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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15894240|ref|NP_347589.1| hypothetical protein (CA_C0953) [Clostridium acetobutylicum ATCC 824] (Range: 1-132) 132 COG1018 42-132 -6.430 15  [R] KOG1030 Predicted Ca2+-dependent phospholipid-binding protein
CSGID 2-132 -5.120 12  IDP00762 staphylocoagulase precursor SACOL0209 [Staphylococcus aureus subsp. aureus COL]
H.sapiens 43-132 -9.660 15  sp|Q9HC10|OTOF_HUMAN Otoferlin OS=Homo sapiens GN=OTOF PE=1 SV=3 (Range: 901-1200)
HGM_OVER 72-126 -4.200 12  HGC00789 gi|163310627|dbj|BABD01000073.1|7.0 TMP01036;
NEW_HUMAN_DOMAINS 93-132 -6.120 22  tr|F8VX10|F8VX10_HUMAN Uncharacterized protein OS=Homo sapiens GN=C12orf41 PE=4 SV=1 (Range: 328-409)
PDB1018 26-132 -9.770 12  3kwt_A mol:protein length:148 Munc13-1
PfamA32U 42-132 -7.970 12  PF00168.30; BON3_ARATH/52-157; C2 domain
SCOP207 41-132 -9.670 13  d3kwua1 b.7.1.0 (A:687-819) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}
VFDB 42-132 -6.430 15  [R] KOG1030 Predicted Ca2+-dependent phospholipid-binding protein
2 gi|15895268|ref|NP_348617.1| ABC-type transport system, ATPase component (CA_C1998) [Clostridium acetobutylicum ATCC 824] (Range: 1-224) 224 COG1018 2-224 -108.000 40  [Q] COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component
CSGID 4-224 -110.000 42  IDP02070 ABC transporter, ATP-binding protein [Coxiella burnetii RSA 493] CBU_1809 [Coxiella burnetii RSA 493]
H.sapiens 2-222 -50.300 21  sp|O94911|ABCA8_HUMAN ATP-binding cassette sub-family A member 8 OS=Homo sapiens GN=ABCA8 PE=1 SV=3 (Range: 1201-1500)
HGM_OVER 7-202 -3.830 12  PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]
NEW_HUMAN_DOMAINS 7-51 -7.760 sp|Q6P2S7|GNN_HUMAN Tetratricopeptide repeat protein GNN OS=Homo sapiens GN=GNN PE=2 SV=3 (Range: 217-335)
PDB1018 1-224 -108.000 39  5lj9_A mol:protein length:231 Macrolide export ATP-binding/permease protein MacB
PfamA32U 18-224 -36.200 13  PF09818.9; Q10V01_TRIEI/4-493; Predicted ATPase of the ABC class
24-173 -43.900 28  PF00005.27; YTFR_ECOLI/25-174; ABC transporter
SCOP207 2-224 -104.000 46  d2pcja_ c.37.1.0 (A:) automated matches {Aquifex aeolicus [TaxId: 224324]}
VFDB 2-224 -108.000 40  [Q] COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component
3 gi|15895079|ref|NP_348428.1| ribosome-binding factor A (CA_C1803) [Clostridium acetobutylicum ATCC 824] (Range: 1-121) 121 COG1018 2-121 -60.500 30  [J] COG0858 Ribosome-binding factor A
CSGID 3-119 -54.300 26  IDP06174 gene: rbfA; ribosome-binding factor A [Helicobacter pylori J99] NP_223097 [Helicobacter pylori J99]
H.sapiens 1-121 -40.500 17  sp|Q8N0V3|RBFAL_HUMAN Putative ribosome-binding factor A, mitochondrial OS=Homo sapiens GN=C18orf22 PE=1 SV=3
HGM_OVER 9-121 -3.620 10  PB048276 _Gut.Meta.Jp.0112258_ gi|163310311|dbj|BABD01000385.1||2 (- 258:885~0 complete)
NEW_HUMAN_DOMAINS 25-90 -5.970 16  sp|Q92889|XPF_HUMAN DNA repair endonuclease XPF OS=Homo sapiens GN=ERCC4 PE=1 SV=3 (Range: 541-644)
PDB1018 1-118 -61.900 19  1pa4_A mol:protein length:116 Probable ribosome-binding factor A
PfamA32U 5-109 -54.800 37  PF02033.18; R5QDT1_9FIRM/5-110; Ribosome-binding factor A
SCOP207 2-104 -56.400 32  d2kzfa1 d.52.7.0 (A:2-106) automated matches {Thermotoga maritima [TaxId: 2336]}
VFDB 2-121 -60.500 30  [J] COG0858 Ribosome-binding factor A
4 gi|15896238|ref|NP_349587.1| dimethyladenosine transferase (CA_C2986) [Clostridium acetobutylicum ATCC 824] (Range: 1-276) 276 COG1018 2-276 -93.900 26  [J] COG0030 Dimethyladenosine transferase (rRNA methylation)
CSGID 1-276 -112.000 68  IDP04517 gene: ksgA; dimethyladenosine transferase [Clostridium perfringens ATCC 13124] CPF_2840 [Clostridium perfringens ATCC 13124]
H.sapiens 2-276 -93.900 28  sp|Q9UNQ2|DIMT1_HUMAN Probable dimethyladenosine transferase OS=Homo sapiens GN=DIMT1L PE=1 SV=1
HGM_OVER 21-225 -3.540 10  PB015954 Q6WBB3_BIFBR/1-225 PB015954; Pfam-B_15954;
NEW_HUMAN_DOMAINS 24-150 -6.660 13  tr|E9PL53|E9PL53_HUMAN Uncharacterized protein OS=Homo sapiens GN=SAAL1 PE=4 SV=1 (Range: 69-209)
PDB1018 2-274 -103.000 31  4jxj_A mol:protein length:276 Ribosomal RNA small subunit methyltransferase A
PfamA32U 14-270 -104.000 49  PF00398.20; RSMA_BACSU/19-283; Ribosomal RNA adenine dimethylase
SCOP207 23-276 -99.900 34  d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}
VFDB 2-276 -93.900 26  [J] COG0030 Dimethyladenosine transferase (rRNA methylation)
5 gi|15894673|ref|NP_348022.1| phosphoribosylglycinamide formyltransferase (CA_C1394) [Clostridium acetobutylicum ATCC 824] (Range: 1-204) 204 COG1018 2-204 -81.500 40  [G] KOG3076 5`-phosphoribosylglycinamide formyltransferase
CSGID 1-204 -88.500 55  IDP04229 gene: purN; phosphoribosylglycinamide formyltransferase [Clostridium perfringens ATCC 13124] CPF_0676 [Clostridium perfringens ATCC 13124]
H.sapiens 2-204 -75.000 40  sp|P22102|PUR2_HUMAN Trifunctional purine biosynthetic protein adenosine-3 OS=Homo sapiens GN=GART PE=1 SV=1 (Range: 751-1010)
HGM_OVER 3-47 -2.770 HGC00870 gi|163286116|dbj|BABD01024572.1|2.0 TMP01154;
NEW_HUMAN_DOMAINS 71-121 -5.930 19  sp|Q8TEE9|SAP25_HUMAN Histone deacetylase complex subunit SAP25 OS=Homo sapiens GN=SAP25 PE=1 SV=2 (Range: 1-52)
PDB1018 1-204 -81.700 36  3p9x_A mol:protein length:211 phosphoribosylglycinamide formyltransferase
PfamA32U 2-185 -78.800 40  PF00551.19; PUR2_DROME/1154-1336; Formyl transferase
SCOP207 4-204 -81.900 40  d4ew1a1 c.65.1.1 (A:3-203) Glycinamide ribonucleotide transformylase, GART {Human (Homo sapiens) [TaxId: 9606]}
VFDB 2-204 -81.500 40  [G] KOG3076 5`-phosphoribosylglycinamide formyltransferase
6 gi|15894664|ref|NP_348013.1| Alpha-ribazole-5'-phosphate phosphatase, CobC (CA_C1385) [Clostridium acetobutylicum ATCC 824] (Range: 1-191) 191 COG1018 2-190 -76.900 23  [G] COG0588 Phosphoglycerate mutase 1
CSGID 2-191 -90.900 31  IDP90806 gene: phpB; alpha-ribazole phosphatase [Shigella flexneri 2a str. 2457T] S0665 [Shigella flexneri 2a str. 2457T]
H.sapiens 1-191 -76.600 22  sp|Q8N0Y7|PGAM4_HUMAN Probable phosphoglycerate mutase 4 OS=Homo sapiens GN=PGAM4 PE=1 SV=1
HGM_OVER 1-142 -3.520 13  PB000716 Q60CS7_METCA/1-294 PB000716; Pfam-B_716;
NEW_HUMAN_DOMAINS 49-103 -6.620 12  sp|Q6L9W6|B4GN3_HUMAN N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 2 OS=Homo sapiens GN=B4GALNT3 PE=1 SV=2 (Range: 327-408)
PDB1018 1-191 -92.600 29  4ij5_A mol:protein length:211 Phosphoserine phosphatase 1
PfamA32U 5-191 -89.400 27  PF00300.22; Q3Z6L9_DEHM1/5-197; Histidine phosphatase superfamily (branch 1)
SCOP207 1-191 -92.600 29  d4ij5a_ c.60.1.0 (A:) automated matches {Hydrogenobacter thermophilus [TaxId: 608538]}
VFDB 2-190 -76.900 23  [G] COG0588 Phosphoglycerate mutase 1
7 gi|15894369|ref|NP_347718.1| Beta-glucosidase family protein (CA_C1084) [Clostridium acetobutylicum ATCC 824] (Range: 1-474) 474 COG1018 2-470 -136.000 39  [G] COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase
CSGID 2-471 -136.000 37  IDP04454 gene: bglA; 6-phospho-beta-glucosidase [Yersinia pestis CO92] YPO1254 [Yersinia pestis CO92]
H.sapiens 4-470 -120.000 31  sp|Q9H227|GBA3_HUMAN Cytosolic beta-glucosidase OS=Homo sapiens GN=GBA3 PE=1 SV=2
HGM_OVER 10-117 -2.980 13  PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;
NEW_HUMAN_DOMAINS 62-151 -6.340 12  sp|Q6EMB2|TTLL5_HUMAN Tubulin polyglutamylase TTLL5 OS=Homo sapiens GN=TTLL5 PE=1 SV=3 (Range: 464-542)
PDB1018 2-471 -150.000 60  4ze4_A mol:protein length:485 Putative 6-phospho-beta-galactobiosidase
PfamA32U 2-469 -148.000 61  PF00232.18; BGLC_BACSU/5-475; Glycosyl hydrolase family 1
SCOP207 2-471 -149.000 60  d5okaa_ c.1.8.0 (A:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]}
VFDB 2-470 -136.000 39  [G] COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase
8 gi|15896898|ref|NP_350247.1| alpha/beta fold family hydrolase (CA_C3665) [Clostridium acetobutylicum ATCC 824] (Range: 1-265) 265 COG1018 2-264 -65.000 25  [I] KOG4667 Predicted esterase
CSGID 4-264 -44.700 18  IDP06504 Surface protein from Gram-positive cocci, anchor region [Enterococcus faecium DO] EAN10897 [Enterococcus faecium DO]
H.sapiens 1-260 -62.500 18  sp|Q9NUJ1|ABHDA_HUMAN(removed signalp:1-21) Abhydrolase domain-containing protein 10, mitochondrial OS=Homo sapiens GN=ABHD10 PE=1 SV=1
HGM_OVER 62-261 -4.440 11  PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;
NEW_HUMAN_DOMAINS 5-77 -10.400 tr|F8WBB3|F8WBB3_HUMAN Uncharacterized protein OS=Homo sapiens GN=ABHD1 PE=4 SV=1 (Range: 22-102)
PDB1018 4-263 -76.700 32  3pf8_A mol:protein length:270 Cinnamoyl esterase
PfamA32U 7-264 -55.800 15  PF02273.15; C7BN06_PHOAA/8-301; Acyl transferase
SCOP207 5-264 -56.300 16  d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]}
VFDB 2-264 -65.000 25  [I] KOG4667 Predicted esterase
9 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 1-500) 500 COG1018 1-500 -103.000 29  [L] COG3857 ATP-dependent nuclease, subunit B
CSGID 5-498 -43.400 13  IDP05220 putative integral membrane protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1101 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
H.sapiens 5-344 -14.800 10  sp|Q8NFZ0|FBX18_HUMAN F-box only protein 18 OS=Homo sapiens GN=FBXO18 PE=1 SV=2 (Range: 451-750)
162-382 -11.600 10  sp|O15050|TRNK1_HUMAN TPR and ankyrin repeat-containing protein 1 OS=Homo sapiens GN=TRANK1 PE=2 SV=4 (Range: 1351-1650)
HGM_OVER 44-229 -3.430 PB022697 Q5LAY4_BACFN/1-165 PB022697; Pfam-B_22697;
NEW_HUMAN_DOMAINS 64-189 -9.340 10  tr|B4DZ31|B4DZ31_HUMAN Uncharacterized protein OS=Homo sapiens GN=C12orf48 PE=2 SV=1 (Range: 1-120)
PDB1018 1-500 -107.000 29  3u44_B mol:protein length:1166 ATP-dependent helicase/deoxyribonuclease subunit B
PfamA32U 5-260 -28.400 15  PF00580.21; REP_HAEIN/3-266; UvrD/REP helicase N-terminal domain
12-497 -16.100 12  PF04257.14; RECC_ECOLI/1-806; Exodeoxyribonuclease V, gamma subunit
SCOP207 5-489 -41.100 16  g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
VFDB 1-500 -103.000 29  [L] COG3857 ATP-dependent nuclease, subunit B
10 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 251-750) 500 COG1018 1-500 -96.900 30  [L] COG3857 ATP-dependent nuclease, subunit B
CSGID 42-429 -40.300 12  IDP04218 gene: recC; exonuclease V subunit gamma [Salmonella typhimurium LT2] STM2996_1_1123 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
H.sapiens 199-425 -12.700 11  sp|Q8NFZ0|FBX18_HUMAN F-box only protein 18 OS=Homo sapiens GN=FBXO18 PE=1 SV=2 (Range: 751-1043)
HGM_OVER 256-344 -3.370 15  HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636;
NEW_HUMAN_DOMAINS 26-425 -4.880 10  sp|Q63HN8|RN213_HUMAN RING finger protein 213 OS=Homo sapiens GN=RNF213 PE=1 SV=2 (Range: 923-1542)
PDB1018 1-497 -96.800 30  3u44_B mol:protein length:1166 ATP-dependent helicase/deoxyribonuclease subunit B
PfamA32U 42-457 -44.900 13  PF04257.14; RECC_ECOLI/1-806; Exodeoxyribonuclease V, gamma subunit
SCOP207 34-488 -58.000 13  d1w36c2 c.37.1.19 (C:348-817) Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 1-500 -96.900 30  [L] COG3857 ATP-dependent nuclease, subunit B
11 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 501-1000) 500 COG1018 1-500 -122.000 32  [L] COG3857 ATP-dependent nuclease, subunit B
CSGID 2-431 -12.100 10  IDP04218 gene: recC; exonuclease V subunit gamma [Salmonella typhimurium LT2] STM2996_1_1123 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
419-494 -13.500 17  IDP92662 hypothetical protein LPW_01811 [Legionella pneumophila 130b] CBW98325 [Legionella pneumophila 130b]
H.sapiens 1-175 -10.900 11  sp|Q8NFZ0|FBX18_HUMAN F-box only protein 18 OS=Homo sapiens GN=FBXO18 PE=1 SV=2 (Range: 751-1043)
271-480 -22.500 12  sp|Q9H790|DEM1_HUMAN Defects in morphology protein 1 homolog OS=Homo sapiens GN=DEM1 PE=2 SV=1
HGM_OVER 369-469 -3.240 14  HGC00878 gi|162869432|dbj|BABB01000575.1|7.0 TMP01167;
NEW_HUMAN_DOMAINS 260-352 -5.960 12  sp|Q9BQP7|CT072_HUMAN Uncharacterized protein C20orf72 OS=Homo sapiens GN=C20orf72 PE=1 SV=1 (Range: 129-220)
PDB1018 1-500 -120.000 32  3u44_B mol:protein length:1166 ATP-dependent helicase/deoxyribonuclease subunit B
PfamA32U 2-179 -9.900 13  PF04257.14; RECC_ECOLI/1-806; Exodeoxyribonuclease V, gamma subunit
20-156 -13.600 19  PF13361.6; K9YCL2_HALP7/269-792; UvrD-like helicase C-terminal domain
274-500 -79.400 36  PF12705.7; D6XUK2_BACIE/780-1125; PD-(D/E)XK nuclease superfamily
SCOP207 1-179 -13.800 14  d1w36c2 c.37.1.19 (C:348-817) Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain {Escherichia coli [TaxId: 562]}
307-497 -12.100 15  d1w36b3 c.52.1.24 (B:899-1174) Exodeoxyribonuclease V beta chain (RecB), C-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 1-500 -122.000 32  [L] COG3857 ATP-dependent nuclease, subunit B
12 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 751-1153) 403 COG1018 1-396 -101.000 35  [L] COG3857 ATP-dependent nuclease, subunit B
CSGID 169-363 -17.700 16  IDP92662 hypothetical protein LPW_01811 [Legionella pneumophila 130b] CBW98325 [Legionella pneumophila 130b]
H.sapiens 24-384 -29.800 14  sp|Q9H790|DEM1_HUMAN Defects in morphology protein 1 homolog OS=Homo sapiens GN=DEM1 PE=2 SV=1
HGM_OVER 119-219 -3.080 14  HGC00878 gi|162869432|dbj|BABB01000575.1|7.0 TMP01167;
NEW_HUMAN_DOMAINS 63-204 -4.920 12  tr|B4DQ88|B4DQ88_HUMAN Uncharacterized protein OS=Homo sapiens GN=EMR2 PE=2 SV=1 (Range: 1-160)
PDB1018 1-399 -104.000 35  3u44_B mol:protein length:1166 ATP-dependent helicase/deoxyribonuclease subunit B
PfamA32U 24-364 -108.000 34  PF12705.7; D6XUK2_BACIE/780-1125; PD-(D/E)XK nuclease superfamily
SCOP207 57-292 -11.100 15  d1w36b3 c.52.1.24 (B:899-1174) Exodeoxyribonuclease V beta chain (RecB), C-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 1-396 -101.000 35  [L] COG3857 ATP-dependent nuclease, subunit B
13 gi|15895492|ref|NP_348841.1| chemotaxis protein CheW (CA_C2224) [Clostridium acetobutylicum ATCC 824] (Range: 1-147) 147 COG1018 2-147 -58.700 19  [NT] COG0835 Chemotaxis signal transduction protein
CSGID 2-147 -72.200 32  IDP00100 gene: cheW; positive regulator of CheA protein activity NT01SF2345 [Shigella flexneri 2a str. 2457T]
H.sapiens 14-54 -7.360 17  sp|O95411|TIAF1_HUMAN TGFB1-induced anti-apoptotic factor 1 OS=Homo sapiens GN=TIAF1 PE=2 SV=2
HGM_OVER 1-47 -3.600 14  PB071107 _Gut.Meta.Jp.0066071_ gi|162701604|dbj|BAAY01026246.1||2 (+ 344:749~0 complete)
NEW_HUMAN_DOMAINS 49-98 -5.340 16  sp|A3KN83|SBNO1_HUMAN Protein strawberry notch homolog 1 OS=Homo sapiens GN=SBNO1 PE=1 SV=1 (Range: 1149-1360)
PDB1018 2-147 -72.200 32  2ho9_A mol:protein length:167 Chemotaxis protein cheW
PfamA32U 8-143 -19.500 18  PF01584.19; Q8XQ78_RALSO/559-691; CheW-like domain
SCOP207 2-147 -72.200 32  d2ho9a_ b.40.7.0 (A:) automated matches {Escherichia coli [TaxId: 562]}
VFDB 2-147 -58.700 19  [NT] COG0835 Chemotaxis signal transduction protein
14 gi|15894672|ref|NP_348021.1| phosphoribosylaminoimidazole synthetase (CA_C1393) [Clostridium acetobutylicum ATCC 824] (Range: 1-332) 332 COG1018 2-329 -98.200 51  [F] COG0150 Phosphoribosylaminoimidazole (AIR) synthetase
CSGID 1-332 -101.000 69  IDP04228 gene: purM; phosphoribosylaminoimidazole synthetase [Clostridium perfringens ATCC 13124] CPF_0675 [Clostridium perfringens ATCC 13124]
H.sapiens 7-331 -46.500 14  sp|P49903|SPS1_HUMAN Selenide, water dikinase 1 OS=Homo sapiens GN=SEPHS1 PE=1 SV=2
18-306 -78.700 47  sp|P22102|PUR2_HUMAN Trifunctional purine biosynthetic protein adenosine-3 OS=Homo sapiens GN=GART PE=1 SV=1 (Range: 451-750)
HGM_OVER 1-192 -2.270 15  PB015879 Q5LJ14_BACFN/120-411 PB015879; Pfam-B_15879;
NEW_HUMAN_DOMAINS 92-151 -4.310 11  sp|Q5U5X8|CL034_HUMAN Uncharacterized protein C12orf34 OS=Homo sapiens GN=C12orf34 PE=2 SV=1 (Range: 380-452)
PDB1018 2-331 -98.100 49  3p4e_A mol:protein length:349 Phosphoribosylformylglycinamidine cyclo-ligase
PfamA32U 39-159 -28.800 22  PF00586.24; E6WZK0_NITSE/47-154; AIR synthase related protein, N-terminal domain
173-328 -48.300 43  PF02769.22; PUR5_NEIMB/175-337; AIR synthase related protein, C-terminal domain
SCOP207 2-165 -63.800 46  d3qtya1 d.79.4.0 (A:1-170) automated matches {Francisella tularensis [TaxId: 119856]}
167-332 -45.800 39  d2v9ya2 d.139.1.0 (A:600-792) automated matches {Human (Homo sapiens) [TaxId: 9606]}
VFDB 2-329 -98.200 51  [F] COG0150 Phosphoribosylaminoimidazole (AIR) synthetase
15 gi|15893880|ref|NP_347229.1| riboflavin synthase subunit alpha (CA_C0591) [Clostridium acetobutylicum ATCC 824] (Range: 1-213) 213 COG1018 1-203 -88.600 34  [H] KOG3310 Riboflavin synthase alpha chain
CSGID 1-212 -96.100 46  IDP05517 gene: ribB; riboflavin synthase subunit alpha [Clostridium difficile 630] CD1699 [Peptoclostridium difficile 630]
H.sapiens 7-140 -6.680 11  sp|Q6P4F2|ADXL_HUMAN Adrenodoxin-like protein, mitochondrial OS=Homo sapiens GN=FDX1L PE=2 SV=1
HGM_OVER 129-213 -4.290 PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
NEW_HUMAN_DOMAINS 3-68 -5.500 18  sp|Q5R3F8|LRFN6_HUMAN Leucine-rich repeat and fibronectin type-III domain-containing protein 6 OS=Homo sapiens GN=ELFN2 PE=1 SV=1 (Range: 319-396)
PDB1018 1-197 -94.100 39  4e0f_A mol:protein length:210 Riboflavin synthase subunit alpha
PfamA32U 97-181 -41.800 48  PF00677.17; B3EB72_GEOLS/99-183; Lumazine binding domain
SCOP207 1-89 -40.100 42  d4gqna1 b.43.4.0 (A:1-96) automated matches {Brucella abortus [TaxId: 235]}
90-195 -55.700 36  d4gqnb2 b.43.4.0 (B:97-202) automated matches {Brucella abortus [TaxId: 235]}
VFDB 1-203 -88.600 34  [H] KOG3310 Riboflavin synthase alpha chain
16 gi|15893578|ref|NP_346927.1| hypothetical protein (CA_C0286) [Clostridium acetobutylicum ATCC 824] (Range: 1-244) 244 COG1018 1-243 -84.300 17  [S] COG4200 Uncharacterized protein conserved in bacteria
CSGID 1-241 -14.700 10  IDP00178 putative ABC transporter, integral membrane protein YPO3405 [Yersinia pestis CO92]
H.sapiens 1-198 -13.400 13  sp|Q9H221|ABCG8_HUMAN ATP-binding cassette sub-family G member 8 OS=Homo sapiens GN=ABCG8 PE=1 SV=1 (Range: 301-600)
1-241 -10.200 sp|Q6NV75|GP153_HUMAN(removed signalp:1-26) Probable G-protein coupled receptor 153 OS=Homo sapiens GN=GPR153 PE=2 SV=2
HGM_OVER 93-191 -5.230 PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;
NEW_HUMAN_DOMAINS 6-85 -5.930 11  sp|C9JH25|PRRT4_HUMAN Proline-rich transmembrane protein 4 OS=Homo sapiens GN=PRRT4 PE=2 SV=1 (Range: 535-696)
PDB1018 9-244 -8.080 5kk2_E mol:protein length:323 Voltage-dependent calcium channel gamma-2 subunit
PfamA32U 4-182 -41.400 14  PF12730.7; R6N7Z5_9FIRM/4-186; ABC-2 family transporter protein
4-243 -22.000 11  PF12679.7; E4NSW3_HALBP/4-306; ABC-2 family transporter protein
SCOP207 10-186 -6.500 d3jbre_ f.63.1.1 (E:) L-type calcium channel Gamma-1 subunit {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
VFDB 1-243 -84.300 17  [S] COG4200 Uncharacterized protein conserved in bacteria
17 gi|15896862|ref|NP_350211.1| oligopeptide ABC transporter, ATPase component (CA_C3628) [Clostridium acetobutylicum ATCC 824] (Range: 1-322) 322 COG1018 7-322 -126.000 52  [E] COG4608 ABC-type oligopeptide transport system, ATPase component
CSGID 7-322 -125.000 52  IDP01146 oligopeptide ABC transporter, ATP-binding protein BA_0235 [Bacillus anthracis str. Ames]
H.sapiens 1-259 -42.500 18  sp|P61221|ABCE1_HUMAN ATP-binding cassette sub-family E member 1 OS=Homo sapiens GN=ABCE1 PE=1 SV=1
29-245 -43.000 28  sp|Q9NP58|ABCB6_HUMAN ATP-binding cassette sub-family B member 6, mitochondrial OS=Homo sapiens GN=ABCB6 PE=1 SV=1 (Range: 601-842)
HGM_OVER 46-225 -3.040 11  PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]
NEW_HUMAN_DOMAINS 105-263 -4.820 12  sp|Q9H6A9|PCX3_HUMAN Pecanex-like protein 3 OS=Homo sapiens GN=PCNXL3 PE=1 SV=2 (Range: 1100-1315)
PDB1018 8-322 -109.000 32  4fwi_B mol:protein length:334 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
PfamA32U 3-241 -29.100 11  PF09818.9; Q10V01_TRIEI/4-493; Predicted ATPase of the ABC class
31-183 -33.600 24  PF00005.27; YTFR_ECOLI/25-174; ABC transporter
234-301 -31.700 38  PF08352.12; Q8TTX6_METAC/231-290; Oligopeptide/dipeptide transporter, C-terminal region
SCOP207 10-254 -73.400 33  d3tuic1 c.37.1.12 (C:1-240) automated matches {Escherichia coli K-12 [TaxId: 83333]}
42-307 -10.400 11  d3enda_ c.37.1.0 (A:) automated matches {Rhodobacter sphaeroides [TaxId: 272943]}
VFDB 7-322 -126.000 52  [E] COG4608 ABC-type oligopeptide transport system, ATPase component
18 gi|15895331|ref|NP_348680.1| segregation and condensation protein A (CA_C2061) [Clostridium acetobutylicum ATCC 824] (Range: 1-249) 249 COG1018 2-249 -85.900 29  [S] COG1354 Uncharacterized conserved protein
CSGID 44-108 -5.940 13  IDP91730 gene: CCL28; C-C motif chemokine 28 precursor [Homo sapiens] NP_683513 [Homo sapiens]
H.sapiens 177-247 -11.700 14  sp|O60216|RAD21_HUMAN Double-strand-break repair protein rad21 homolog OS=Homo sapiens GN=RAD21 PE=1 SV=2 (Range: 451-631)
HGM_OVER 21-114 -3.400 14  HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;
NEW_HUMAN_DOMAINS 7-111 -6.310 15  tr|B4DZ31|B4DZ31_HUMAN Uncharacterized protein OS=Homo sapiens GN=C12orf48 PE=2 SV=1 (Range: 1-120)
PDB1018 1-165 -71.900 41  3w6j_A mol:protein length:174 ScpA
173-249 -27.900 32  5h66_C mol:protein length:80 Segregation and condensation protein A
PfamA32U 20-244 -52.700 15  PF02616.14; P74212_SYNY3/16-259; Segregation and condensation protein ScpA
SCOP207 180-247 -10.100 22  d1w1we_ a.4.5.57 (E:) Sister chromatid cohesion protein 1 (SCC1), C-terminal domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 2-249 -85.900 29  [S] COG1354 Uncharacterized conserved protein
19 gi|15894096|ref|NP_347445.1| hydrogenase formation factor (hypE) (CA_C0809) [Clostridium acetobutylicum ATCC 824] (Range: 1-335) 335 COG1018 2-335 -95.400 51  [O] COG0309 Hydrogenase maturation factor
CSGID 14-333 -66.700 17  IDP00521 gene: thiL; thiamine monophosphate kinase YPO3180 [Yersinia pestis CO92]
H.sapiens 1-333 -57.300 18  sp|P49903|SPS1_HUMAN Selenide, water dikinase 1 OS=Homo sapiens GN=SEPHS1 PE=1 SV=2
HGM_OVER 94-283 -2.740 HGC00787 gi|162657578|dbj|BAAX01002027.1|2.0 TMP01033;
NEW_HUMAN_DOMAINS 103-247 -5.440 15  sp|Q6Y2X3|DJC14_HUMAN DnaJ homolog subfamily C member 14 OS=Homo sapiens GN=DNAJC14 PE=2 SV=2 (Range: 512-616)
PDB1018 2-335 -96.500 46  2z1t_A mol:protein length:343 Hydrogenase expression/formation protein HypE
PfamA32U 37-149 -33.700 18  PF00586.24; E6WZK0_NITSE/47-154; AIR synthase related protein, N-terminal domain
67-308 -11.500 11  PF12818.7; VG75_EHV2/265-542; dsDNA viral tegument protein
SCOP207 10-154 -37.800 10  d2yyda1 d.79.4.1 (A:3-154) Selenide, water dikinase SelD {Aquifex aeolicus [TaxId: 63363]}
38-151 -51.600 50  d2z1ea1 d.79.4.1 (A:43-155) Hydrogenase expression/formation protein HypE {Thermococcus kodakaraensis [TaxId: 311400]}
155-331 -52.100 41  d2z1ea2 d.139.1.1 (A:156-334) Hydrogenase expression/formation protein HypE {Thermococcus kodakaraensis [TaxId: 311400]}
VFDB 2-335 -95.400 51  [O] COG0309 Hydrogenase maturation factor
20 gi|15895945|ref|NP_349294.1| DNA helicase (CA_C2687) [Clostridium acetobutylicum ATCC 824] (Range: 1-714) 714 COG1018 1-593 -150.000 39  [L] COG0514 Superfamily II DNA helicase
3-714 -35.900 16  [R] COG1201 Lhr-like helicases
CSGID 1-344 -33.800 19  IDP06316 DEAD/DEAH box helicase [Streptococcus pneumoniae TIGR4] NP_345259 [Streptococcus pneumoniae TIGR4]
2-191 -68.700 30  IDP05084 putative ATP-dependent DNA helicase (together with adjacent 3 orfs) [Escherichia coli O157:H7 EDL933] Z4803 [Escherichia coli O157:H7 str. EDL933]
5-382 -11.100 18  IDP01191 Protein translocase subunit secA 2 BA_0882 [Bacillus anthracis str. Ames]
H.sapiens 1-269 -78.200 39  sp|O94762|RECQ5_HUMAN ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2 (Range: 1-300)
69-365 -88.900 37  sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=1 (Range: 601-900)
132-414 -86.200 33  sp|O94762|RECQ5_HUMAN ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2 (Range: 151-450)
217-495 -74.400 31  sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=1 (Range: 751-1050)
271-573 -62.400 18  sp|O94762|RECQ5_HUMAN ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2 (Range: 301-600)
381-643 -37.100 18  sp|P54132|BLM_HUMAN Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1 (Range: 1051-1350)
426-702 -35.200 16  sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=1 (Range: 1051-1350)
HGM_OVER 37-152 -5.000 17  PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
NEW_HUMAN_DOMAINS 50-185 -4.160 13  sp|Q8IXR9|CL056_HUMAN Uncharacterized protein C12orf56 OS=Homo sapiens GN=C12orf56 PE=2 SV=2 (Range: 483-625)
PDB1018 1-605 -133.000 33  4cdg_A mol:protein length:673 BLOOM SYNDROME PROTEIN
3-714 -31.900 13  5v9x_A mol:protein length:877 ATP-dependent DNA helicase
PfamA32U 19-185 -69.900 40  PF00270.29; SGS1_YEAST/680-854; DEAD/DEAH box helicase
20-358 -17.500 13  PF06862.12; UTP25_SCHPO/187-651; Utp25, U3 small nucleolar RNA-associated SSU processome protein 25
22-688 -13.000 10  PF02399.15; OBP_VZVD/13-828; Origin of replication binding protein
215-324 -29.100 27  PF00271.31; Q9ZCQ0_RICPR/221-329; Helicase conserved C-terminal domain
336-399 -25.600 30  PF16124.5; R7J4M7_9BACT/340-402; RecQ zinc-binding
401-509 -28.900 28  PF09382.10; Q5F644_NEIG1/401-509; RQC domain
518-585 -24.400 38  PF00570.23; Q8G567_BIFLO/575-642; HRDC domain
616-704 -20.000 34  PF14493.6; C0QFE1_DESAH/739-826; Helix-turn-helix domain
SCOP207 1-199 -79.000 46  d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}
200-401 -79.400 38  d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}
403-510 -28.500 24  d1oywa1 a.4.5.43 (A:407-516) DNA helicase RecQ DNA-binding domain {Escherichia coli [TaxId: 562]}
516-592 -26.400 37  d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase {Escherichia coli [TaxId: 562]}
VFDB 1-593 -150.000 39  [L] COG0514 Superfamily II DNA helicase
3-714 -35.900 16  [R] COG1201 Lhr-like helicases


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Jaroszewski L, Li W, Godzik A. Comparison of sequence profiles. Strategies for structural predictions using sequence information. Protein Sci. 2000 Feb;9(2):232-41.