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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 7384next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 IDP00001 aldehyde-alcohol dehydrogenase BA_4599 [Bacillus anthracis str. Ames] 867 PfamA32U 12-438 -35.500 16  PF00171.22; BETB_ECOLI/15-479; Aldehyde dehydrogenase family
467-856 -95.400 28  PF00465.19; Q2SC87_HAHCH/11-388; Iron-containing alcohol dehydrogenase
2 IDP00002 surface layer protein, (pxo1-54) GBAA_pXO1_0079 [Bacillus anthracis str. 'Ames Ancestor'] 404 PfamA32U 47-90 -21.000 25  PF00395.20; U5LGG8_9BACI/157-200; S-layer homology domain
47-226 -10.500 10  PF09168.10; Q5FJC6_LACAC/1-156; X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal
3 IDP00003 gene: gerXC; spore germination protein xc, (pxo1-112) GBAA_pXO1_0158 [Bacillus anthracis str. 'Ames Ancestor'] 317 PfamA32U 218-317 -30.800 14  PF05504.11; C6D3H9_PAESJ/220-385; Spore germination B3/ GerAC like, C-terminal
4 IDP00004 Chromosomal replication initiator protein dnaA BA_0001 [Bacillus anthracis str. Ames] 446 PfamA32U 5-68 -17.600 20  PF11638.8; DNAA_LAWIP/5-67; DnaA N-terminal domain
111-329 -101.000 72  PF00308.18; DNAA_STRCO/317-535; Bacterial dnaA protein
147-431 -10.100 15  PF03969.16; ZAPE_ECOLI/4-371; AFG1-like ATPase
356-424 -34.700 68  PF08299.11; D9QS97_ACEAZ/358-426; Bacterial dnaA protein helix-turn-helix
5 IDP00005 internalin, putative BA_0552 [Bacillus anthracis str. Ames] 1070 PfamA32U 577-712 -26.600 22  PF14580.6; H3BFR2_LATCH/1-175; Leucine-rich repeat
706-748 -11.400 34  PF12799.7; A4HHM1_LEIBR/66-108; Leucine Rich repeats (2 copies)
6 IDP00006 immune inhibitor A metalloprotease BA_0672 [Bacillus anthracis str. Ames] 799 PfamA32U 152-795 -105.000 27  PF05547.11; Q9S2G1_STRCO/100-774; Immune inhibitor A peptidase M6
7 IDP00007 gene: racE-1; glutamate racemase BA_0847 [Bacillus anthracis str. Ames] 276 PfamA32U 10-219 -85.600 37  PF01177.22; R7EMK1_9BACE/12-229; Asp/Glu/Hydantoin racemase
8 IDP00008 gene: cysG; uroporphyrin-III C-methyltransferase BA_1445 [Bacillus anthracis str. Ames] 258 PfamA32U 3-214 -63.000 25  PF00590.20; Q3A6A0_PELCD/39-272; Tetrapyrrole (Corrin/Porphyrin) Methylases
9 IDP00009 3-dehydroquinate synthase BA_1538 [Bacillus anthracis str. Ames] 363 PfamA32U 16-269 -39.400 14  PF13685.6; Q162K0_ROSDO/40-301; Iron-containing alcohol dehydrogenase
68-324 -92.300 42  PF01761.20; AROB_SYNY3/68-330; 3-dehydroquinate synthase
10 IDP00010 uroporphyrin-III C-methyltransferase, putative BA_2144 [Bacillus anthracis str. Ames] 474 PfamA32U 4-214 -53.600 24  PF00590.20; Q3A6A0_PELCD/39-272; Tetrapyrrole (Corrin/Porphyrin) Methylases
264-473 -30.600 13  PF02602.15; Q6AMG2_DESPS/275-509; Uroporphyrinogen-III synthase HemD
11 IDP00011 alcohol dehydrogenase, iron-containing BA_2222 [Bacillus anthracis str. Ames] 392 PfamA32U 2-371 -99.500 33  PF00465.19; Q2SC87_HAHCH/11-388; Iron-containing alcohol dehydrogenase
12 IDP00012 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) BA_2953 [Bacillus anthracis str. Ames] 429 PfamA32U 11-424 -69.100 21  PF00275.20; MURA_ECOLI/6-406; EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
13 IDP00013 LPXTG-motif cell wall anchor domain protein BA_3254 [Bacillus anthracis str. Ames] 372 PfamA32U 1-372 -15.700 12  PF15358.6; G1M5D4_AILME/26-577; Testis-specific serine kinase substrate
52-331 -23.800 PF10174.9; H2T771_TAKRU/113-856; RIM-binding protein of the cytomatrix active zone
14 IDP00014 Protein recA (Recombinase A) BA_3915 [Bacillus anthracis str. Ames] 343 PfamA32U 6-267 -83.200 67  PF00154.21; RECA_ACIAD/7-268; recA bacterial DNA recombination protein
53-307 -16.600 PF07088.11; GVPD1_HALSA/23-536; GvpD gas vesicle protein
15 IDP00015 UDP-N-acetylenolpyruvoylglucosamine reductase 1 (UDP-N-acetylmuramate dehydrogenase 1) BA_4048 [Bacillus anthracis str. Ames] 301 PfamA32U 35-164 -14.100 14  PF01565.23; Q82SS0_NITEU/46-186; FAD binding domain
201-299 -60.700 50  PF02873.16; Q24TE7_DESHY/186-285; UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
16 IDP00016 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase) (Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptide synthetase) BA_4053 [Bacillus anthracis str. Ames] 491 PfamA32U 1-259 -23.600 PF16292.5; A9WF69_CHLAA/4-305; Domain of unknown function (DUF4938 topsan)
106-312 -76.100 37  PF08245.12; MURE_THEMA/108-304; Mur ligase middle domain
332-418 -51.700 46  PF02875.21; MURE_HELPY/294-375; Mur ligase family, glutamate ligase domain
17 IDP00017 gene: ribBA; Riboflavin biosynthesis protein ribBA [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase); GTP cyclohydrolase-2 (GTP cyclohydrolase II)] BA_4333 [Bacillus anthracis str. Ames] 397 PfamA32U 6-196 -61.500 53  PF00926.19; R7D2C4_9BACE/10-201; 3,4-dihydroxy-2-butanone 4-phosphate synthase
205-371 -72.200 57  PF00925.20; G4T1J0_META2/10-176; GTP cyclohydrolase II
18 IDP00018 gene: racE-2; glutamate racemase BA_4717 [Bacillus anthracis str. Ames] 269 PfamA32U 7-216 -86.200 39  PF01177.22; R7EMK1_9BACE/12-229; Asp/Glu/Hydantoin racemase
19 IDP00019 gene: pykA-2; pyruvate kinase BA_4843 [Bacillus anthracis str. Ames] 585 PfamA32U 1-343 -101.000 49  PF00224.21; KPYK_EMENI/32-379; Pyruvate kinase, barrel domain
356-469 -41.400 28  PF02887.16; D5C1C2_NITHN/363-477; Pyruvate kinase, alpha/beta domain
506-575 -18.500 40  PF00391.23; I4BU05_ACEMN/423-506; PEP-utilising enzyme, mobile domain
20 IDP00020 UDP-N-acetylenolpyruvoylglucosamine reductase 2 (UDP-N-acetylmuramate dehydrogenase 2) BA_5315 [Bacillus anthracis str. Ames] 305 PfamA32U 38-166 -15.200 20  PF01565.23; Q82SS0_NITEU/46-186; FAD binding domain
202-300 -61.200 52  PF02873.16; Q24TE7_DESHY/186-285; UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.