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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4778next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|29345411|ref|NP_808914.1| hypothetical protein BT_0001 [Bacteroides thetaiotaomicron VPI-5482] 205 PfamA32U 184-205 -6.510 22  PF06093.13; SPT4_CANAL/6-85; Spt4/RpoE2 zinc finger
2 gi|29345412|ref|NP_808915.1|(removed signal:1-19) hypothetical protein BT_0002 [Bacteroides thetaiotaomicron VPI-5482] 312 PfamA32U 103-205 -8.660 12  PF14344.6; A9AZA1_HERA2/30-148; Domain of unknown function (DUF4397 topsan)
3 gi|29345413|ref|NP_808916.1| hypothetical protein BT_0003 [Bacteroides thetaiotaomicron VPI-5482] 258 PfamA32U 4-124 -48.500 39  PF14848.6; J9QY98_RIEAN/3-123; DNA-binding domain
132-231 -36.300 39  PF14734.6; B3QWM9_CHLT3/130-225; Domain of unknown function (DUF4469 topsan) with IG-like fold
4 gi|29345414|ref|NP_808917.1| hypothetical protein BT_0004 [Bacteroides thetaiotaomicron VPI-5482] 222 PfamA32U 26-159 -6.980 13  PF08664.10; Q81S68_BACAN/159-299; YcbB domain
5 gi|29345415|ref|NP_808918.1| 30S ribosomal protein S17 BT_0005 [Bacteroides thetaiotaomicron VPI-5482] 178 PfamA32U 46-106 -14.000 13  PF16205.5; T1FFX1_HELRO/5-69; Ribosomal_S17 N-terminal
108-175 -58.800 47  PF00366.20; M9X2Z9_MANHA/10-77; Ribosomal protein S17
6 gi|29345416|ref|NP_808919.1| hypothetical protein BT_0006 [Bacteroides thetaiotaomicron VPI-5482] 148 PfamA32U 1-106 -8.200 16  PF15444.6; M3W3J1_FELCA/1-212; Transmembrane protein 247
7 gi|29345417|ref|NP_808920.1| hypothetical protein BT_0007 [Bacteroides thetaiotaomicron VPI-5482] 130 PfamA32U 3-127 -8.430 14  PF17093.5; Q9A3C7_CAUVC/1-138; Penicillin-binding protein N-terminus
8 gi|29345418|ref|NP_808921.1| hypothetical protein BT_0008 [Bacteroides thetaiotaomicron VPI-5482] 181 PfamA32U 24-181 -26.400 16  PF13673.7; R6CQE4_9CLOT/34-160; Acetyltransferase (GNAT) domain
9 gi|29345419|ref|NP_808922.1|(removed signal:1-26) phosphate-binding periplasmic protein precursor, putative ABC transporter BT_0009 [Bacteroides thetaiotaomicron VPI-5482] 343 PfamA32U 16-305 -64.500 15  PF12849.7; B6YQR6_AZOPC/32-299; PBP superfamily domain
10 gi|29345420|ref|NP_808923.1| hypothetical protein BT_0010 [Bacteroides thetaiotaomicron VPI-5482] 357 PfamA32U 246-356 -7.870 12  PF12126.8; I3MLB7_ICTTR/239-567; Protein of unknown function (DUF3583 topsan)
11 gi|29345421|ref|NP_808924.1| hypothetical protein BT_0011 [Bacteroides thetaiotaomicron VPI-5482] 282 PfamA32U 206-278 -8.810 24  PF15759.5; G5BQB5_HETGA/102-601; TMEM108 family
12 gi|29345422|ref|NP_808925.1|(removed signal:1-34) hypothetical protein BT_0012 [Bacteroides thetaiotaomicron VPI-5482] 354 PfamA32U 30-176 -6.640 10  PF03548.15; LOLA_PSEPK/34-197; Outer membrane lipoprotein carrier protein LolA
13 gi|29345423|ref|NP_808926.1| hypothetical protein BT_0013 [Bacteroides thetaiotaomicron VPI-5482] 180 PfamA32U 26-88 -6.060 21  PF08965.10; X2GUQ4_9GAMM/1-117; Domain of unknown function (DUF1870 topsan)
14 gi|29345424|ref|NP_808927.1| two-component system histidine kinase with response regulator receiver domain BT_0014 [Bacteroides thetaiotaomicron VPI-5482] 807 PfamA32U 302-745 -9.600 10  PF15449.6; F7B3J9_HORSE/1-1249; Retinal protein
327-391 -25.600 30  PF00512.25; Q55783_SYNY3/185-253; His Kinase A (phospho-acceptor) domain
407-535 -11.000 PF10090.9; Q20YL4_RHOPB/92-213; Histidine phosphotransferase C-terminal domain
438-545 -36.500 43  PF02518.26; O52937_9CYAN/626-739; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
567-807 -15.500 PF01993.18; F6D7B4_METPW/3-276; methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase
570-681 -27.800 20  PF00072.24; RSSB_ECOLI/10-121; Response regulator receiver domain
15 gi|29345425|ref|NP_808928.1| rteB, two-component system response regulator BT_0015 [Bacteroides thetaiotaomicron VPI-5482] 432 PfamA32U 4-113 -36.700 30  PF00072.24; RSSB_ECOLI/10-121; Response regulator receiver domain
62-350 -21.000 14  PF08298.11; YEAG_ECOLI/19-380; PrkA AAA domain
127-293 -76.200 46  PF00158.26; Q8E8E7_SHEON/154-320; Sigma-54 interaction domain
389-429 -12.800 43  PF02954.19; Q9KQ67_VIBCH/430-470; Bacterial regulatory protein, Fis family
16 gi|29345426|ref|NP_808929.1| hypothetical protein BT_0016 [Bacteroides thetaiotaomicron VPI-5482] 212 PfamA32U 2-211 -55.400 13  PF09357.10; F4C775_SPHS2/62-280; RteC protein
17 gi|29345427|ref|NP_808930.1| hypothetical protein BT_0017 [Bacteroides thetaiotaomicron VPI-5482] 315 PfamA32U 222-312 -7.660 PF05604.11; OSER1_MOUSE/1-180; Protein of unknown function (DUF776 topsan)
18 gi|29345428|ref|NP_808931.1| hypothetical protein BT_0018 [Bacteroides thetaiotaomicron VPI-5482] 238 PfamA32U 98-151 -7.000 14  PF18692.1; R6DJM9_9BACE/35-128; Family of unknown function (DUF5640 topsan)
19 gi|29345429|ref|NP_808932.1| hypothetical protein BT_0019 [Bacteroides thetaiotaomicron VPI-5482] 106 PfamA32U 7-81 -10.300 15  PF06857.11; CITD_STRU0/4-85; Malonate decarboxylase delta subunit (MdcD)
20 gi|29345430|ref|NP_808933.1| hypothetical protein BT_0020 [Bacteroides thetaiotaomicron VPI-5482] 152 PfamA32U 33-80 -6.120 15  PF11937.8; Q0V1U9_PHANO/70-244; Protein of unknown function (DUF3455 topsan)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.