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Results: 1-20 of 7384next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 IDP00001 aldehyde-alcohol dehydrogenase BA_4599 [Bacillus anthracis str. Ames] 867 PDB0516 12-458 -133.000 46  3my7_A mol:protein length:452 Alcohol dehydrogenase/acetaldehyde dehydrogen
440-866 -134.000 73  3zdr_A mol:protein length:433 ALCOHOL DEHYDROGENASE DOMAIN OF THE BIFUNCTIO
2 IDP00002 surface layer protein, (pxo1-54) GBAA_pXO1_0079 [Bacillus anthracis str. 'Ames Ancestor'] 404 PDB0516 45-226 -57.900 30  3pyw_A mol:protein length:203 S-layer protein sap
46-275 -49.300 25  4aq1_A mol:protein length:892 SBSB PROTEIN
3 IDP00003 gene: gerXC; spore germination protein xc, (pxo1-112) GBAA_pXO1_0158 [Bacillus anthracis str. 'Ames Ancestor'] 317 PDB0516 26-317 -62.000 17  3n54_B mol:protein length:350 Spore germination protein B3
4 IDP00004 Chromosomal replication initiator protein dnaA BA_0001 [Bacillus anthracis str. Ames] 446 PDB0516 7-446 -132.000 37  2z4r_A mol:protein length:440 Chromosomal replication initiator protein dna
5 IDP00005 internalin, putative BA_0552 [Bacillus anthracis str. Ames] 1070 PDB0516 8-781 -78.800 13  4z0c_A mol:protein length:709 Toll-like receptor 13
90-885 -82.400 15  3w3g_A mol:protein length:811 Toll-like receptor 8
282-1041 -46.800 12  4l3a_A mol:protein length:590 Internalin K
6 IDP00006 immune inhibitor A metalloprotease BA_0672 [Bacillus anthracis str. Ames] 799 PDB0516 50-799 -186.000 99  4yu5_A mol:protein length:756 Immune inhibitor A, metalloprotease
7 IDP00007 gene: racE-1; glutamate racemase BA_0847 [Bacillus anthracis str. Ames] 276 PDB0516 1-276 -110.000 100  2dwu_A mol:protein length:276 Glutamate racemase
8 IDP00008 gene: cysG; uroporphyrin-III C-methyltransferase BA_1445 [Bacillus anthracis str. Ames] 258 PDB0516 2-257 -110.000 38  1s4d_A mol:protein length:280 Uroporphyrin-III C-methyltransferase
9 IDP00009 3-dehydroquinate synthase BA_1538 [Bacillus anthracis str. Ames] 363 PDB0516 3-358 -114.000 37  1xag_A mol:protein length:354 3-dehydroquinate synthase
10 IDP00010 uroporphyrin-III C-methyltransferase, putative BA_2144 [Bacillus anthracis str. Ames] 474 PDB0516 2-259 -92.700 37  1s4d_A mol:protein length:280 Uroporphyrin-III C-methyltransferase
226-469 -38.100 3d8n_A mol:protein length:286 Uroporphyrinogen-III synthase
11 IDP00011 alcohol dehydrogenase, iron-containing BA_2222 [Bacillus anthracis str. Ames] 392 PDB0516 1-379 -99.600 39  3owo_A mol:protein length:383 Alcohol dehydrogenase 2
12 IDP00012 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) BA_2953 [Bacillus anthracis str. Ames] 429 PDB0516 1-427 -136.000 66  3rmt_A mol:protein length:455 3-phosphoshikimate 1-carboxyvinyltransferase
13 IDP00013 LPXTG-motif cell wall anchor domain protein BA_3254 [Bacillus anthracis str. Ames] 372 PDB0516 2-260 -19.200 10  4ux3_A mol:protein length:543 STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN
52-330 -27.500 2tma_A mol:protein length:284 TROPOMYOSIN
77-372 -23.000 12  4lin_A mol:protein length:300 Tail needle protein gp26
14 IDP00014 Protein recA (Recombinase A) BA_3915 [Bacillus anthracis str. Ames] 343 PDB0516 2-343 -144.000 65  1ubc_A mol:protein length:349 RecA
15 IDP00015 UDP-N-acetylenolpyruvoylglucosamine reductase 1 (UDP-N-acetylmuramate dehydrogenase 1) BA_4048 [Bacillus anthracis str. Ames] 301 PDB0516 1-301 -122.000 64  4pyt_A mol:protein length:309 UDP-N-acetylenolpyruvoylglucosamine reductase
16 IDP00016 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase) (Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptide synthetase) BA_4053 [Bacillus anthracis str. Ames] 491 PDB0516 1-491 -132.000 39  4c12_A mol:protein length:501 UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--L-
17 IDP00017 gene: ribBA; Riboflavin biosynthesis protein ribBA [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase); GTP cyclohydrolase-2 (GTP cyclohydrolase II)] BA_4333 [Bacillus anthracis str. Ames] 397 PDB0516 2-396 -117.000 57  4i14_A mol:protein length:425 Riboflavin biosynthesis protein RibBA
18 IDP00018 gene: racE-2; glutamate racemase BA_4717 [Bacillus anthracis str. Ames] 269 PDB0516 2-268 -108.000 100  2gzm_A mol:protein length:267 Glutamate racemase
19 IDP00019 gene: pykA-2; pyruvate kinase BA_4843 [Bacillus anthracis str. Ames] 585 PDB0516 1-585 -165.000 69  2e28_A mol:protein length:587 Pyruvate kinase
20 IDP00020 UDP-N-acetylenolpyruvoylglucosamine reductase 2 (UDP-N-acetylmuramate dehydrogenase 2) BA_5315 [Bacillus anthracis str. Ames] 305 PDB0516 1-305 -117.000 59  1hsk_A mol:protein length:326 UDP-N-ACETYLENOLPYRUVOYLGLUCOSAMINE REDUCTASE

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor KS, Godzik A. The domains of apoptosis: a genomics perspective. Sci STKE. 2004 Jun 22;2004(239):re9. Review.