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Results: 1-20 of 8581next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 [H] COG0001 Glutamate-1-semialdehyde aminotransferase 411 CSGID 1-411 -105.000 58  IDP02781 gene: hemL-2; glutamate-1-semialdehyde aminotransferase [Bacillus anthracis str. `Ames Ancestor`] GBAA4693 [Bacillus anthracis str. `Ames Ancestor`]
2 [E] COG0002 Acetylglutamate semialdehyde dehydrogenase 336 CSGID 1-335 -108.000 40  IDP00139 gene: argC; N-acetyl-gamma-glutamyl-phosphate reductase BA_4355 [Bacillus anthracis str. Ames]
3 [P] COG0003 Oxyanion-translocating ATPase 396 CSGID 1-238 -20.300 14  IDP01443 ParA family protein VC2061 [Vibrio cholerae O1 biovar El Tor str. N16961]
3-307 -18.200 18  IDP01890 ATPase, ParA family [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0063c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
3-351 -17.900 18  IDP04010 gene: minD; septum site-determining protein MinD [Clostridium perfringens ATCC 13124] CPF_2393 [Clostridium perfringens ATCC 13124]
326-396 -10.400 25  IDP01107 heat shock protein, Hsp20 family BA_2250 [Bacillus anthracis str. Ames]
4 [P] COG0004 Ammonia permease 470 CSGID 27-449 -5.940 14  IDP92565 nonstructural protein 1, partial [Dengue virus 2] AAA66406 [Dengue virus 2]
5 [F] COG0005 Purine nucleoside phosphorylase 271 CSGID 20-268 -19.900 14  IDP04345 uridine phosphorylase [Vibrio cholerae O1 biovar eltor str. N16961] VC1034 [Vibrio cholerae O1 biovar El Tor str. N16961]
6 [E] COG0006 Xaa-Pro aminopeptidase 356 CSGID 4-356 -107.000 32  IDP00677 proline dipeptidase SACOL1588 [Staphylococcus aureus subsp. aureus COL]
7 [H] COG0007 Uroporphyrinogen-III methylase 292 CSGID 22-285 -100.000 38  IDP93866 uroporphyrinogen-III methyltransferase [Yersinia enterocolitica subsp. palearctica Y11] YP_006005134 [Yersinia enterocolitica subsp. palearctica Y11]
8 [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases 554 CSGID 2-554 -156.000 86  IDP05277 gene: glnS; glutaminyl-tRNA synthetase [Yersinia pestis CO92] YPO2630 [Yersinia pestis CO92]
9 [J] COG0009 Putative translation factor (SUA5) 346 CSGID 1-346 -110.000 61  IDP01864 sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. `Ames Ancestor`] GBAA5568 [Bacillus anthracis str. `Ames Ancestor`]
10 [E] COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family 306 CSGID 91-306 -7.350 14  IDP01387 protease DO VC0566 [Vibrio cholerae O1 biovar El Tor str. N16961]
11 [S] COG0011 Uncharacterized conserved protein 94 CSGID 8-56 -5.270 10  IDP05084 putative ATP-dependent DNA helicase (together with adjacent 3 orfs) [Escherichia coli O157:H7 EDL933] Z4803 [Escherichia coli O157:H7 str. EDL933]
12 [J] COG0012 Predicted GTPase, probable translation factor 397 CSGID 1-396 -99.800 26  IDP02675 GTP-binding protein YchF [Coxiella burnetii RSA 493] CBU_1842 [Coxiella burnetii RSA 493]
13 [J] COG0013 Alanyl-tRNA synthetase 872 CSGID 1-872 -215.000 52  IDP05327 gene: alaS; alanyl-tRNA synthetase [Listeria monocytogenes EGD-e] lmo1504 [Listeria monocytogenes EGD-e]
14 [E] COG0014 Gamma-glutamyl phosphate reductase 417 CSGID 2-414 -70.100 16  IDP02108 gene: aldB; aldehyde dehydrogenase B [Salmonella typhimurium LT2] STM3680 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
15 [F] COG0015 Adenylosuccinate lyase 431 CSGID 1-429 -114.000 38  IDP04633 gene: purB; adenylosuccinate lyase [Francisella tularensis subsp. tularensis SCHU S4] FTT0015 [Francisella tularensis subsp. tularensis SCHU S4]
16 [J] COG0016 Phenylalanyl-tRNA synthetase alpha subunit 344 CSGID 1-343 -131.000 70  IDP04618 phenylalanyl-tRNA synthetase subunit alpha [Bacillus anthracis str. Sterne] BAS4456 [Bacillus anthracis str. Sterne]
17 [J] COG0017 Aspartyl/asparaginyl-tRNA synthetases 430 CSGID 1-430 -147.000 99  IDP05209 gene: asnC; asparaginyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL] SACOL1494 [Staphylococcus aureus subsp. aureus COL]
18 [J] COG0018 Arginyl-tRNA synthetase 556 CSGID 1-556 -169.000 61  IDP05453 arginyl-tRNA synthetase [Bacillus anthracis str. Sterne] BAS5213 [Bacillus anthracis str. Sterne]
19 [E] COG0019 Diaminopimelate decarboxylase 436 CSGID 7-434 -100.000 33  IDP90886 diaminopimelate decarboxylase [Vibrio cholerae O1 biovar eltor str. N16961] VC0125 [Vibrio cholerae O1 biovar El Tor str. N16961]
20 [I] COG0020 Undecaprenyl pyrophosphate synthase 248 CSGID 2-245 -111.000 48  IDP04452 RecName: Full=Undecaprenyl pyrophosphate synthetase; Short=UPP synthetase; AltName: Full=Di-trans,poly-cis-decaprenylcistransferase; AltName: Full=Undecaprenyl diphosphate synthase; Short=UDS YPO1049 [Yersinia pestis CO92]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.