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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4052next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15894240|ref|NP_347589.1| hypothetical protein (CA_C0953) [Clostridium acetobutylicum ATCC 824] (Range: 1-132) 132 HGM_OVER 72-126 -4.200 12  HGC00789 gi|163310627|dbj|BABD01000073.1|7.0 TMP01036;
2 gi|15895268|ref|NP_348617.1| ABC-type transport system, ATPase component (CA_C1998) [Clostridium acetobutylicum ATCC 824] (Range: 1-224) 224 HGM_OVER 7-202 -3.830 12  PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]
3 gi|15895079|ref|NP_348428.1| ribosome-binding factor A (CA_C1803) [Clostridium acetobutylicum ATCC 824] (Range: 1-121) 121 HGM_OVER 9-121 -3.620 10  PB048276 _Gut.Meta.Jp.0112258_ gi|163310311|dbj|BABD01000385.1||2 (- 258:885~0 complete)
4 gi|15896238|ref|NP_349587.1| dimethyladenosine transferase (CA_C2986) [Clostridium acetobutylicum ATCC 824] (Range: 1-276) 276 HGM_OVER 21-225 -3.540 10  PB015954 Q6WBB3_BIFBR/1-225 PB015954; Pfam-B_15954;
5 gi|15894673|ref|NP_348022.1| phosphoribosylglycinamide formyltransferase (CA_C1394) [Clostridium acetobutylicum ATCC 824] (Range: 1-204) 204 HGM_OVER 3-47 -2.770 HGC00870 gi|163286116|dbj|BABD01024572.1|2.0 TMP01154;
6 gi|15894664|ref|NP_348013.1| Alpha-ribazole-5'-phosphate phosphatase, CobC (CA_C1385) [Clostridium acetobutylicum ATCC 824] (Range: 1-191) 191 HGM_OVER 1-142 -3.520 13  PB000716 Q60CS7_METCA/1-294 PB000716; Pfam-B_716;
7 gi|15894369|ref|NP_347718.1| Beta-glucosidase family protein (CA_C1084) [Clostridium acetobutylicum ATCC 824] (Range: 1-474) 474 HGM_OVER 10-117 -2.980 13  PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;
8 gi|15896898|ref|NP_350247.1| alpha/beta fold family hydrolase (CA_C3665) [Clostridium acetobutylicum ATCC 824] (Range: 1-265) 265 HGM_OVER 62-261 -4.440 11  PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;
9 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 1-500) 500 HGM_OVER 44-229 -3.430 PB022697 Q5LAY4_BACFN/1-165 PB022697; Pfam-B_22697;
10 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 251-750) 500 HGM_OVER 256-344 -3.370 15  HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636;
11 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 501-1000) 500 HGM_OVER 369-469 -3.240 14  HGC00878 gi|162869432|dbj|BABB01000575.1|7.0 TMP01167;
12 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 751-1153) 403 HGM_OVER 119-219 -3.080 14  HGC00878 gi|162869432|dbj|BABB01000575.1|7.0 TMP01167;
13 gi|15895492|ref|NP_348841.1| chemotaxis protein CheW (CA_C2224) [Clostridium acetobutylicum ATCC 824] (Range: 1-147) 147 HGM_OVER 1-47 -3.600 14  PB071107 _Gut.Meta.Jp.0066071_ gi|162701604|dbj|BAAY01026246.1||2 (+ 344:749~0 complete)
14 gi|15894672|ref|NP_348021.1| phosphoribosylaminoimidazole synthetase (CA_C1393) [Clostridium acetobutylicum ATCC 824] (Range: 1-332) 332 HGM_OVER 1-192 -2.270 15  PB015879 Q5LJ14_BACFN/120-411 PB015879; Pfam-B_15879;
15 gi|15893880|ref|NP_347229.1| riboflavin synthase subunit alpha (CA_C0591) [Clostridium acetobutylicum ATCC 824] (Range: 1-213) 213 HGM_OVER 129-213 -4.290 PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
16 gi|15893578|ref|NP_346927.1| hypothetical protein (CA_C0286) [Clostridium acetobutylicum ATCC 824] (Range: 1-244) 244 HGM_OVER 93-191 -5.230 PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;
17 gi|15896862|ref|NP_350211.1| oligopeptide ABC transporter, ATPase component (CA_C3628) [Clostridium acetobutylicum ATCC 824] (Range: 1-322) 322 HGM_OVER 46-225 -3.040 11  PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]
18 gi|15895331|ref|NP_348680.1| segregation and condensation protein A (CA_C2061) [Clostridium acetobutylicum ATCC 824] (Range: 1-249) 249 HGM_OVER 21-114 -3.400 14  HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;
19 gi|15894096|ref|NP_347445.1| hydrogenase formation factor (hypE) (CA_C0809) [Clostridium acetobutylicum ATCC 824] (Range: 1-335) 335 HGM_OVER 94-283 -2.740 HGC00787 gi|162657578|dbj|BAAX01002027.1|2.0 TMP01033;
20 gi|15895945|ref|NP_349294.1| DNA helicase (CA_C2687) [Clostridium acetobutylicum ATCC 824] (Range: 1-714) 714 HGM_OVER 37-152 -5.000 17  PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.