein length:373 MALT REGULATORY PROTEIN
9 gi|60681243|ref|YP_211387.1| hypothetical protein (BF1751) [Bacteroides fragilis NCTC 9343] (Range: 1-157) 157 PDB1018 1-31 -8.340 2xtc_A mol:protein length:90 F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1X
10 gi|60682315|ref|YP_212459.1| hypothetical protein (BF2845) [Bacteroides fragilis NCTC 9343] (Range: 1-207) 207 PDB1018 23-204 -7.210 13  3u9l_A mol:protein length:324 3-oxoacyl-[acyl-carrier-protein] reductase
11 gi|60680924|ref|YP_211068.1| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343] (Range: 1-311) 311 PDB1018 89-311 -76.000 28  4m0h_A mol:protein length:232 Conserved hypothetical protein, putative anti-sigma factor
12 gi|60683563|ref|YP_213707.1| putative SufE Fe/S-cluster-related protein (BF4142) [Bacteroides fragilis NCTC 9343] (Range: 1-142) 142 PDB1018 1-138 -74.900 32  1mzg_A mol:protein length:146 SufE Protein
13 gi|60682225|ref|YP_212369.1| putative two component system response regulator (BF2753) [Bacteroides fragilis NCTC 9343] (Range: 1-225) 225 PDB1018 1-225 -95.800 34  1kgs_A mol:protein length:225 DNA BINDING RESPONSE REGULATOR D
14 gi|60682801|ref|YP_212945.1| nicotinate phosphoribosyltransferase (BF3334) [Bacteroides fragilis NCTC 9343] (Range: 1-388) 388 PDB1018 2-388 -116.000 47  2im5_A mol:protein length:394 Nicotinate phosphoribosyltransferase
15 gi|60680875|ref|YP_211019.1| hypothetical protein (BF1359) [Bacteroides fragilis NCTC 9343] (Range: 1-245) 245 PDB1018 2-244 -27.600 10  2fkg_A mol:protein length:320 Outer Surface Protein A
16 gi|60682029|ref|YP_212173.1| putative bifunctional CbiF/CbiG cobalamin biosynthesis protein (BF2549) [Bacteroides fragilis NCTC 9343] (Range: 1-599) 599 PDB1018 1-346 -67.100 20  3eeq_A mol:protein length:336 putative Cobalamin biosynthesis protein G homolog
350-598 -67.400 44  4e16_A mol:protein length:253 precorrin-4 C(11)-methyltransferase
17 gi|60681247|ref|YP_211391.1| hypothetical protein (BF1755) [Bacteroides fragilis NCTC 9343] (Range: 1-299) 299 PDB1018 120-296 -36.400 10  5b26_A mol:protein length:186 Protein sel-1 homolog 1
171-299 -36.900 17  1klx_A mol:protein length:138 Cysteine Rich Protein B
18 gi|60681605|ref|YP_211749.1| hypothetical protein (BF2124) [Bacteroides fragilis NCTC 9343] (Range: 1-361) 361 PDB1018 313-351 -9.350 15  2co8_A mol:protein length:82 NEDD9 interacting protein with calponin homology and LIM domains
19 gi|60681337|ref|YP_211481.1| hypothetical protein (BF1846) [Bacteroides fragilis NCTC 9343] (Range: 1-71) 71 PDB1018 4-56 -7.280 13  2w9p_A mol:protein length:87 MULTICYSTATIN
20 gi|60680681|ref|YP_210825.1| hypothetical protein (BF1156) [Bacteroides fragilis NCTC 9343] (Range: 1-221) 221 PDB1018 3-218 -73.300 24  2w7z_A mol:protein length:214 PENTAPEPTIDE REPEAT FAMILY PROTEIN


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.