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Results: 1-20 of 7384next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 IDP00001 aldehyde-alcohol dehydrogenase BA_4599 [Bacillus anthracis str. Ames] 867 SCOP207 16-427 -43.400 18  d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Thermotoga maritima [TaxId: 2336]}
453-864 -93.400 32  d5br4a1 e.22.1.2 (A:1-383) automated matches {Escherichia coli [TaxId: 562]}
2 IDP00002 surface layer protein, (pxo1-54) GBAA_pXO1_0079 [Bacillus anthracis str. 'Ames Ancestor'] 404 SCOP207 84-226 -14.600 d1lnsa1 a.40.2.1 (A:1-145) X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain {Lactococcus lactis [TaxId: 1358]}
3 IDP00003 gene: gerXC; spore germination protein xc, (pxo1-112) GBAA_pXO1_0158 [Bacillus anthracis str. 'Ames Ancestor'] 317 SCOP207 23-112 -5.730 11  d3ejva1 d.17.4.28 (A:2-160) Uncharacterized protein Saro2766 {Novosphingobium aromaticivorans [TaxId: 48935]}
4 IDP00004 Chromosomal replication initiator protein dnaA BA_0001 [Bacillus anthracis str. Ames] 446 SCOP207 109-324 -92.500 42  d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
341-446 -43.000 30  d1l8qa1 a.4.12.2 (A:290-399) Chromosomal replication initiation factor DnaA C-terminal domain IV {Aquifex aeolicus [TaxId: 63363]}
5 IDP00005 internalin, putative BA_0552 [Bacillus anthracis str. Ames] 1070 SCOP207 202-647 -32.800 15  d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}
275-761 -53.100 28  d1o6va2 c.10.2.1 (A:36-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}
535-791 -35.100 17  d2o6qa_ c.10.2.0 (A:) automated matches {Inshore hagfish (Eptatretus burgeri) [TaxId: 7764]}
6 IDP00006 immune inhibitor A metalloprotease BA_0672 [Bacillus anthracis str. Ames] 799 SCOP207 241-419 -12.300 15  d5d7wa1 d.92.1.0 (A:4-246) automated matches {Serratia marcescens [TaxId: 615]}
311-412 -12.900 23  d1c7ka_ d.92.1.1 (A:) Zinc protease {Streptomyces caespitosus [TaxId: 53502]}
7 IDP00007 gene: racE-1; glutamate racemase BA_0847 [Bacillus anthracis str. Ames] 276 SCOP207 9-112 -62.400 44  d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}
113-267 -51.500 34  d1b74a2 c.78.2.1 (A:106-252) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}
8 IDP00008 gene: cysG; uroporphyrin-III C-methyltransferase BA_1445 [Bacillus anthracis str. Ames] 258 SCOP207 2-247 -98.500 46  d1pjqa2 c.90.1.1 (A:216-457) Siroheme synthase CysG, domains 4 and 5 {Salmonella typhimurium [TaxId: 90371]}
9 IDP00009 3-dehydroquinate synthase BA_1538 [Bacillus anthracis str. Ames] 363 SCOP207 1-362 -94.900 30  d1ujna_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Thermus thermophilus [TaxId: 274]}
10 IDP00010 uroporphyrin-III C-methyltransferase, putative BA_2144 [Bacillus anthracis str. Ames] 474 SCOP207 3-247 -83.000 46  d1pjqa2 c.90.1.1 (A:216-457) Siroheme synthase CysG, domains 4 and 5 {Salmonella typhimurium [TaxId: 90371]}
253-468 -28.400 11  d1wcwa1 c.113.1.1 (A:10-261) automated matches {Thermus thermophilus [TaxId: 274]}
11 IDP00011 alcohol dehydrogenase, iron-containing BA_2222 [Bacillus anthracis str. Ames] 392 SCOP207 1-379 -95.100 32  d5br4a1 e.22.1.2 (A:1-383) automated matches {Escherichia coli [TaxId: 562]}
12 IDP00012 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) BA_2953 [Bacillus anthracis str. Ames] 429 SCOP207 2-427 -108.000 41  d2pqca_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Agrobacterium sp. [TaxId: 268951]}
13 IDP00013 LPXTG-motif cell wall anchor domain protein BA_3254 [Bacillus anthracis str. Ames] 372 SCOP207 139-302 -7.770 11  d1i4ta_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}
14 IDP00014 Protein recA (Recombinase A) BA_3915 [Bacillus anthracis str. Ames] 343 SCOP207 4-266 -83.300 68  d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}
267-325 -18.400 37  d1u94a2 d.48.1.1 (A:269-328) RecA protein, C-terminal domain {Escherichia coli [TaxId: 562]}
15 IDP00015 UDP-N-acetylenolpyruvoylglucosamine reductase 1 (UDP-N-acetylmuramate dehydrogenase 1) BA_4048 [Bacillus anthracis str. Ames] 301 SCOP207 2-195 -61.800 39  d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
196-301 -63.600 38  d1hska2 d.146.1.1 (A:209-317) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
16 IDP00016 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase) (Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptide synthetase) BA_4053 [Bacillus anthracis str. Ames] 491 SCOP207 2-96 -33.100 31  d1e8ca1 c.98.1.1 (A:3-103) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}
97-331 -75.800 31  d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}
332-487 -67.500 42  d1e8ca2 c.59.1.1 (A:338-494) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}
17 IDP00017 gene: ribBA; Riboflavin biosynthesis protein ribBA [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase); GTP cyclohydrolase-2 (GTP cyclohydrolase II)] BA_4333 [Bacillus anthracis str. Ames] 397 SCOP207 3-196 -60.900 32  d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Methanocaldococcus jannaschii [TaxId: 2190]}
204-375 -73.400 55  d2bz1a_ c.144.1.1 (A:) GTP cyclohydrolase II, RibA {Escherichia coli [TaxId: 562]}
18 IDP00018 gene: racE-2; glutamate racemase BA_4717 [Bacillus anthracis str. Ames] 269 SCOP207 6-109 -62.700 47  d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}
110-266 -49.900 33  d1b74a2 c.78.2.1 (A:106-252) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}
19 IDP00019 gene: pykA-2; pyruvate kinase BA_4843 [Bacillus anthracis str. Ames] 585 SCOP207 1-337 -79.900 57  d3hqna1 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Trypanosome (Leishmania mexicana) [TaxId: 5665]}
354-472 -38.500 34  d1e0ta3 c.49.1.1 (A:354-470) Pyruvate kinase, C-terminal domain {Escherichia coli [TaxId: 562]}
473-581 -24.000 30  d1kbla2 c.8.1.1 (A:377-509) Pyruvate phosphate dikinase, central domain {Clostridium symbiosum [TaxId: 1512]}
20 IDP00020 UDP-N-acetylenolpyruvoylglucosamine reductase 2 (UDP-N-acetylmuramate dehydrogenase 2) BA_5315 [Bacillus anthracis str. Ames] 305 SCOP207 4-196 -66.800 50  d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
197-305 -64.700 78  d1hska2 d.146.1.1 (A:209-317) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain {Staphylococcus aureus [TaxId: 1280]}


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.