FFAS03 list of results C.acetobutylicum / VFDB

Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15894240|ref|NP_347589.1| hypothetical protein (CA_C0953) [Clostridium acetobutylicum ATCC 824] (Range: 1-132) 132 VFDB 42-132 -6.430 15 [R] KOG1030 Predicted Ca2+-dependent phospholipid-binding protein
2 gi|15895268|ref|NP_348617.1| ABC-type transport system, ATPase component (CA_C1998) [Clostridium acetobutylicum ATCC 824] (Range: 1-224) 224 VFDB 2-224 -108.000 40 [Q] COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component
3 gi|15895079|ref|NP_348428.1| ribosome-binding factor A (CA_C1803) [Clostridium acetobutylicum ATCC 824] (Range: 1-121) 121 VFDB 2-121 -60.500 30 [J] COG0858 Ribosome-binding factor A
4 gi|15896238|ref|NP_349587.1| dimethyladenosine transferase (CA_C2986) [Clostridium acetobutylicum ATCC 824] (Range: 1-276) 276 VFDB 2-276 -93.900 26 [J] COG0030 Dimethyladenosine transferase (rRNA methylation)
5 gi|15894673|ref|NP_348022.1| phosphoribosylglycinamide formyltransferase (CA_C1394) [Clostridium acetobutylicum ATCC 824] (Range: 1-204) 204 VFDB 2-204 -81.500 40 [G] KOG3076 5`-phosphoribosylglycinamide formyltransferase
6 gi|15894664|ref|NP_348013.1| Alpha-ribazole-5'-phosphate phosphatase, CobC (CA_C1385) [Clostridium acetobutylicum ATCC 824] (Range: 1-191) 191 VFDB 2-190 -76.900 23 [G] COG0588 Phosphoglycerate mutase 1
7 gi|15894369|ref|NP_347718.1| Beta-glucosidase family protein (CA_C1084) [Clostridium acetobutylicum ATCC 824] (Range: 1-474) 474 VFDB 2-470 -136.000 39 [G] COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase
8 gi|15896898|ref|NP_350247.1| alpha/beta fold family hydrolase (CA_C3665) [Clostridium acetobutylicum ATCC 824] (Range: 1-265) 265 VFDB 2-264 -65.000 25 [I] KOG4667 Predicted esterase
9 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 1-500) 500 VFDB 1-500 -103.000 29 [L] COG3857 ATP-dependent nuclease, subunit B
10 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 251-750) 500 VFDB 1-500 -96.900 30 [L] COG3857 ATP-dependent nuclease, subunit B
11 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 501-1000) 500 VFDB 1-500 -122.000 32 [L] COG3857 ATP-dependent nuclease, subunit B
12 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 751-1153) 403 VFDB 1-396 -101.000 35 [L] COG3857 ATP-dependent nuclease, subunit B
13 gi|15895492|ref|NP_348841.1| chemotaxis protein CheW (CA_C2224) [Clostridium acetobutylicum ATCC 824] (Range: 1-147) 147 VFDB 2-147 -58.700 19 [NT] COG0835 Chemotaxis signal transduction protein
14 gi|15894672|ref|NP_348021.1| phosphoribosylaminoimidazole synthetase (CA_C1393) [Clostridium acetobutylicum ATCC 824] (Range: 1-332) 332 VFDB 2-329 -98.200 51 [F] COG0150 Phosphoribosylaminoimidazole (AIR) synthetase
15 gi|15893880|ref|NP_347229.1| riboflavin synthase subunit alpha (CA_C0591) [Clostridium acetobutylicum ATCC 824] (Range: 1-213) 213 VFDB 1-203 -88.600 34 [H] KOG3310 Riboflavin synthase alpha chain
16 gi|15893578|ref|NP_346927.1| hypothetical protein (CA_C0286) [Clostridium acetobutylicum ATCC 824] (Range: 1-244) 244 VFDB 1-243 -84.300 17 [S] COG4200 Uncharacterized protein conserved in bacteria
17 gi|15896862|ref|NP_350211.1| oligopeptide ABC transporter, ATPase component (CA_C3628) [Clostridium acetobutylicum ATCC 824] (Range: 1-322) 322 VFDB 7-322 -126.000 52 [E] COG4608 ABC-type oligopeptide transport system, ATPase component
18 gi|15895331|ref|NP_348680.1| segregation and condensation protein A (CA_C2061) [Clostridium acetobutylicum ATCC 824] (Range: 1-249) 249 VFDB 2-249 -85.900 29 [S] COG1354 Uncharacterized conserved protein
19 gi|15894096|ref|NP_347445.1| hydrogenase formation factor (hypE) (CA_C0809) [Clostridium acetobutylicum ATCC 824] (Range: 1-335) 335 VFDB 2-335 -95.400 51 [O] COG0309 Hydrogenase maturation factor
20 gi|15895945|ref|NP_349294.1| DNA helicase (CA_C2687) [Clostridium acetobutylicum ATCC 824] (Range: 1-714) 714 VFDB 1-593 -150.000 39 [L] COG0514 Superfamily II DNA helicase
3-714 -35.900 16 [R] COG1201 Lhr-like helicases

FFAS is supported by the NIH grant R01-GM087218-01

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#	Query	Length	Result vs.	Range	Score	%id	Covered by template(s)
1	`gi\|15894240\|ref\|NP_347589.1\| hypothetical protein (CA_C0953) [Clostridium acetobutylicum ATCC 824] (Range: 1-132)`	`132`	`VFDB`	`42-132`	`-6.430`	`15`	`[R] KOG1030 Predicted Ca2+-dependent phospholipid-binding protein`
2	`gi\|15895268\|ref\|NP_348617.1\| ABC-type transport system, ATPase component (CA_C1998) [Clostridium acetobutylicum ATCC 824] (Range: 1-224)`	`224`	`VFDB`	`2-224`	`-108.000`	`40`	`[Q] COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component`
3	`gi\|15895079\|ref\|NP_348428.1\| ribosome-binding factor A (CA_C1803) [Clostridium acetobutylicum ATCC 824] (Range: 1-121)`	`121`	`VFDB`	`2-121`	`-60.500`	`30`	`[J] COG0858 Ribosome-binding factor A`
4	`gi\|15896238\|ref\|NP_349587.1\| dimethyladenosine transferase (CA_C2986) [Clostridium acetobutylicum ATCC 824] (Range: 1-276)`	`276`	`VFDB`	`2-276`	`-93.900`	`26`	`[J] COG0030 Dimethyladenosine transferase (rRNA methylation)`
5	`gi\|15894673\|ref\|NP_348022.1\| phosphoribosylglycinamide formyltransferase (CA_C1394) [Clostridium acetobutylicum ATCC 824] (Range: 1-204)`	`204`	`VFDB`	`2-204`	`-81.500`	`40`	[G] KOG3076 5`-phosphoribosylglycinamide formyltransferase
6	`gi\|15894664\|ref\|NP_348013.1\| Alpha-ribazole-5'-phosphate phosphatase, CobC (CA_C1385) [Clostridium acetobutylicum ATCC 824] (Range: 1-191)`	`191`	`VFDB`	`2-190`	`-76.900`	`23`	`[G] COG0588 Phosphoglycerate mutase 1`
7	`gi\|15894369\|ref\|NP_347718.1\| Beta-glucosidase family protein (CA_C1084) [Clostridium acetobutylicum ATCC 824] (Range: 1-474)`	`474`	`VFDB`	`2-470`	`-136.000`	`39`	`[G] COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase`
8	`gi\|15896898\|ref\|NP_350247.1\| alpha/beta fold family hydrolase (CA_C3665) [Clostridium acetobutylicum ATCC 824] (Range: 1-265)`	`265`	`VFDB`	`2-264`	`-65.000`	`25`	`[I] KOG4667 Predicted esterase`
9	`gi\|15895531\|ref\|NP_348880.1\| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 1-500)`	`500`	`VFDB`	`1-500`	`-103.000`	`29`	`[L] COG3857 ATP-dependent nuclease, subunit B`
10	`gi\|15895531\|ref\|NP_348880.1\| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 251-750)`	`500`	`VFDB`	`1-500`	`-96.900`	`30`	`[L] COG3857 ATP-dependent nuclease, subunit B`
11	`gi\|15895531\|ref\|NP_348880.1\| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 501-1000)`	`500`	`VFDB`	`1-500`	`-122.000`	`32`	`[L] COG3857 ATP-dependent nuclease, subunit B`
12	`gi\|15895531\|ref\|NP_348880.1\| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] (Range: 751-1153)`	`403`	`VFDB`	`1-396`	`-101.000`	`35`	`[L] COG3857 ATP-dependent nuclease, subunit B`
13	`gi\|15895492\|ref\|NP_348841.1\| chemotaxis protein CheW (CA_C2224) [Clostridium acetobutylicum ATCC 824] (Range: 1-147)`	`147`	`VFDB`	`2-147`	`-58.700`	`19`	`[NT] COG0835 Chemotaxis signal transduction protein`
14	`gi\|15894672\|ref\|NP_348021.1\| phosphoribosylaminoimidazole synthetase (CA_C1393) [Clostridium acetobutylicum ATCC 824] (Range: 1-332)`	`332`	`VFDB`	`2-329`	`-98.200`	`51`	`[F] COG0150 Phosphoribosylaminoimidazole (AIR) synthetase`
15	`gi\|15893880\|ref\|NP_347229.1\| riboflavin synthase subunit alpha (CA_C0591) [Clostridium acetobutylicum ATCC 824] (Range: 1-213)`	`213`	`VFDB`	`1-203`	`-88.600`	`34`	`[H] KOG3310 Riboflavin synthase alpha chain`
16	`gi\|15893578\|ref\|NP_346927.1\| hypothetical protein (CA_C0286) [Clostridium acetobutylicum ATCC 824] (Range: 1-244)`	`244`	`VFDB`	`1-243`	`-84.300`	`17`	`[S] COG4200 Uncharacterized protein conserved in bacteria`
17	`gi\|15896862\|ref\|NP_350211.1\| oligopeptide ABC transporter, ATPase component (CA_C3628) [Clostridium acetobutylicum ATCC 824] (Range: 1-322)`	`322`	`VFDB`	`7-322`	`-126.000`	`52`	`[E] COG4608 ABC-type oligopeptide transport system, ATPase component`
18	`gi\|15895331\|ref\|NP_348680.1\| segregation and condensation protein A (CA_C2061) [Clostridium acetobutylicum ATCC 824] (Range: 1-249)`	`249`	`VFDB`	`2-249`	`-85.900`	`29`	`[S] COG1354 Uncharacterized conserved protein`
19	`gi\|15894096\|ref\|NP_347445.1\| hydrogenase formation factor (hypE) (CA_C0809) [Clostridium acetobutylicum ATCC 824] (Range: 1-335)`	`335`	`VFDB`	`2-335`	`-95.400`	`51`	`[O] COG0309 Hydrogenase maturation factor`
20	`gi\|15895945\|ref\|NP_349294.1\| DNA helicase (CA_C2687) [Clostridium acetobutylicum ATCC 824] (Range: 1-714)`	`714`	`VFDB`	`1-593`	`-150.000`	`39`	`[L] COG0514 Superfamily II DNA helicase`
				`3-714`	`-35.900`	`16`	`[R] COG1201 Lhr-like helicases`