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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4778next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|29345411|ref|NP_808914.1| hypothetical protein BT_0001 [Bacteroides thetaiotaomicron VPI-5482] 205 HGM_OVER 1-106 -4.270 8  HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;
2 gi|29345412|ref|NP_808915.1|(removed signal:1-19) hypothetical protein BT_0002 [Bacteroides thetaiotaomicron VPI-5482] 312 HGM_OVER 1-169 -4.530 8  PB012823 Q5LCS8_BACFN/1-272 PB012823; Pfam-B_12823;
3 gi|29345413|ref|NP_808916.1| hypothetical protein BT_0003 [Bacteroides thetaiotaomicron VPI-5482] 258 HGM_OVER 49-213 -4.550 9  PB017610 Q11T14_CYTH3/22-188 PB017610; Pfam-B_17610;
4 gi|29345414|ref|NP_808917.1| hypothetical protein BT_0004 [Bacteroides thetaiotaomicron VPI-5482] 222 HGM_OVER 1-170 -4.010 9  PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;
5 gi|29345415|ref|NP_808918.1| 30S ribosomal protein S17 BT_0005 [Bacteroides thetaiotaomicron VPI-5482] 178 HGM_OVER 1-23 -5.030 26  PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;
6 gi|29345416|ref|NP_808919.1| hypothetical protein BT_0006 [Bacteroides thetaiotaomicron VPI-5482] 148 HGM_OVER 1-49 -10.000 18  HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455;
7 gi|29345417|ref|NP_808920.1| hypothetical protein BT_0007 [Bacteroides thetaiotaomicron VPI-5482] 130 HGM_OVER 49-117 -5.380 15  PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;
8 gi|29345418|ref|NP_808921.1| hypothetical protein BT_0008 [Bacteroides thetaiotaomicron VPI-5482] 181 HGM_OVER 14-125 -2.960 13  PB012472 gi|62259485|gb|AAX77857.1| unknown protein [synthetic construct]
9 gi|29345419|ref|NP_808922.1|(removed signal:1-26) phosphate-binding periplasmic protein precursor, putative ABC transporter BT_0009 [Bacteroides thetaiotaomicron VPI-5482] 343 HGM_OVER 2-138 -6.580 5  PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;
10 gi|29345420|ref|NP_808923.1| hypothetical protein BT_0010 [Bacteroides thetaiotaomicron VPI-5482] 357 HGM_OVER 209-356 -3.870 10  PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;
11 gi|29345421|ref|NP_808924.1| hypothetical protein BT_0011 [Bacteroides thetaiotaomicron VPI-5482] 282 HGM_OVER 131-275 -4.170 13  PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;
12 gi|29345422|ref|NP_808925.1|(removed signal:1-34) hypothetical protein BT_0012 [Bacteroides thetaiotaomicron VPI-5482] 354 HGM_OVER 14-202 -4.060 11  PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;
13 gi|29345423|ref|NP_808926.1| hypothetical protein BT_0013 [Bacteroides thetaiotaomicron VPI-5482] 180 HGM_OVER 1-180 -4.250 8  PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;
14 gi|29345424|ref|NP_808927.1| two-component system histidine kinase with response regulator receiver domain BT_0014 [Bacteroides thetaiotaomicron VPI-5482] 807 HGM_OVER 435-670 -3.250 12  PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;
15 gi|29345425|ref|NP_808928.1| rteB, two-component system response regulator BT_0015 [Bacteroides thetaiotaomicron VPI-5482] 432 HGM_OVER 4-282 -3.340 10  PB162065 _Gut.Meta.Jp.0089312_ gi|162832207|dbj|BABA01012502.1||1 (- 0:1326~0 complete)
16 gi|29345426|ref|NP_808929.1| hypothetical protein BT_0016 [Bacteroides thetaiotaomicron VPI-5482] 212 HGM_OVER 133-212 -5.230 5  HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;
17 gi|29345427|ref|NP_808930.1| hypothetical protein BT_0017 [Bacteroides thetaiotaomicron VPI-5482] 315 HGM_OVER 222-315 -4.160 6  PB036876 Q56VH6_BACFR/1-141 PB036876; Pfam-B_36876;
18 gi|29345428|ref|NP_808931.1| hypothetical protein BT_0018 [Bacteroides thetaiotaomicron VPI-5482] 238 HGM_OVER 2-191 -3.900 7  PB000790 _Gut.Meta.Jp.0111831_ gi|163310496|dbj|BABD01000203.1||3 (- 2591:4589~0 complete)
19 gi|29345429|ref|NP_808932.1| hypothetical protein BT_0019 [Bacteroides thetaiotaomicron VPI-5482] 106 HGM_OVER 8-106 -3.610 7  PB008806 Q5L9W8_BACFN/1-127 PB008806; Pfam-B_8806;
20 gi|29345430|ref|NP_808933.1| hypothetical protein BT_0020 [Bacteroides thetaiotaomicron VPI-5482] 152 HGM_OVER 35-90 -3.210 7  PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;