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Results: 1-20 of 4053next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15894240|ref|NP_347589.1| hypothetical protein (CA_C0953) [Clostridium acetobutylicum ATCC 824] (Range: 1-132) 132 CSGID 2-132 -5.120 12  IDP00762 staphylocoagulase precursor SACOL0209 [Staphylococcus aureus subsp. aureus COL]
2 gi|15895268|ref|NP_348617.1| ABC-type transport system, ATPase component (CA_C1998) [Clostridium acetobutylicum ATCC 824] (Range: 1-224) 224 CSGID 4-224 -110.000 42  IDP02070 ABC transporter, ATP-binding protein [Coxiella burnetii RSA 493] CBU_1809 [Coxiella burnetii RSA 493]
3 gi|15895079|ref|NP_348428.1| ribosome-binding factor A (CA_C1803) [Clostridium acetobutylicum ATCC 824] (Range: 1-121) 121 CSGID 3-119 -54.300 26  IDP06174 gene: rbfA; ribosome-binding factor A [Helicobacter pylori J99] NP_223097 [Helicobacter pylori J99]
4 gi|15896238|ref|NP_349587.1| dimethyladenosine transferase (CA_C2986) [Clostridium acetobutylicum ATCC 824] (Range: 1-276) 276 CSGID 1-276 -112.000 68  IDP04517 gene: ksgA; dimethyladenosine transferase [Clostridium perfringens ATCC 13124] CPF_2840 [Clostridium perfringens ATCC 13124]
5 gi|15894673|ref|NP_348022.1| phosphoribosylglycinamide formyltransferase (CA_C1394) [Clostridium acetobutylicum ATCC 824] (Range: 1-204) 204 CSGID 1-204 -88.500 55  IDP04229 gene: purN; phosphoribosylglycinamide formyltransferase [Clostridium perfringens ATCC 13124] CPF_0676 [Clostridium perfringens ATCC 13124]
6 gi|15894664|ref|NP_348013.1| Alpha-ribazole-5'-phosphate phosphatase, CobC (CA_C1385) [Clostridium acetobutylicum ATCC 824] (Range: 1-191) 191 CSGID 2-191 -90.900 31  IDP90806 gene: phpB; alpha-ribazole phosphatase [Shigella flexneri 2a str. 2457T] S0665 [Shigella flexneri 2a str. 2457T]
7 gi|15894369|ref|NP_347718.1| Beta-glucosidase family protein (CA_C1084) [Clostridium acetobutylicum ATCC 824] (Range: 1-474) 474 CSGID 2-471 -136.000 37  IDP04454 gene: bglA; 6-phospho-beta-glucosidase [Yersinia pestis CO92] YPO1254 [Yersinia pestis CO92]
8 gi|15896898|ref|NP_350247.1| alpha/beta fold family hydrolase (CA_C3665) [Clostridium acetobutylicum ATCC 824] (Range: 1-265) 265 CSGID 4-264 -44.700 18  IDP06504 Surface protein from Gram-positive cocci, anchor region [Enterococcus faecium DO] EAN10897 [Enterococcus faecium DO]
9 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 1-500) 500 CSGID 5-498 -43.400 13  IDP05220 putative integral membrane protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1101 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
10 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 251-750) 500 CSGID 42-429 -40.300 12  IDP04218 gene: recC; exonuclease V subunit gamma [Salmonella typhimurium LT2] STM2996_1_1123 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
11 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 501-1000) 500 CSGID 2-431 -12.100 10  IDP04218 gene: recC; exonuclease V subunit gamma [Salmonella typhimurium LT2] STM2996_1_1123 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
419-494 -13.500 17  IDP92662 hypothetical protein LPW_01811 [Legionella pneumophila 130b] CBW98325 [Legionella pneumophila 130b]
12 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 751-1153) 403 CSGID 169-363 -17.700 16  IDP92662 hypothetical protein LPW_01811 [Legionella pneumophila 130b] CBW98325 [Legionella pneumophila 130b]
13 gi|15895492|ref|NP_348841.1| chemotaxis protein CheW (CA_C2224) [Clostridium acetobutylicum ATCC 824] (Range: 1-147) 147 CSGID 2-147 -72.200 32  IDP00100 gene: cheW; positive regulator of CheA protein activity NT01SF2345 [Shigella flexneri 2a str. 2457T]
14 gi|15894672|ref|NP_348021.1| phosphoribosylaminoimidazole synthetase (CA_C1393) [Clostridium acetobutylicum ATCC 824] (Range: 1-332) 332 CSGID 1-332 -101.000 69  IDP04228 gene: purM; phosphoribosylaminoimidazole synthetase [Clostridium perfringens ATCC 13124] CPF_0675 [Clostridium perfringens ATCC 13124]
15 gi|15893880|ref|NP_347229.1| riboflavin synthase subunit alpha (CA_C0591) [Clostridium acetobutylicum ATCC 824] (Range: 1-213) 213 CSGID 1-212 -96.100 46  IDP05517 gene: ribB; riboflavin synthase subunit alpha [Clostridium difficile 630] CD1699 [Peptoclostridium difficile 630]
16 gi|15893578|ref|NP_346927.1| hypothetical protein (CA_C0286) [Clostridium acetobutylicum ATCC 824] (Range: 1-244) 244 CSGID 1-241 -14.700 10  IDP00178 putative ABC transporter, integral membrane protein YPO3405 [Yersinia pestis CO92]
17 gi|15896862|ref|NP_350211.1| oligopeptide ABC transporter, ATPase component (CA_C3628) [Clostridium acetobutylicum ATCC 824] (Range: 1-322) 322 CSGID 7-322 -125.000 52  IDP01146 oligopeptide ABC transporter, ATP-binding protein BA_0235 [Bacillus anthracis str. Ames]
18 gi|15895331|ref|NP_348680.1| segregation and condensation protein A (CA_C2061) [Clostridium acetobutylicum ATCC 824] (Range: 1-249) 249 CSGID 44-108 -5.940 13  IDP91730 gene: CCL28; C-C motif chemokine 28 precursor [Homo sapiens] NP_683513 [Homo sapiens]
19 gi|15894096|ref|NP_347445.1| hydrogenase formation factor (hypE) (CA_C0809) [Clostridium acetobutylicum ATCC 824] (Range: 1-335) 335 CSGID 14-333 -66.700 17  IDP00521 gene: thiL; thiamine monophosphate kinase YPO3180 [Yersinia pestis CO92]
20 gi|15895945|ref|NP_349294.1| DNA helicase (CA_C2687) [Clostridium acetobutylicum ATCC 824] (Range: 1-714) 714 CSGID 1-344 -33.800 19  IDP06316 DEAD/DEAH box helicase [Streptococcus pneumoniae TIGR4] NP_345259 [Streptococcus pneumoniae TIGR4]
2-191 -68.700 30  IDP05084 putative ATP-dependent DNA helicase (together with adjacent 3 orfs) [Escherichia coli O157:H7 EDL933] Z4803 [Escherichia coli O157:H7 str. EDL933]
5-382 -11.100 18  IDP01191 Protein translocase subunit secA 2 BA_0882 [Bacillus anthracis str. Ames]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Igarashi Y, Eroshkin A, Gramatikova S, Gramatikoff K, Zhang Y, Smith JW,Osterman AL, Godzik A. CutDB: a proteolytic event database. Nucleic Acids Res. 2007 Jan;35(Database issue):D546-9. Epub 2006 Nov 16.