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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4053next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15894240|ref|NP_347589.1| hypothetical protein (CA_C0953) [Clostridium acetobutylicum ATCC 824] 132 NEW_HUMAN_DOMAINS 93-132 -6.120 22  tr|F8VX10|F8VX10_HUMAN Uncharacterized protein OS=Homo sapiens GN=C12orf41 PE=4 SV=1
2 gi|15895268|ref|NP_348617.1| ABC-type transport system, ATPase component (CA_C1998) [Clostridium acetobutylicum ATCC 824] 224 NEW_HUMAN_DOMAINS 7-51 -7.760 sp|Q6P2S7|GNN_HUMAN Tetratricopeptide repeat protein GNN OS=Homo sapiens GN=GNN PE=2 SV=3
3 gi|15895079|ref|NP_348428.1| ribosome-binding factor A (CA_C1803) [Clostridium acetobutylicum ATCC 824] 121 NEW_HUMAN_DOMAINS 25-90 -5.970 16  sp|Q92889|XPF_HUMAN DNA repair endonuclease XPF OS=Homo sapiens GN=ERCC4 PE=1 SV=3
4 gi|15896238|ref|NP_349587.1| dimethyladenosine transferase (CA_C2986) [Clostridium acetobutylicum ATCC 824] 276 NEW_HUMAN_DOMAINS 24-150 -6.660 13  tr|E9PL53|E9PL53_HUMAN Uncharacterized protein OS=Homo sapiens GN=SAAL1 PE=4 SV=1
5 gi|15894673|ref|NP_348022.1| phosphoribosylglycinamide formyltransferase (CA_C1394) [Clostridium acetobutylicum ATCC 824] 204 NEW_HUMAN_DOMAINS 71-121 -5.930 19  sp|Q8TEE9|SAP25_HUMAN Histone deacetylase complex subunit SAP25 OS=Homo sapiens GN=SAP25 PE=1 SV=2
6 gi|15894664|ref|NP_348013.1| Alpha-ribazole-5'-phosphate phosphatase, CobC (CA_C1385) [Clostridium acetobutylicum ATCC 824] 191 NEW_HUMAN_DOMAINS 49-103 -6.620 12  sp|Q6L9W6|B4GN3_HUMAN N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 2 OS=Homo sapiens GN=B4GALNT3 PE=1 SV=2
7 gi|15894369|ref|NP_347718.1| Beta-glucosidase family protein (CA_C1084) [Clostridium acetobutylicum ATCC 824] 474 NEW_HUMAN_DOMAINS 62-151 -6.340 12  sp|Q6EMB2|TTLL5_HUMAN Tubulin polyglutamylase TTLL5 OS=Homo sapiens GN=TTLL5 PE=1 SV=3
8 gi|15896898|ref|NP_350247.1| alpha/beta fold family hydrolase (CA_C3665) [Clostridium acetobutylicum ATCC 824] 265 NEW_HUMAN_DOMAINS 5-77 -10.400 tr|F8WBB3|F8WBB3_HUMAN Uncharacterized protein OS=Homo sapiens GN=ABHD1 PE=4 SV=1
9 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] 500 NEW_HUMAN_DOMAINS 64-189 -9.340 10  tr|B4DZ31|B4DZ31_HUMAN Uncharacterized protein OS=Homo sapiens GN=C12orf48 PE=2 SV=1
10 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] 500 NEW_HUMAN_DOMAINS 26-425 -4.880 10  sp|Q63HN8|RN213_HUMAN RING finger protein 213 OS=Homo sapiens GN=RNF213 PE=1 SV=2
11 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] 500 NEW_HUMAN_DOMAINS 260-352 -5.960 12  sp|Q9BQP7|CT072_HUMAN Uncharacterized protein C20orf72 OS=Homo sapiens GN=C20orf72 PE=1 SV=1
12 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] 403 NEW_HUMAN_DOMAINS 63-204 -4.920 12  tr|B4DQ88|B4DQ88_HUMAN Uncharacterized protein OS=Homo sapiens GN=EMR2 PE=2 SV=1
13 gi|15895492|ref|NP_348841.1| chemotaxis protein CheW (CA_C2224) [Clostridium acetobutylicum ATCC 824] 147 NEW_HUMAN_DOMAINS 49-98 -5.340 16  sp|A3KN83|SBNO1_HUMAN Protein strawberry notch homolog 1 OS=Homo sapiens GN=SBNO1 PE=1 SV=1
14 gi|15894672|ref|NP_348021.1| phosphoribosylaminoimidazole synthetase (CA_C1393) [Clostridium acetobutylicum ATCC 824] 332 NEW_HUMAN_DOMAINS 92-151 -4.310 11  sp|Q5U5X8|CL034_HUMAN Uncharacterized protein C12orf34 OS=Homo sapiens GN=C12orf34 PE=2 SV=1
15 gi|15893880|ref|NP_347229.1| riboflavin synthase subunit alpha (CA_C0591) [Clostridium acetobutylicum ATCC 824] 213 NEW_HUMAN_DOMAINS 3-68 -5.500 18  sp|Q5R3F8|LRFN6_HUMAN Leucine-rich repeat and fibronectin type-III domain-containing protein 6 OS=Homo sapiens GN=ELFN2 PE=1 SV=1
16 gi|15893578|ref|NP_346927.1| hypothetical protein (CA_C0286) [Clostridium acetobutylicum ATCC 824] 244 NEW_HUMAN_DOMAINS 6-85 -5.930 11  sp|C9JH25|PRRT4_HUMAN Proline-rich transmembrane protein 4 OS=Homo sapiens GN=PRRT4 PE=2 SV=1
17 gi|15896862|ref|NP_350211.1| oligopeptide ABC transporter, ATPase component (CA_C3628) [Clostridium acetobutylicum ATCC 824] 322 NEW_HUMAN_DOMAINS 105-263 -4.820 12  sp|Q9H6A9|PCX3_HUMAN Pecanex-like protein 3 OS=Homo sapiens GN=PCNXL3 PE=1 SV=2
18 gi|15895331|ref|NP_348680.1| segregation and condensation protein A (CA_C2061) [Clostridium acetobutylicum ATCC 824] 249 NEW_HUMAN_DOMAINS 7-111 -6.310 15  tr|B4DZ31|B4DZ31_HUMAN Uncharacterized protein OS=Homo sapiens GN=C12orf48 PE=2 SV=1
19 gi|15894096|ref|NP_347445.1| hydrogenase formation factor (hypE) (CA_C0809) [Clostridium acetobutylicum ATCC 824] 335 NEW_HUMAN_DOMAINS 103-247 -5.440 15  sp|Q6Y2X3|DJC14_HUMAN DnaJ homolog subfamily C member 14 OS=Homo sapiens GN=DNAJC14 PE=2 SV=2
20 gi|15895945|ref|NP_349294.1| DNA helicase (CA_C2687) [Clostridium acetobutylicum ATCC 824] 714 NEW_HUMAN_DOMAINS 50-185 -4.160 13  sp|Q8IXR9|CL056_HUMAN Uncharacterized protein C12orf56 OS=Homo sapiens GN=C12orf56 PE=2 SV=2

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.