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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4678next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|60680547|ref|YP_210691.1| hypothetical protein (BF1003) [Bacteroides fragilis NCTC 9343] (Range: 1-117) 117 PfamA32U 50-111 -25.200 18  PF05402.12; I3UDV1_ADVKW/25-86; Coenzyme PQQ synthesis protein D (PqqD)
2 gi|60680256|ref|YP_210400.1| hypothetical protein (BF0697) [Bacteroides fragilis NCTC 9343] (Range: 1-74) 74 PfamA32U 37-74 -7.010 18  PF16979.5; E2AFW7_CAMFO/312-435; SAPK-interacting protein 1 (Sin1), Pleckstrin-homology
3 gi|60681449|ref|YP_211593.1| MatE family transmembrane protein (BF1960) [Bacteroides fragilis NCTC 9343] (Range: 1-447) 447 PfamA32U 14-345 -18.200 PF07260.11; F1Q528_DANRE/1-344; Progressive ankylosis protein (ANKH)
44-447 -26.400 11  PF03023.14; MURJ_ECOLI/28-479; Lipid II flippase MurJ
4 gi|60683425|ref|YP_213569.1| 30S ribosomal protein S14 (BF3990) [Bacteroides fragilis NCTC 9343] (Range: 1-99) 99 PfamA32U 45-98 -38.200 57  PF00253.21; RR14_PHATC/46-99; Ribosomal protein S14p/S29e
5 gi|60682385|ref|YP_212529.1| putative CTP pyrophosphohydrolase (BF2916) [Bacteroides fragilis NCTC 9343] (Range: 1-130) 130 PfamA32U 7-126 -39.000 11  PF14815.6; R5EBJ1_9FIRM/149-257; NUDIX domain
6 gi|60680762|ref|YP_210906.1| putative transmembrane conjugate transposon protein (BF1242) [Bacteroides fragilis NCTC 9343] (Range: 1-110) 110 PfamA32U 6-96 -74.700 57  PF13571.6; I4A2I7_ORNRL/10-100; Domain of unknown function (DUF4133 topsan)
7 gi|60683330|ref|YP_213474.1| ATP-dependent protease ATP-binding subunit ClpX (BF3893) [Bacteroides fragilis NCTC 9343] (Range: 1-415) 415 PfamA32U 67-249 -20.200 23  PF05496.12; RUVB_BACAN/21-179; Holliday junction DNA helicase RuvB P-loop domain
111-309 -32.300 15  PF07724.14; Q7PAG5_RICSI/595-759; AAA domain (Cdc48 subfamily)
315-384 -18.100 16  PF10431.9; Q118T1_TRIEI/770-850; C-terminal, D2-small domain, of ClpB protein
8 gi|60682477|ref|YP_212621.1|(removed signalp:1-23) hypothetical protein (BF3007) [Bacteroides fragilis NCTC 9343] (Range: 24-588) 565 PfamA32U 11-330 -30.700 PF17874.1; W4QMK5_9BACI/433-753; MalT-like TPR region
86-323 -39.800 11  PF17139.4; R7EHD4_9BACE/12-276; Domain of unknown function (DUF5112 topsan)
157-497 -25.100 PF17826.1; G1SXV9_RABIT/101-469; Family of unknown function (DUF5588 topsan)
507-557 -9.760 13  PF00196.19; NARP_HAEIN/147-203; Bacterial regulatory proteins, luxR family
9 gi|60681243|ref|YP_211387.1| hypothetical protein (BF1751) [Bacteroides fragilis NCTC 9343] (Range: 1-157) 157 PfamA32U 10-156 -48.300 10  PF14137.6; A6LYB2_CLOB8/32-184; Domain of unknown function (DUF4304 topsan)
10 gi|60682315|ref|YP_212459.1| hypothetical protein (BF2845) [Bacteroides fragilis NCTC 9343] (Range: 1-207) 207 PfamA32U 89-177 -6.400 14  PF17039.5; B3MYJ1_DROAN/115-236; Fucosyltransferase, N-terminal
11 gi|60680924|ref|YP_211068.1| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343] (Range: 1-311) 311 PfamA32U 100-196 -30.100 21  PF04773.13; Q2YA72_NITMU/40-132; FecR protein
240-308 -21.400 20  PF16344.5; A6LGL7_PARD8/234-304; Domain of unknown function (DUF4974 topsan)
12 gi|60683563|ref|YP_213707.1| putative SufE Fe/S-cluster-related protein (BF4142) [Bacteroides fragilis NCTC 9343] (Range: 1-142) 142 PfamA32U 11-131 -66.700 40  PF02657.15; J7QRG4_METSZ/8-134; Fe-S metabolism associated domain
13 gi|60682225|ref|YP_212369.1| putative two component system response regulator (BF2753) [Bacteroides fragilis NCTC 9343] (Range: 1-225) 225 PfamA32U 2-222 -43.400 15  PF01993.18; F6D7B4_METPW/3-276; methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase
3-112 -51.900 30  PF00072.24; RSSB_ECOLI/10-121; Response regulator receiver domain
14 gi|60682801|ref|YP_212945.1| nicotinate phosphoribosyltransferase (BF3334) [Bacteroides fragilis NCTC 9343] (Range: 1-388) 388 PfamA32U 7-127 -51.200 22  PF17767.1; A0A075R4Y2_BRELA/59-193; Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain
160-385 -77.100 40  PF04095.16; PNCB_NEIMB/171-398; Nicotinate phosphoribosyltransferase (NAPRTase) family
15 gi|60680875|ref|YP_211019.1| hypothetical protein (BF1359) [Bacteroides fragilis NCTC 9343] (Range: 1-245) 245 PfamA32U 4-245 -19.900 10  PF06661.11; Q2K2F2_RHIEC/43-358; VirE3
16 gi|60682029|ref|YP_212173.1| putative bifunctional CbiF/CbiG cobalamin biosynthesis protein (BF2549) [Bacteroides fragilis NCTC 9343] (Range: 1-599) 599 PfamA32U 45-126 -47.200 50  PF11760.8; R6GY19_9FIRM/35-116; Cobalamin synthesis G N-terminal
132-213 -11.200 46  PF11761.8; R7JAV4_9BACT/120-216; Cobalamin biosynthesis central region
227-389 -43.200 25  PF01890.16; K9VGP0_9CYAN/96-268; Cobalamin synthesis G C-terminus
353-558 -52.300 26  PF00590.20; Q3A6A0_PELCD/39-272; Tetrapyrrole (Corrin/Porphyrin) Methylases
17 gi|60681247|ref|YP_211391.1| hypothetical protein (BF1755) [Bacteroides fragilis NCTC 9343] (Range: 1-299) 299 PfamA32U 215-299 -11.300 10  PF17139.4; R7EHD4_9BACE/12-276; Domain of unknown function (DUF5112 topsan)
242-277 -22.300 16  PF08238.12; Q74B15_GEOSL/119-154; Sel1 repeat
18 gi|60681605|ref|YP_211749.1| hypothetical protein (BF2124) [Bacteroides fragilis NCTC 9343] (Range: 1-361) 361 PfamA32U 246-358 -7.670 18  PF15616.6; Q5NWS3_AROAE/221-349; TerY-C metal binding domain
19 gi|60681337|ref|YP_211481.1| hypothetical protein (BF1846) [Bacteroides fragilis NCTC 9343] (Range: 1-71) 71 PfamA32U 4-55 -7.530 13  PF16845.5; B9HCU3_POPTR/31-111; Aspartic acid proteinase inhibitor
20 gi|60680681|ref|YP_210825.1| hypothetical protein (BF1156) [Bacteroides fragilis NCTC 9343] (Range: 1-221) 221 PfamA32U 38-210 -11.900 PF12541.8; R6DEH5_9CLOT/2-276; Protein of unknown function (DUF3737 topsan)
101-181 -33.500 59  PF13599.6; D6D2K3_9BACE/86-166; Pentapeptide repeats (9 copies)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Igarashi Y, Eroshkin A, Gramatikova S, Gramatikoff K, Zhang Y, Smith JW,Osterman AL, Godzik A. CutDB: a proteolytic event database. Nucleic Acids Res. 2007 Jan;35(Database issue):D546-9. Epub 2006 Nov 16.