current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 8581next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 [H] COG0001 Glutamate-1-semialdehyde aminotransferase 411 SCOP207 1-411 -105.000 74  d5hdma_ c.67.1.4 (A:) automated matches {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
2 [E] COG0002 Acetylglutamate semialdehyde dehydrogenase 336 SCOP207 1-180 -57.200 36  d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}
144-304 -65.800 35  d2cvoa2 d.81.1.1 (A:219-383) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}
3 [P] COG0003 Oxyanion-translocating ATPase 396 SCOP207 2-305 -65.200 26  d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}
326-396 -10.000 28  d4elda_ b.15.1.1 (A:) Small heat shock protein {Methanococcus jannaschii [TaxId: 2190]}
4 [P] COG0004 Ammonia permease 470 SCOP207 35-461 -113.000 43  d2b2ha_ f.44.1.0 (A:) automated matches {Archaeoglobus fulgidus [TaxId: 2234]}
5 [F] COG0005 Purine nucleoside phosphorylase 271 SCOP207 7-271 -106.000 41  d4uc0a_ c.56.2.0 (A:) automated matches {Agrobacterium vitis [TaxId: 373]}
6 [E] COG0006 Xaa-Pro aminopeptidase 356 SCOP207 2-125 -23.700 16  d1chma1 c.55.2.1 (A:2-156) Creatinase {Pseudomonas putida [TaxId: 303]}
128-349 -94.100 36  d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain {Pyrococcus furiosus [TaxId: 2261]}
7 [H] COG0007 Uroporphyrinogen-III methylase 292 SCOP207 25-269 -95.800 44  d1pjqa2 c.90.1.1 (A:216-457) Siroheme synthase CysG, domains 4 and 5 {Salmonella typhimurium [TaxId: 90371]}
8 [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases 554 SCOP207 8-339 -123.000 65  d5bnza1 c.26.1.0 (A:8-340) automated matches {Pseudomonas aeruginosa, PA01 [TaxId: 208964]}
340-551 -50.600 51  d5bnza2 b.53.1.0 (A:341-555) automated matches {Pseudomonas aeruginosa, PA01 [TaxId: 208964]}
9 [J] COG0009 Putative translation factor (SUA5) 346 SCOP207 6-218 -77.300 26  d1jcua_ d.115.1.1 (A:) Hypothetical protein MTH1692 {Methanobacterium thermoautotrophicum [TaxId: 145262]}
10 [E] COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family 306 SCOP207 11-305 -101.000 37  d1gq6a_ c.42.1.1 (A:) Proclavaminate amidino hydrolase {Streptomyces clavuligerus [TaxId: 1901]}
11 [S] COG0011 Uncharacterized conserved protein 94 SCOP207 2-94 -48.300 100  d1vk8a_ d.58.48.1 (A:) Hypothetical protein TM0486 {Thermotoga maritima [TaxId: 2336]}
12 [J] COG0012 Predicted GTPase, probable translation factor 397 SCOP207 1-319 -93.800 87  d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}
320-395 -32.200 90  d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}
13 [J] COG0013 Alanyl-tRNA synthetase 872 SCOP207 3-248 -101.000 48  d1yfsa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
249-462 -64.400 39  d1yfsa1 a.203.1.1 (A:237-453) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
487-554 -18.200 35  d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
555-701 -55.200 29  d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
14 [E] COG0014 Gamma-glutamyl phosphate reductase 417 SCOP207 2-416 -120.000 46  d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Thermotoga maritima [TaxId: 2336]}
15 [F] COG0015 Adenylosuccinate lyase 431 SCOP207 2-429 -122.000 48  d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]}
16 [J] COG0016 Phenylalanyl-tRNA synthetase alpha subunit 344 SCOP207 6-91 -23.900 33  d3pcoc1 a.2.7.0 (C:5-90) automated matches {Escherichia coli [TaxId: 562]}
92-344 -106.000 40  d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]}
17 [J] COG0017 Aspartyl/asparaginyl-tRNA synthetases 430 SCOP207 1-103 -37.900 34  d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]}
102-430 -110.000 49  d1x54a2 d.104.1.0 (A:105-434) automated matches {Pyrococcus horikoshii [TaxId: 53953]}
18 [J] COG0018 Arginyl-tRNA synthetase 556 SCOP207 11-109 -30.900 22  d1iq0a3 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS), N-terminal `additional` domain {Thermus thermophilus [TaxId: 274]}
117-429 -71.400 21  d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}
432-556 -53.200 33  d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
19 [E] COG0019 Diaminopimelate decarboxylase 436 SCOP207 39-302 -75.000 39  d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]}
258-435 -68.100 34  d1hkva1 b.49.2.3 (A:2-45,A:311-447) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]}
20 [I] COG0020 Undecaprenyl pyrophosphate synthase 248 SCOP207 9-237 -110.000 44  d4h8ea_ c.101.1.1 (A:) automated matches {Staphylococcus aureus [TaxId: 158879]}


FFAS is supported by the NIH grant R01-GM087218-01
1 2 7 4 0 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.