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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 968next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15604718|ref|NP_219502.1| hypothetical protein (CT875) [Chlamydia trachomatis D/UW-3/CX] 591 HGM_OVER 299-381 -4.320 17  HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;
2 gi|15604719|ref|NP_219503.1| hypothetical protein (CT001) [Chlamydia trachomatis D/UW-3/CX] 90 HGM_OVER 22-78 -3.940 13  HGC01215 gi|162843249|dbj|BABA01001460.1|3.0 TMP01713;
3 gi|15604720|ref|NP_219504.1| aspartyl/glutamyl-tRNA amidotransferase subunit C (CT002) [Chlamydia trachomatis D/UW-3/CX] 100 HGM_OVER 1-39 -3.030 12  PB060121 Q64SA7_BACFR/1-251 PB060121; Pfam-B_60121;
4 gi|15604721|ref|NP_219505.1| aspartyl/glutamyl-tRNA amidotransferase subunit A (CT003) [Chlamydia trachomatis D/UW-3/CX] 491 HGM_OVER 25-121 -2.240 HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;
5 gi|15604722|ref|NP_219506.1| aspartyl/glutamyl-tRNA amidotransferase subunit B (CT004) [Chlamydia trachomatis D/UW-3/CX] 488 HGM_OVER 166-292 -2.340 15  PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;
6 gi|15604723|ref|NP_219507.1| hypothetical protein (CT005) [Chlamydia trachomatis D/UW-3/CX] 363 HGM_OVER 44-164 -5.790 15  PB053244 _HOMD.0087087_ pint_c_2_2642 Prevotella intermedia 17 [158005 - 157583] (REVERSE SENSE) ORF
7 gi|15604724|ref|NP_219508.1| hypothetical protein (CT006) [Chlamydia trachomatis D/UW-3/CX] 189 HGM_OVER 87-157 -5.350 PB009534 gi|153852721|ref|ZP_01994158.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]gi|149754363|gb|EDM64294.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]
8 gi|15604725|ref|NP_219509.1| hypothetical protein (CT007) [Chlamydia trachomatis D/UW-3/CX] 316 HGM_OVER 1-199 -10.700 10  PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;
9 gi|15604726|ref|NP_219510.1| ribonuclease HIII (CT008) [Chlamydia trachomatis D/UW-3/CX] 300 HGM_OVER 92-156 -3.540 18  HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;
10 gi|15604727|ref|NP_219511.1| HTH transcriptional regulator (CT009) [Chlamydia trachomatis D/UW-3/CX] 143 HGM_OVER 1-59 -5.700 11  PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;
11 gi|15604728|ref|NP_219512.1| lipid A biosynthesis lauroyl acyltransferase (CT010) [Chlamydia trachomatis D/UW-3/CX] 455 HGM_OVER 28-317 -4.440 PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;
12 gi|15604729|ref|NP_219513.1| hypothetical protein (CT011) [Chlamydia trachomatis D/UW-3/CX] 418 HGM_OVER 1-172 -6.260 PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;
13 gi|15604730|ref|NP_219514.1| hypothetical protein (CT012) [Chlamydia trachomatis D/UW-3/CX] 264 HGM_OVER 105-216 -5.230 PB004996 Q5NNS6_ZYMMO/1-150 PB004996; Pfam-B_4996;
14 gi|15604731|ref|NP_219515.1| cytochrome d ubiquinol oxidase subunit I (CT013) [Chlamydia trachomatis D/UW-3/CX] 446 HGM_OVER 219-435 -3.670 10  HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;
15 gi|15604732|ref|NP_219516.1| cytochrome d ubiquinol oxidase subunit II (CT014) [Chlamydia trachomatis D/UW-3/CX] 353 HGM_OVER 23-173 -3.550 PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]
16 gi|15604733|ref|NP_219517.1| ATPase (CT015) [Chlamydia trachomatis D/UW-3/CX] 434 HGM_OVER 229-406 -3.760 13  PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;
17 gi|15604734|ref|NP_219518.1| hypothetical protein (CT016) [Chlamydia trachomatis D/UW-3/CX] 242 HGM_OVER 142-239 -5.580 14  HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
18 gi|15604735|ref|NP_219519.1| hypothetical protein (CT017) [Chlamydia trachomatis D/UW-3/CX] 433 HGM_OVER 40-157 -5.920 15  PB044572 Q8A533_BACTN/1-343 PB044572; Pfam-B_44572;
19 gi|15604736|ref|NP_219520.1| hypothetical protein (CT018) [Chlamydia trachomatis D/UW-3/CX] 157 HGM_OVER 24-122 -4.040 HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;
20 gi|15604737|ref|NP_219521.1| isoleucyl-tRNA synthetase (CT019) [Chlamydia trachomatis D/UW-3/CX] (Range: 1-500) 500 HGM_OVER 13-396 -4.120 12  PB002589 gi|91201099|emb|CAJ74158.1| hypothetical protein [Candidatus Kuenenia stuttgartiensis]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;