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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 968next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15604718|ref|NP_219502.1| hypothetical protein (CT875) [Chlamydia trachomatis D/UW-3/CX] 591 PfamA32U 496-565 -6.400 13  PF07495.13; Q8A3X8_BACTN/687-750; Y_Y_Y domain
2 gi|15604719|ref|NP_219503.1| hypothetical protein (CT001) [Chlamydia trachomatis D/UW-3/CX] 90 PfamA32U 4-63 -36.700 20  PF04070.12; R5JWM3_9CLOT/4-61; Domain of unknown function (DUF378 topsan)
3 gi|15604720|ref|NP_219504.1| aspartyl/glutamyl-tRNA amidotransferase subunit C (CT002) [Chlamydia trachomatis D/UW-3/CX] 100 PfamA32U 23-95 -34.900 15  PF02686.15; F0SQ10_RUBBR/21-91; Glu-tRNAGln amidotransferase C subunit
4 gi|15604721|ref|NP_219505.1| aspartyl/glutamyl-tRNA amidotransferase subunit A (CT003) [Chlamydia trachomatis D/UW-3/CX] 491 PfamA32U 22-462 -65.000 21  PF01425.21; AMDS_ASPOR/74-533; Amidase
5 gi|15604722|ref|NP_219506.1| aspartyl/glutamyl-tRNA amidotransferase subunit B (CT004) [Chlamydia trachomatis D/UW-3/CX] 488 PfamA32U 10-297 -122.000 42  PF02934.15; Q11V48_CYTH3/11-295; GatB/GatE catalytic domain
336-485 -50.100 40  PF02637.18; GATB_GEOKA/326-473; GatB domain
6 gi|15604723|ref|NP_219507.1| hypothetical protein (CT005) [Chlamydia trachomatis D/UW-3/CX] 363 PfamA32U 16-363 -76.800 100  PF17461.2; Y005_CHLTR/16-363; Family of unknown function (DUF5423 topsan)
7 gi|15604724|ref|NP_219508.1| hypothetical protein (CT006) [Chlamydia trachomatis D/UW-3/CX] 189 PfamA32U 5-157 -105.000 100  PF17459.2; Y006_CHLTR/5-157; Family of unknown function (DUF5422 topsan)
8 gi|15604725|ref|NP_219509.1| hypothetical protein (CT007) [Chlamydia trachomatis D/UW-3/CX] 316 PfamA32U 1-242 -15.800 10  PF06316.11; Q9LA63_9CAUD/1-199; Enterobacterial Ail/Lom protein
42-314 -21.800 PF09381.10; D1AL54_SEBTE/71-353; Outer membrane protein G (OmpG)
9 gi|15604726|ref|NP_219510.1| ribonuclease HIII (CT008) [Chlamydia trachomatis D/UW-3/CX] 300 PfamA32U 4-79 -20.900 16  PF11858.8; RNH3_OCEIH/3-77; Domain of unknown function (DUF3378 topsan)
89-291 -62.600 17  PF01351.18; RNH2A_SCHPO/66-277; Ribonuclease HII
10 gi|15604727|ref|NP_219511.1| HTH transcriptional regulator (CT009) [Chlamydia trachomatis D/UW-3/CX] 143 PfamA32U 13-83 -37.100 25  PF12844.7; Q03EQ2_PEDPA/10-80; Helix-turn-helix domain
11 gi|15604728|ref|NP_219512.1| lipid A biosynthesis lauroyl acyltransferase (CT010) [Chlamydia trachomatis D/UW-3/CX] 455 PfamA32U 14-316 -80.300 20  PF03279.13; LPXL_HAEIN/6-300; Bacterial lipid A biosynthesis acyltransferase
12 gi|15604729|ref|NP_219513.1| hypothetical protein (CT011) [Chlamydia trachomatis D/UW-3/CX] 418 PfamA32U 142-226 -18.000 13  PF07949.12; Q63H46_BACCZ/240-319; YbbR-like protein
13 gi|15604730|ref|NP_219514.1| hypothetical protein (CT012) [Chlamydia trachomatis D/UW-3/CX] 264 PfamA32U 109-230 -63.700 39  PF02457.16; Q3A5V7_PELCD/116-235; DisA bacterial checkpoint controller nucleotide-binding
14 gi|15604731|ref|NP_219515.1| cytochrome d ubiquinol oxidase subunit I (CT013) [Chlamydia trachomatis D/UW-3/CX] 446 PfamA32U 6-435 -131.000 29  PF01654.17; D7BPD8_ARCHD/6-476; Cytochrome bd terminal oxidase subunit I
15 gi|15604732|ref|NP_219516.1| cytochrome d ubiquinol oxidase subunit II (CT014) [Chlamydia trachomatis D/UW-3/CX] 353 PfamA32U 9-343 -106.000 26  PF02322.15; C6X9F9_METGS/10-365; Cytochrome bd terminal oxidase subunit II
16 gi|15604733|ref|NP_219517.1| ATPase (CT015) [Chlamydia trachomatis D/UW-3/CX] 434 PfamA32U 5-138 -35.900 23  PF13638.6; D2R0J2_PIRSD/11-151; PIN domain
222-434 -71.300 30  PF02562.16; A0LK93_SYNFM/124-328; PhoH-like protein
17 gi|15604734|ref|NP_219518.1| hypothetical protein (CT016) [Chlamydia trachomatis D/UW-3/CX] 242 PfamA32U 170-241 -9.850 16  PF14216.6; A0A1X7UQX7_AMPQE/11-98; Domain of unknown function (DUF4326 topsan)
18 gi|15604735|ref|NP_219519.1| hypothetical protein (CT017) [Chlamydia trachomatis D/UW-3/CX] 433 PfamA32U 42-96 -17.100 23  PF06347.13; Q2YQQ5_BRUA2/49-105; Bacterial SH3 domain
102-159 -16.300 19  PF08239.11; E9IE92_SOLIN/305-375; Bacterial SH3 domain
19 gi|15604736|ref|NP_219520.1| hypothetical protein (CT018) [Chlamydia trachomatis D/UW-3/CX] 157 PfamA32U 17-119 -7.330 PF01594.16; Y338_HAEIN/10-332; AI-2E family transporter
20 gi|15604737|ref|NP_219521.1| isoleucyl-tRNA synthetase (CT019) [Chlamydia trachomatis D/UW-3/CX] 500 PfamA32U 18-477 -52.400 23  PF00133.22; SYV_YEAST/156-780; tRNA synthetases class I (I, L, M and V)

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.