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Results: 1-20 of 8581next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 [H] COG0001 Glutamate-1-semialdehyde aminotransferase 411 PfamA32U 18-408 -54.300 26  PF00202.21; Y2045_BACPE/19-432; Aminotransferase class-III
2 [E] COG0002 Acetylglutamate semialdehyde dehydrogenase 336 PfamA32U 3-120 -41.600 20  PF01118.24; DHAS_YEAST/6-132; Semialdehyde dehydrogenase, NAD binding domain
153-306 -30.500 15  PF02774.18; DHAS_ECOLI/144-353; Semialdehyde dehydrogenase, dimerisation domain
3 [P] COG0003 Oxyanion-translocating ATPase 396 PfamA32U 1-307 -71.700 22  PF02374.15; ASNA_HUMAN/37-340; Anion-transporting ATPase
328-390 -22.100 36  PF17886.1; A9WBH2_CHLAA/329-391; HSP20-like domain found in ArsA
4 [P] COG0004 Ammonia permease 470 PfamA32U 41-460 -111.000 35  PF00909.21; MEP2_YEAST/33-444; Ammonium Transporter Family
5 [F] COG0005 Purine nucleoside phosphorylase 271 PfamA32U 22-268 -80.400 19  PF01048.20; Q4DQ97_TRYCC/13-261; Phosphorylase superfamily
6 [E] COG0006 Xaa-Pro aminopeptidase 356 PfamA32U 5-127 -22.200 12  PF01321.18; Y4TL_SINFN/18-162; Creatinase/Prolidase N-terminal domain
134-338 -84.700 38  PF00557.24; YOD1_SCHPO/228-435; Metallopeptidase family M24
7 [H] COG0007 Uroporphyrinogen-III methylase 292 PfamA32U 26-238 -65.300 23  PF00590.20; Q3A6A0_PELCD/39-272; Tetrapyrrole (Corrin/Porphyrin) Methylases
8 [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases 554 PfamA32U 27-338 -123.000 100  PF00749.21; SYQ_ECOLI/27-338; tRNA synthetases class I (E and Q), catalytic domain
340-528 -45.700 49  PF03950.18; Q6AJL3_DESPS/350-543; tRNA synthetases class I (E and Q), anti-codon binding domain
9 [J] COG0009 Putative translation factor (SUA5) 346 PfamA32U 26-203 -82.000 36  PF01300.18; Q6AL59_DESPS/27-203; Telomere recombination
205-341 -40.100 40  PF03481.13; R5ALB5_9CLOT/198-340; Putative GTP-binding controlling metal-binding
10 [E] COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family 306 PfamA32U 34-299 -93.800 39  PF00491.21; Q164F5_ROSDO/34-308; Arginase family
11 [S] COG0011 Uncharacterized conserved protein 94 PfamA32U 6-94 -36.200 23  PF01910.17; A5D404_PELTS/4-96; Thiamine-binding protein
12 [J] COG0012 Predicted GTPase, probable translation factor 397 PfamA32U 1-263 -19.800 25  PF02421.18; B3EBA7_GEOLS/7-162; Ferrous iron transport protein B
220-327 -24.500 37  PF08438.10; U1I0Z5_ENDPU/226-345; GTPase of unknown function C-terminal
319-395 -32.800 26  PF06071.13; E6TZX7_BACCJ/282-365; Protein of unknown function (DUF933 topsan)
13 [J] COG0013 Alanyl-tRNA synthetase 872 PfamA32U 8-558 -143.000 42  PF01411.19; SYA_HAEIN/6-555; tRNA synthetases class II (A)
14 [E] COG0014 Gamma-glutamyl phosphate reductase 417 PfamA32U 2-408 -65.100 15  PF00171.22; BETB_ECOLI/15-479; Aldehyde dehydrogenase family
15 [F] COG0015 Adenylosuccinate lyase 431 PfamA32U 2-286 -52.500 21  PF00206.20; FUMC2_BRADU/22-352; Lyase
297-419 -21.500 14  PF08328.11; A4SZU3_POLAQ/333-447; Adenylosuccinate lyase C-terminal
350-429 -31.100 40  PF10397.9; C7JHA0_ACEP3/358-441; Adenylosuccinate lyase C-terminus
16 [J] COG0016 Phenylalanyl-tRNA synthetase alpha subunit 344 PfamA32U 20-88 -18.800 40  PF02912.18; SYFA_IDILO/18-86; Aminoacyl tRNA synthetase class II, N-terminal domain
92-341 -113.000 100  PF01409.20; SYFA_BACHD/92-341; tRNA synthetases class II core domain (F)
17 [J] COG0017 Aspartyl/asparaginyl-tRNA synthetases 430 PfamA32U 3-93 -10.400 18  PF04076.13; YGIW_ECOLI/25-127; Bacterial OB fold (BOF) protein
109-425 -65.600 21  PF00152.20; SYDND_NEIMB/118-567; tRNA synthetases class II (D, K and N)
18 [J] COG0018 Arginyl-tRNA synthetase 556 PfamA32U 9-95 -36.400 33  PF03485.16; SYRC_DROME/81-171; Arginyl tRNA synthetase N terminal domain
108-422 -62.200 20  PF00750.19; SYR_HAEIN/95-446; tRNA synthetases class I (R)
437-556 -52.500 38  PF05746.15; SYR_PYRFU/507-629; DALR anticodon binding domain
19 [E] COG0019 Diaminopimelate decarboxylase 436 PfamA32U 35-391 -86.900 30  PF00278.22; Q088K9_SHEFN/29-368; Pyridoxal-dependent decarboxylase, C-terminal sheet domain
20 [I] COG0020 Undecaprenyl pyrophosphate synthase 248 PfamA32U 21-235 -105.000 48  PF01255.19; K9V8M2_9CYAN/27-247; Putative undecaprenyl diphosphate synthase


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.