current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 21-40 of 4778< prev pagenext page >

# Query Length Result vs. Range Score %id Covered by template(s)
21 gi|29345431|ref|NP_808934.1| hypothetical protein BT_0021 [Bacteroides thetaiotaomicron VPI-5482] 222 VFDB 11-153 -5.360 11  [W] KOG3989 Beta-2-glycoprotein I
22 gi|29345432|ref|NP_808935.1| hypothetical protein BT_0022 [Bacteroides thetaiotaomicron VPI-5482] 96 VFDB 24-90 -13.700 16  [K] COG3311 Predicted transcriptional regulator
23 gi|29345433|ref|NP_808936.1| transposase BT_0023 [Bacteroides thetaiotaomicron VPI-5482] 121 VFDB 1-119 -47.300 31  [L] COG3328 Transposase and inactivated derivatives
24 gi|29345434|ref|NP_808937.1| transposase BT_0024 [Bacteroides thetaiotaomicron VPI-5482] 178 VFDB 2-177 -67.200 37  [L] COG3328 Transposase and inactivated derivatives
25 gi|29345435|ref|NP_808938.1| putative transposase BT_0025 [Bacteroides thetaiotaomicron VPI-5482] 45 VFDB 1-45 -20.500 42  [L] COG3328 Transposase and inactivated derivatives
26 gi|29345436|ref|NP_808939.1| putative transposase BT_0026 [Bacteroides thetaiotaomicron VPI-5482] 140 VFDB 2-139 -35.200 39  [L] COG3666 Transposase and inactivated derivatives
27 gi|29345437|ref|NP_808940.1| putative transposase BT_0027 [Bacteroides thetaiotaomicron VPI-5482] 178 VFDB 1-178 -71.200 39  [L] COG3666 Transposase and inactivated derivatives
28 gi|29345438|ref|NP_808941.1|(removed signal:1-17) alkaline phosphatase BT_0028 [Bacteroides thetaiotaomicron VPI-5482] 75 VFDB 1-75 -42.000 32  [P] KOG4126 Alkaline phosphatase
29 gi|29345439|ref|NP_808942.1|(removed signal:1-23) hypothetical protein BT_0029 [Bacteroides thetaiotaomicron VPI-5482] 1064 VFDB 8-1064 -23.400 11  [P] COG1629 Outer membrane receptor proteins, mostly Fe transport
58-1064 -28.400 10  [P] COG4772 Outer membrane receptor for Fe3+-dicitrate
30 gi|29345440|ref|NP_808943.1| hypothetical protein BT_0030 [Bacteroides thetaiotaomicron VPI-5482] 609 VFDB 1-197 -8.360 11  [M] COG2980 Rare lipoprotein B
31 gi|29345441|ref|NP_808944.1| hypothetical protein BT_0031 [Bacteroides thetaiotaomicron VPI-5482] 354 VFDB 28-263 -43.300 20  [R] COG0613 Predicted metal-dependent phosphoesterases (PHP family)
29-354 -10.000 12  [F] COG1816 Adenosine deaminase
32 gi|29345442|ref|NP_808945.1|(removed signal:1-21) hypothetical protein BT_0032 [Bacteroides thetaiotaomicron VPI-5482] 44 VFDB 2-34 -3.860 21  [S] COG4331 Predicted membrane protein
33 gi|29345443|ref|NP_808946.1| hypothetical protein BT_0033 [Bacteroides thetaiotaomicron VPI-5482] 96 VFDB 1-95 -11.800 15  [R] COG4085 Predicted RNA-binding protein, contains TRAM domain
34 gi|29345444|ref|NP_808947.1| hypothetical protein BT_0034 [Bacteroides thetaiotaomicron VPI-5482] 403 VFDB 2-397 -99.400 15  [L] COG3039 Transposase and inactivated derivatives, IS5 family
35 gi|29345445|ref|NP_808948.1| hypothetical protein BT_0035 [Bacteroides thetaiotaomicron VPI-5482] 67 VFDB 29-63 -6.000 22  [J] COG2260 Predicted Zn-ribbon RNA-binding protein
36 gi|29345446|ref|NP_808949.1| integrase BT_0036 [Bacteroides thetaiotaomicron VPI-5482] 403 VFDB 8-384 -21.000 [L] COG0582 Integrase
106-395 -36.400 13  [L] COG4973 Site-specific recombinase XerC
37 gi|29345447|ref|NP_808950.1| putative transcriptional regulatory protein BT_0037 [Bacteroides thetaiotaomicron VPI-5482] 351 VFDB 38-207 -42.400 11  [K] COG0250 Transcription antiterminator
38 gi|29345448|ref|NP_808951.1| hypothetical protein BT_0038 [Bacteroides thetaiotaomicron VPI-5482] 145 VFDB 1-137 -5.380 14  [G] KOG2631 Class II aldolase/adducin N-terminal domain protein
39 gi|29345449|ref|NP_808952.1| hypothetical protein BT_0039 [Bacteroides thetaiotaomicron VPI-5482] 142 VFDB 1-141 -25.100 [R] COG3700 Acid phosphatase (class B)
40 gi|29345450|ref|NP_808953.1| hypothetical protein BT_0040 [Bacteroides thetaiotaomicron VPI-5482] 513 VFDB 1-506 -37.300 11  [R] COG2244 Membrane protein involved in the export of O-antigen and teichoic acid


FFAS is supported by the NIH grant R01-GM087218-01
1 2 9 7 3 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhi D, Krishna SS, Cao H, Pevzner P, Godzik A. Representing and comparing protein structures as paths in three-dimensionalspace. BMC Bioinformatics. 2006 Oct 20;7:460.