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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4678next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|60680547|ref|YP_210691.1| hypothetical protein (BF1003) [Bacteroides fragilis NCTC 9343] (Range: 1-117) 117 VFDB 58-111 -8.940 16  [R] COG4797 Predicted regulatory domain of a methyltransferase
2 gi|60680256|ref|YP_210400.1| hypothetical protein (BF0697) [Bacteroides fragilis NCTC 9343] (Range: 1-74) 74 VFDB 34-71 -5.160 21  [S] COG4331 Predicted membrane protein
3 gi|60681449|ref|YP_211593.1| MatE family transmembrane protein (BF1960) [Bacteroides fragilis NCTC 9343] (Range: 1-447) 447 VFDB 9-440 -82.900 18  [V] COG0534 Na+-driven multidrug efflux pump
4 gi|60683425|ref|YP_213569.1| 30S ribosomal protein S14 (BF3990) [Bacteroides fragilis NCTC 9343] (Range: 1-99) 99 VFDB 1-99 -64.000 55  [J] COG0199 Ribosomal protein S14
5 gi|60682385|ref|YP_212529.1| putative CTP pyrophosphohydrolase (BF2916) [Bacteroides fragilis NCTC 9343] (Range: 1-130) 130 VFDB 7-130 -38.900 19  [F] COG1051 ADP-ribose pyrophosphatase
6 gi|60680762|ref|YP_210906.1| putative transmembrane conjugate transposon protein (BF1242) [Bacteroides fragilis NCTC 9343] (Range: 1-110) 110 VFDB 5-78 -8.930 [U] KOG4112 Signal peptidase subunit
7 gi|60683330|ref|YP_213474.1| ATP-dependent protease ATP-binding subunit ClpX (BF3893) [Bacteroides fragilis NCTC 9343] (Range: 1-415) 415 VFDB 2-415 -95.700 52  [O] COG1219 ATP-dependent protease Clp, ATPase subunit
8 gi|60682477|ref|YP_212621.1|(removed signalp:1-23) hypothetical protein (BF3007) [Bacteroides fragilis NCTC 9343] (Range: 24-588) 565 VFDB 2-564 -41.200 12  [T] KOG1130 Predicted G-alpha GTPase interaction protein, contains GoLoco domain
9 gi|60681243|ref|YP_211387.1| hypothetical protein (BF1751) [Bacteroides fragilis NCTC 9343] (Range: 1-157) 157 VFDB 3-133 -8.590 [M] COG3056 Uncharacterized lipoprotein
10 gi|60682315|ref|YP_212459.1| hypothetical protein (BF2845) [Bacteroides fragilis NCTC 9343] (Range: 1-207) 207 VFDB 153-206 -6.380 18  [S] COG0779 Uncharacterized protein conserved in bacteria
11 gi|60680924|ref|YP_211068.1| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343] (Range: 1-311) 311 VFDB 6-309 -44.700 18  [PT] COG3712 Fe2+-dicitrate sensor, membrane component
12 gi|60683563|ref|YP_213707.1| putative SufE Fe/S-cluster-related protein (BF4142) [Bacteroides fragilis NCTC 9343] (Range: 1-142) 142 VFDB 1-138 -75.100 34  [R] COG2166 SufE protein probably involved in Fe-S center assembly
13 gi|60682225|ref|YP_212369.1| putative two component system response regulator (BF2753) [Bacteroides fragilis NCTC 9343] (Range: 1-225) 225 VFDB 2-225 -85.700 25  [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
14 gi|60682801|ref|YP_212945.1| nicotinate phosphoribosyltransferase (BF3334) [Bacteroides fragilis NCTC 9343] (Range: 1-388) 388 VFDB 2-384 -89.700 20  [H] COG1488 Nicotinic acid phosphoribosyltransferase
15 gi|60680875|ref|YP_211019.1| hypothetical protein (BF1359) [Bacteroides fragilis NCTC 9343] (Range: 1-245) 245 VFDB 2-244 -12.200 10  [M] COG3209 Rhs family protein
16 gi|60682029|ref|YP_212173.1| putative bifunctional CbiF/CbiG cobalamin biosynthesis protein (BF2549) [Bacteroides fragilis NCTC 9343] (Range: 1-599) 599 VFDB 1-346 -74.800 26  [H] COG2073 Cobalamin biosynthesis protein CbiG
357-599 -69.600 45  [H] COG2875 Precorrin-4 methylase
17 gi|60681247|ref|YP_211391.1| hypothetical protein (BF1755) [Bacteroides fragilis NCTC 9343] (Range: 1-299) 299 VFDB 89-299 -28.900 10  [R] COG0790 FOG: TPR repeat, SEL1 subfamily
18 gi|60681605|ref|YP_211749.1| hypothetical protein (BF2124) [Bacteroides fragilis NCTC 9343] (Range: 1-361) 361 VFDB 50-355 -7.570 [KL] KOG2487 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4
19 gi|60681337|ref|YP_211481.1| hypothetical protein (BF1846) [Bacteroides fragilis NCTC 9343] (Range: 1-71) 71 VFDB 1-45 -5.080 13  [S] KOG4096 Uncharacterized conserved protein
20 gi|60680681|ref|YP_210825.1| hypothetical protein (BF1156) [Bacteroides fragilis NCTC 9343] (Range: 1-221) 221 VFDB 14-204 -49.700 16  [R] KOG1665 AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Jaroszewski L, Li W, Godzik A. Comparison of sequence profiles. Strategies for structural predictions using sequence information. Protein Sci. 2000 Feb;9(2):232-41.