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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 21-40 of 4778< prev pagenext page >

# Query Length Result vs. Range Score %id Covered by template(s)
21 gi|29345431|ref|NP_808934.1| hypothetical protein BT_0021 [Bacteroides thetaiotaomicron VPI-5482] 222 CSGID 4-221 -5.600 22  IDP92121 methionyl-tRNA formyltransferase [Toxoplasma gondii] ADC80547 [Toxoplasma gondii]
22 gi|29345432|ref|NP_808935.1| hypothetical protein BT_0022 [Bacteroides thetaiotaomicron VPI-5482] 96 CSGID 39-96 -19.900 12  IDP90419 gene: euo; CHLPS Euo Protein [Chlamydia trachomatis D/UW-3/CX] CT_446 [Chlamydia trachomatis D/UW-3/CX]
23 gi|29345433|ref|NP_808936.1| transposase BT_0023 [Bacteroides thetaiotaomicron VPI-5482] 121 CSGID 1-121 -7.690 18  IDP93891 chaperone protein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001005761 [Yersinia enterocolitica subsp. enterocolitica 8081]
24 gi|29345434|ref|NP_808937.1| transposase BT_0024 [Bacteroides thetaiotaomicron VPI-5482] 178 CSGID 2-178 -7.150 11  IDP04068 hypothetical protein YPCD1.94n [Yersinia pestis CO92] YPCD1.94n [Yersinia pestis CO92]
25 gi|29345435|ref|NP_808938.1| putative transposase BT_0025 [Bacteroides thetaiotaomicron VPI-5482] 45 CSGID 1-38 -5.790 10  IDP90422 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_471 [Chlamydia trachomatis D/UW-3/CX]
26 gi|29345436|ref|NP_808939.1| putative transposase BT_0026 [Bacteroides thetaiotaomicron VPI-5482] 140 CSGID 3-124 -6.090 IDP01917 gene: hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [Bacillus anthracis str. `Ames Ancestor`] GBAA1429 [Bacillus anthracis str. `Ames Ancestor`]
27 gi|29345437|ref|NP_808940.1| putative transposase BT_0027 [Bacteroides thetaiotaomicron VPI-5482] 178 CSGID 24-132 -8.090 12  IDP91920 Spn1 transposase, partial [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100000782 [Streptococcus pneumoniae str. Canada MDR_19A]
28 gi|29345438|ref|NP_808941.1|(removed signal:1-17) alkaline phosphatase BT_0028 [Bacteroides thetaiotaomicron VPI-5482] 75 CSGID 2-75 -35.000 28  IDP90595 gene: phoA; alkaline phosphatase [Yersinia pestis CO92] YPO2298 [Yersinia pestis CO92]
29 gi|29345439|ref|NP_808942.1|(removed signal:1-23) hypothetical protein BT_0029 [Bacteroides thetaiotaomicron VPI-5482] 1064 CSGID 5-904 -14.100 14  IDP01364 iron(III) compound receptor VC0200 [Vibrio cholerae O1 biovar El Tor str. N16961]
35-1064 -27.800 13  IDP06071 gene: fecA_2; iron(III) dicitrate transport protein [Helicobacter pylori J99] NP_223461 [Helicobacter pylori J99]
69-1064 -29.000 12  IDP02626 gene: chuA; TonB-dependent heme receptor [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1614 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
30 gi|29345440|ref|NP_808943.1| hypothetical protein BT_0030 [Bacteroides thetaiotaomicron VPI-5482] 609 CSGID 1-272 -10.100 11  IDP91435 DNA uptake lipoprotein [Vibrio vulnificus CMCP6] VV1_0485 [Vibrio vulnificus CMCP6]
31 gi|29345441|ref|NP_808944.1| hypothetical protein BT_0031 [Bacteroides thetaiotaomicron VPI-5482] 354 CSGID 26-262 -41.100 19  IDP00442 gene: trpH; hypothetical protein YPO2211 YPO2211 [Yersinia pestis CO92]
29-333 -11.000 11  IDP92118 adenosine/AMP deaminase domain containing protein [Toxoplasma gondii ME49] TGME49_015480 [Toxoplasma gondii ME49]
32 gi|29345442|ref|NP_808945.1|(removed signal:1-21) hypothetical protein BT_0032 [Bacteroides thetaiotaomicron VPI-5482] 44 CSGID 1-41 -3.590 14  IDP05644 gene: bclA2; exosporium glycoprotein [Clostridium difficile 630] CD3230 [Peptoclostridium difficile 630]
33 gi|29345443|ref|NP_808946.1| hypothetical protein BT_0033 [Bacteroides thetaiotaomicron VPI-5482] 96 CSGID 4-95 -6.090 16  IDP95278 extracellular nuclease [Acinetobacter baumannii ATCC 17978] YP_001084229 [Acinetobacter baumannii ATCC 17978]
34 gi|29345444|ref|NP_808947.1| hypothetical protein BT_0034 [Bacteroides thetaiotaomicron VPI-5482] 403 CSGID 156-395 -7.290 IDP04068 hypothetical protein YPCD1.94n [Yersinia pestis CO92] YPCD1.94n [Yersinia pestis CO92]
35 gi|29345445|ref|NP_808948.1| hypothetical protein BT_0035 [Bacteroides thetaiotaomicron VPI-5482] 67 CSGID 1-54 -5.680 IDP01996 putative D-mannonate oxidoreductase [Salmonella typhimurium LT2] STM3136 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
36 gi|29345446|ref|NP_808949.1| integrase BT_0036 [Bacteroides thetaiotaomicron VPI-5482] 403 CSGID 1-402 -19.300 10  IDP93806 gene: intS; putative prophage CPS-53 integrase [Yersinia enterocolitica W22703] CBX71857 [Yersinia enterocolitica W22703]
29-396 -33.500 13  IDP93810 gene: int; putative phage integrase [Yersinia enterocolitica subsp. enterocolitica 8081] CAL12417 [Yersinia enterocolitica subsp. enterocolitica 8081]
76-396 -35.500 16  IDP00783 pathogenicity island protein, integrase SACOL0885 [Staphylococcus aureus subsp. aureus COL]
120-395 -37.800 14  IDP05681 gene: codV; hypothetical protein lmo1277 [Listeria monocytogenes EGD-e] lmo1277 [Listeria monocytogenes EGD-e]
37 gi|29345447|ref|NP_808950.1| putative transcriptional regulatory protein BT_0037 [Bacteroides thetaiotaomicron VPI-5482] 351 CSGID 33-207 -41.500 13  IDP00612 gene: nusG; transcription antitermination protein NusG SACOL0582 [Staphylococcus aureus subsp. aureus COL]
38 gi|29345448|ref|NP_808951.1| hypothetical protein BT_0038 [Bacteroides thetaiotaomicron VPI-5482] 145 CSGID 42-126 -5.340 IDP02693 gene: ddlB; D-alanine--D-alanine ligase B [Francisella tularensis subsp. tularensis SCHU S4] FTT0185 [Francisella tularensis subsp. tularensis SCHU S4]
39 gi|29345449|ref|NP_808952.1| hypothetical protein BT_0039 [Bacteroides thetaiotaomicron VPI-5482] 142 CSGID 2-73 -17.400 23  IDP01780 gene: ybhA; phosphotransferase [Salmonella typhimurium LT2] STM0784 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
2-112 -12.200 12  IDP05316 putative phosphatase [Clostridium difficile 630] CD3605 [Peptoclostridium difficile 630]
40 gi|29345450|ref|NP_808953.1| hypothetical protein BT_0040 [Bacteroides thetaiotaomicron VPI-5482] 513 CSGID 1-436 -28.200 14  IDP05138 putative drug/sodium antiporter [Clostridium difficile 630] CD2874 [Peptoclostridium difficile 630]


FFAS is supported by the NIH grant R01-GM087218-01
1 2 9 7 3 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhi D, Krishna SS, Cao H, Pevzner P, Godzik A. Representing and comparing protein structures as paths in three-dimensionalspace. BMC Bioinformatics. 2006 Oct 20;7:460.