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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16127995|ref|NP_414542.1| thr operon leader peptide (thrL b0001 exp) [Escherichia coli str. K-12 substr. MG1655] 21 COG1018 1-21 -3.340 28  [N] COG5567 Predicted small periplasmic lipoprotein
CSGID 1-19 -6.220 21  IDP92694 TpgX protein [Staphylococcus aureus subsp. aureus ST398] YP_005735174 [Staphylococcus aureus subsp. aureus ST398]
H.sapiens 5-17 -3.910 30  sp|Q6ZU35|K1211_HUMAN Uncharacterized protein KIAA1211 OS=Homo sapiens GN=KIAA1211 PE=1 SV=3 (Range: 301-600)
HGM_OVER 1-20 -2.320 15  PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)
NEW_HUMAN_DOMAINS 1-21 -3.040 19  sp|Q86SK9|SCD5_HUMAN Stearoyl-CoA desaturase 5 OS=Homo sapiens GN=SCD5 PE=2 SV=2 (Range: 280-330)
PDB1018 3-16 -3.760 50  1vry_A mol:protein length:76 Glycine receptor alpha-1 chain
PfamA32U 1-11 -2.700 36  PF10471.9; C1HA50_PARBA/1-73; Anaphase-promoting complex APC subunit CDC26
SCOP207 1-21 -1.790 42  d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]}
VFDB 1-21 -3.340 28  [N] COG5567 Predicted small periplasmic lipoprotein
2 gi|16127996|ref|NP_414543.1| fused aspartokinase I and homoserine dehydrogenase I (thrA b0002 exp) [Escherichia coli str. K-12 substr. MG1655] 820 COG1018 1-481 -112.000 26  [E] COG0527 Aspartokinases
456-820 -84.100 67  [E] COG0460 Homoserine dehydrogenase
CSGID 1-817 -207.000 30  IDP00585 gene: metL; bifunctional aspartate kinase II/homoserine dehydrogenase II YPO0116 [Yersinia pestis CO92]
H.sapiens 2-263 -17.100 14  sp|P54886|P5CS_HUMAN Delta-1-pyrroline-5-carboxylate synthase OS=Homo sapiens GN=ALDH18A1 PE=1 SV=2 (Range: 1-300)
119-298 -11.300 13  sp|P54886|P5CS_HUMAN Delta-1-pyrroline-5-carboxylate synthase OS=Homo sapiens GN=ALDH18A1 PE=1 SV=2 (Range: 151-450)
HGM_OVER 187-444 -2.090 10  PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]
NEW_HUMAN_DOMAINS 226-272 -5.700 15  tr|C9J120|C9J120_HUMAN Uncharacterized protein OS=Homo sapiens GN=ZNF445 PE=4 SV=1 (Range: 127-225)
PDB1018 1-483 -110.000 28  2cdq_A mol:protein length:510 ASPARTOKINASE
462-817 -77.100 32  1q7g_A mol:protein length:359 Homoserine dehydrogenase
PfamA32U 3-284 -12.200 14  PF00696.28; PROJ_BACSU/8-238; Amino acid kinase family
614-811 -39.000 27  PF00742.19; R5EAW4_9BURK/138-316; Homoserine dehydrogenase
SCOP207 2-300 -90.500 35  d3c20a1 c.73.1.3 (A:2-303) automated matches {Methanocaldococcus jannaschii [TaxId: 2190]}
302-404 -24.500 34  d3c20a2 d.58.18.0 (A:304-403) automated matches {Methanocaldococcus jannaschii [TaxId: 2190]}
396-462 -24.900 43  d3c20a3 d.58.18.0 (A:404-470) automated matches {Methanocaldococcus jannaschii [TaxId: 2190]}
462-635 -34.800 26  d1ebua1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
614-798 -63.300 35  d1ebua2 d.81.1.2 (A:151-340) Homoserine dehydrogenase {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 1-481 -112.000 26  [E] COG0527 Aspartokinases
456-820 -84.100 67  [E] COG0460 Homoserine dehydrogenase
3 gi|16127997|ref|NP_414544.1| homoserine kinase (thrB b0003 exp) [Escherichia coli str. K-12 substr. MG1655] 310 COG1018 2-310 -97.800 71  [E] COG0083 Homoserine kinase
CSGID 2-308 -87.400 23  IDP90702 gene: thrB; homoserine kinase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0134 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
H.sapiens 3-286 -26.600 12  sp|Q8N0W3|FUK_HUMAN L-fucose kinase OS=Homo sapiens GN=FUK PE=2 SV=2 (Range: 751-1050)
HGM_OVER 89-245 -3.960 PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;
NEW_HUMAN_DOMAINS 180-263 -5.700 13  tr|E9PFE0|E9PFE0_HUMAN Uncharacterized protein OS=Homo sapiens GN=CIITA PE=4 SV=1 (Range: 286-365)
PDB1018 1-309 -101.000 76  4rpf_A mol:protein length:310 Homoserine kinase
PfamA32U 83-150 -20.600 25  PF00288.26; ISPE_BACSU/86-144; GHMP kinases N terminal domain
210-286 -10.400 15  PF08544.13; Q64T43_BACFR/846-929; GHMP kinases C terminal
SCOP207 2-167 -64.900 30  d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Methanococcus jannaschii [TaxId: 2190]}
170-308 -49.500 28  d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Methanococcus jannaschii [TaxId: 2190]}
VFDB 2-310 -97.800 71  [E] COG0083 Homoserine kinase
4 gi|16127998|ref|NP_414545.1| threonine synthase (thrC b0004 exp) [Escherichia coli str. K-12 substr. MG1655] 428 COG1018 1-427 -103.000 28  [E] COG0498 Threonine synthase
CSGID 1-428 -118.000 93  IDP00901 gene: thrC; threonine synthase STM0004 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
H.sapiens 1-427 -101.000 27  sp|Q86YJ6|THNS2_HUMAN Threonine synthase-like 2 OS=Homo sapiens GN=THNSL2 PE=2 SV=3
HGM_OVER 105-245 -2.870 13  HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636;
NEW_HUMAN_DOMAINS 130-158 -3.800 20  tr|F8WDD8|F8WDD8_HUMAN Uncharacterized protein OS=Homo sapiens GN=C3orf65 PE=4 SV=1 (Range: 1-114)
PDB1018 1-428 -122.000 100  1vb3_A mol:protein length:428 Threonine synthase
PfamA32U 2-80 -30.400 32  PF14821.6; Q21LF7_SACD2/2-80; Threonine synthase N terminus
92-375 -21.200 13  PF00291.25; A0Z504_9GAMM/17-322; Pyridoxal-phosphate dependent enzyme
SCOP207 1-428 -122.000 100  d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]}
VFDB 1-427 -103.000 28  [E] COG0498 Threonine synthase
5 gi|16127999|ref|NP_414546.1|(removed signal:1-23) predicted protein (yaaX b0005 exp) [Escherichia coli str. K-12 substr. MG1655] 75 COG1018 6-35 -7.900 20  [O] KOG1872 Ubiquitin-specific protease
CSGID 1-75 -23.700 46  IDP01747 gene: ypeC; putative periplasmic protein [Salmonella typhimurium LT2] STM2407 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
H.sapiens 5-24 -8.080 55  sp|Q96T23|RSF1_HUMAN Remodeling and spacing factor 1 OS=Homo sapiens GN=RSF1 PE=1 SV=2 (Range: 151-450)
HGM_OVER 1-34 -7.540 23  HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;
NEW_HUMAN_DOMAINS 17-32 -8.100 37  sp|Q14517|FAT1_HUMAN Protocadherin Fat 1 OS=Homo sapiens GN=FAT1 PE=1 SV=2 (Range: 4376-4456)
PDB1018 3-34 -8.680 23  4phz_B mol:protein length:252 Particulate methane monooxygenase subunit A
PfamA32U 2-74 -27.500 31  PF10697.9; Q0WCT3_YERPE/39-126; Protein of unknown function (DUF2502 topsan)
SCOP207 6-35 -7.050 20  d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]}
VFDB 6-35 -7.900 20  [O] KOG1872 Ubiquitin-specific protease
6 gi|16128000|ref|NP_414547.1| conserved protein, UPF0246 family (yaaA b0006 exp) [Escherichia coli str. K-12 substr. MG1655] 258 COG1018 1-258 -111.000 99  [S] COG3022 Uncharacterized protein conserved in bacteria
CSGID 1-258 -109.000 65  IDP91427 hypothetical protein VV1_0535 [Vibrio vulnificus CMCP6] VV1_0535 [Vibrio vulnificus CMCP6]
H.sapiens 4-249 -6.850 10  sp|Q9UKG9|OCTC_HUMAN Peroxisomal carnitine O-octanoyltransferase OS=Homo sapiens GN=CROT PE=1 SV=2 (Range: 1-300)
HGM_OVER 36-250 -3.610 12  PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;
NEW_HUMAN_DOMAINS 33-258 -5.760 13  sp|O15259|NPHP1_HUMAN Nephrocystin-1 OS=Homo sapiens GN=NPHP1 PE=1 SV=1 (Range: 548-732)
PDB1018 1-258 -108.000 100  5caj_A mol:protein length:278 UPF0246 protein YaaA
PfamA32U 1-243 -102.000 60  PF03883.14; D4ZH13_SHEVD/1-244; Peroxide stress protein YaaA
SCOP207 118-230 -6.970 12  d3n0pb2 b.1.2.1 (B:101-206) automated matches {Human (Homo sapiens) [TaxId: 9606]}
VFDB 1-258 -111.000 99  [S] COG3022 Uncharacterized protein conserved in bacteria
7 gi|16128001|ref|NP_414548.1| predicted transporter (yaaJ b0007 exp) [Escherichia coli str. K-12 substr. MG1655] 476 COG1018 1-471 -124.000 41  [E] COG1115 Na+/alanine symporter
CSGID 1-476 -136.000 49  IDP91426 Na+/alanine symporter [Vibrio vulnificus CMCP6] VV1_0536 [Vibrio vulnificus CMCP6]
H.sapiens 57-441 -14.600 12  sp|Q9UHI5|LAT2_HUMAN Large neutral amino acids transporter small subunit 2 OS=Homo sapiens GN=SLC7A8 PE=1 SV=1
HGM_OVER 260-440 -3.540 10  HGC00762 gi|162641591|dbj|BAAX01018014.1|1.0 TMP00997;
NEW_HUMAN_DOMAINS 43-131 -5.620 tr|F8WAF8|F8WAF8_HUMAN Uncharacterized protein OS=Homo sapiens GN=ZNF140 PE=4 SV=1 (Range: 1-77)
PDB1018 32-441 -11.800 15  5oqt_A mol:protein length:471 Amino acid transporter
52-431 -14.400 12  3gi8_C mol:protein length:444 Uncharacterized protein MJ0609
PfamA32U 47-453 -110.000 46  PF01235.17; C5DAE3_GEOSW/49-446; Sodium:alanine symporter family
SCOP207 59-448 -11.000 11  d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
VFDB 1-471 -124.000 41  [E] COG1115 Na+/alanine symporter
8 gi|16128002|ref|NP_414549.1| transaldolase B (talB b0008 exp) [Escherichia coli str. K-12 substr. MG1655] 317 COG1018 1-317 -104.000 89  [G] COG0176 Transaldolase
CSGID 1-317 -98.100 47  IDP02095 gene: talA; transaldolase B [Francisella tularensis subsp. tularensis SCHU S4] FTT1093c [Francisella tularensis subsp. tularensis SCHU S4]
H.sapiens 1-317 -96.800 59  sp|P37837|TALDO_HUMAN Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2
HGM_OVER 1-162 -3.440 11  PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;
NEW_HUMAN_DOMAINS 122-159 -4.820 18  sp|Q9NQT8|KI13B_HUMAN Kinesin-like protein KIF13B OS=Homo sapiens GN=KIF13B PE=1 SV=1 (Range: 1130-1205)
PDB1018 1-317 -103.000 99  3cwn_A mol:protein length:337 Transaldolase B
PfamA32U 14-313 -93.600 58  PF00923.19; Q966C7_CAEEL/13-315; Transaldolase/Fructose-6-phosphate aldolase
SCOP207 2-317 -105.000 99  d3cwna_ c.1.10.1 (A:) automated matches {Escherichia coli [TaxId: 562]}
VFDB 1-317 -104.000 89  [G] COG0176 Transaldolase
9 gi|16128003|ref|NP_414550.1| molybdochelatase incorporating molybdenum into molybdopterin (mog b0009 exp) [Escherichia coli str. K-12 substr. MG1655] 195 COG1018 2-191 -71.800 77  [H] COG0521 Molybdopterin biosynthesis enzymes
CSGID 1-188 -66.200 50  IDP06143 gene: mogA; molybdenum cofactor biosynthesis protein MogA [Helicobacter pylori J99] NP_223453 [Helicobacter pylori J99]
H.sapiens 2-157 -56.600 35  sp|Q9NQX3|GEPH_HUMAN Gephyrin OS=Homo sapiens GN=GPHN PE=1 SV=1 (Range: 1-300)
HGM_OVER 45-135 -3.500 11  HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;
NEW_HUMAN_DOMAINS 5-94 -6.260 11  sp|Q9NX45|SOLH2_HUMAN Spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 2 OS=Homo sapiens GN=SOHLH2 PE=2 SV=2 (Range: 1-196)
PDB1018 1-195 -74.400 99  1di6_A mol:protein length:195 MOLYBDENUM COFACTOR BIOSYNTHETIC ENZYME
PfamA32U 8-153 -26.000 19  PF00994.24; CINAL_DESPS/4-169; Probable molybdopterin binding domain
SCOP207 2-191 -72.500 99  d1di6a_ c.57.1.1 (A:) MogA {Escherichia coli [TaxId: 562]}
VFDB 2-191 -71.800 77  [H] COG0521 Molybdopterin biosynthesis enzymes
10 gi|16128004|ref|NP_414551.1| inner membrane protein, Grp1_Fun34_YaaH family (yaaH b0010 exp) [Escherichia coli str. K-12 substr. MG1655] 188 COG1018 3-184 -92.700 61  [S] COG1584 Predicted membrane protein
CSGID 3-188 -92.600 61  IDP91444 hypothetical protein VV1_0416 [Vibrio vulnificus CMCP6] VV1_0416 [Vibrio vulnificus CMCP6]
H.sapiens 7-118 -9.980 17  sp|Q8N5U1|M4A15_HUMAN Membrane-spanning 4-domains subfamily A member 15 OS=Homo sapiens GN=MS4A15 PE=2 SV=2
47-183 -9.790 11  sp|Q3C1V0|M4A18_HUMAN Membrane-spanning 4-domains subfamily A member 18 OS=Homo sapiens GN=MS4A18 PE=2 SV=2
HGM_OVER 17-74 -5.690 14  PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;
NEW_HUMAN_DOMAINS 47-75 -6.970 17  sp|Q7Z404|TMC4_HUMAN Transmembrane channel-like protein 4 OS=Homo sapiens GN=TMC4 PE=2 SV=3 (Range: 193-247)
PDB1018 1-187 -97.500 92  5ys3_A mol:protein length:192 Succinate-Acetate Permease
PfamA32U 3-187 -87.700 32  PF01184.19; A7TND9_VANPO/71-277; GPR1/FUN34/yaaH family
SCOP207 9-122 -5.640 14  d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
VFDB 3-184 -92.700 61  [S] COG1584 Predicted membrane protein
11 gi|16128005|ref|NP_414552.1| conserved protein, UPF0174 family (yaaW b0011 exp) [Escherichia coli str. K-12 substr. MG1655] 237 COG1018 1-237 -83.400 100  [S] COG4735 Uncharacterized protein conserved in bacteria
CSGID 50-141 -5.620 IDP91862 DNA-binding protein [Streptococcus equi subsp. zooepidemicus] SZO_00390 [Streptococcus equi subsp. zooepidemicus]
H.sapiens 71-136 -7.950 12  sp|P52655|TF2AA_HUMAN Transcription initiation factor IIA subunit 1 OS=Homo sapiens GN=GTF2A1 PE=1 SV=1
HGM_OVER 1-141 -5.080 PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;
NEW_HUMAN_DOMAINS 14-122 -5.360 11  sp|Q9ULG6|CCPG1_HUMAN Cell cycle progression protein 1 OS=Homo sapiens GN=CCPG1 PE=1 SV=3 (Range: 629-736)
PDB1018 71-136 -7.690 12  5iy6_N mol:protein length:376 Transcription initiation factor IIA subunit 1
PfamA32U 5-39 -10.300 28  PF13099.6; E3D0J1_9BACT/3-37; Domain of unknown function (DUF3944 topsan)
SCOP207 2-93 -6.290 10  d2hmza_ a.24.4.1 (A:) Hemerythrin {Sipunculid worm (Themiste dyscritum) [TaxId: 6436]}
VFDB 1-237 -83.400 100  [S] COG4735 Uncharacterized protein conserved in bacteria
12 gi|16128007|ref|NP_414554.1|(removed signal:1-23) conserved protein, UPF0412 family (yaaI b0013 exp) [Escherichia coli str. K-12 substr. MG1655] 111 COG1018 2-111 -6.080 [S] COG4425 Predicted membrane protein
CSGID 32-111 -6.440 13  IDP91909 cell wall surface anchor family protein, partial [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100002785 [Streptococcus pneumoniae str. Canada MDR_19A]
H.sapiens 7-111 -6.670 sp|Q5T4S7|UBR4_HUMAN E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens GN=UBR4 PE=1 SV=1 (Range: 2251-2550)
HGM_OVER 43-109 -5.770 PB029229 gi|150007903|ref|YP_001302646.1| hypothetical protein BDI_1263 [Parabacteroides distasonis ATCC 8503]gi|149936327|gb|ABR43024.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]
NEW_HUMAN_DOMAINS 1-111 -6.540 sp|Q8N5W9|F101B_HUMAN Protein FAM101B OS=Homo sapiens GN=FAM101B PE=1 SV=1 (Range: 80-214)
PDB1018 40-111 -8.090 11  1mt7_A mol:protein length:99 PROTEASE RETROPEPSIN
PfamA32U 1-109 -57.900 79  PF10807.8; A6T4F3_KLEP7/3-132; Protein of unknown function (DUF2541 topsan)
SCOP207 16-107 -6.680 13  d4ympa_ b.1.28.0 (A:) automated matches {Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]}
VFDB 2-111 -6.080 [S] COG4425 Predicted membrane protein
13 gi|16128008|ref|NP_414555.1| chaperone Hsp70, co-chaperone with DnaJ (dnaK b0014 exp) [Escherichia coli str. K-12 substr. MG1655] 638 COG1018 1-638 -163.000 56  [O] COG0443 Molecular chaperone
CSGID 1-638 -173.000 73  IDP02393 gene: dnaK; heat shock protein DnaK [Francisella tularensis subsp. tularensis SCHU S4] FTT1269c [Francisella tularensis subsp. tularensis SCHU S4]
H.sapiens 3-505 -129.000 30  sp|Q0VDF9|HSP7E_HUMAN Heat shock 70 kDa protein 14 OS=Homo sapiens GN=HSPA14 PE=1 SV=1
255-554 -93.200 63  sp|P38646|GRP75_HUMAN Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2 (Range: 301-600)
297-586 -82.700 52  sp|P11021|GRP78_HUMAN(removed signalp:1-18) 78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2 (Range: 301-600)
405-630 -64.000 47  sp|P38646|GRP75_HUMAN Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2 (Range: 451-679)
HGM_OVER 115-495 -7.890 12  PB162065 _Gut.Meta.Jp.0089312_ gi|162832207|dbj|BABA01012502.1||1 (- 0:1326~0 complete)
NEW_HUMAN_DOMAINS 382-502 -8.820 17  sp|O43301|HS12A_HUMAN Heat shock 70 kDa protein 12A OS=Homo sapiens GN=HSPA12A PE=1 SV=2 (Range: 520-675)
PDB1018 1-605 -171.000 99  5nro_A mol:protein length:611 Chaperone protein DnaK
2-635 -157.000 47  5fpn_A mol:protein length:640 HEAT SHOCK-RELATED 70 KDA PROTEIN 2
PfamA32U 4-604 -165.000 62  PF00012.20; HSP7E_DROME/54-653; Hsp70 protein
SCOP207 3-184 -79.400 54  d3i33a1 c.55.1.1 (A:6-189) automated matches {Human (Homo sapiens) [TaxId: 9606]}
182-382 -72.600 45  d3i33a2 c.55.1.1 (A:190-384) automated matches {Human (Homo sapiens) [TaxId: 9606]}
389-506 -58.600 100  d4f01a1 b.130.1.1 (A:389-506) automated matches {Escherichia coli K-12 [TaxId: 83333]}
507-618 -26.400 22  d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
VFDB 1-638 -163.000 56  [O] COG0443 Molecular chaperone
14 gi|16128009|ref|NP_414556.1| chaperone Hsp40, co-chaperone with DnaK (dnaJ b0015 exp) [Escherichia coli str. K-12 substr. MG1655] 376 COG1018 1-372 -121.000 59  [O] COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain
CSGID 1-376 -125.000 87  IDP00478 gene: dnaJ; chaperone protein DnaJ YPO0469 [Yersinia pestis CO92]
H.sapiens 1-373 -106.000 34  sp|Q96EY1|DNJA3_HUMAN(removed signalp:1-21) DnaJ homolog subfamily A member 3, mitochondrial OS=Homo sapiens GN=DNAJA3 PE=1 SV=2
HGM_OVER 144-222 -4.980 15  HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
NEW_HUMAN_DOMAINS 108-200 -6.740 20  sp|Q5T197|DCST1_HUMAN DC-STAMP domain-containing protein 1 OS=Homo sapiens GN=DCST1 PE=2 SV=1 (Range: 596-684)
PDB1018 1-356 -93.500 39  3lz8_A mol:protein length:329 Putative chaperone DnaJ
PfamA32U 5-67 -39.200 54  PF00226.31; Q22028_CAEEL/17-79; DnaJ domain
28-201 -9.770 PF05458.12; SIVA_HUMAN/1-175; Cd27 binding protein (Siva)
117-330 -76.200 34  PF01556.18; T0NBZ6_9EURY/129-343; DnaJ C terminal domain
SCOP207 1-80 -45.000 37  d2yuaa1 a.2.3.0 (A:8-93) automated matches {Human (Homo sapiens) [TaxId: 9606]}
40-213 -9.560 18  d2cvca_ a.138.1.1 (A:) 16-heme cytochrome c HmcA {Desulfovibrio vulgaris [TaxId: 881]}
131-209 -36.800 100  d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}
180-254 -23.100 25  d2q2ga1 b.4.1.0 (A:4-86) automated matches {Cryptosporidium parvum [TaxId: 353152]}
255-347 -28.000 24  d3agxa2 b.4.1.0 (A:246-340) automated matches {Human (Homo sapiens) [TaxId: 9606]}
VFDB 1-372 -121.000 59  [O] COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain
15 gi|16128010|ref|NP_414557.1| IS186 transposase (insL b0016 exp) [Escherichia coli str. K-12 substr. MG1655] 370 COG1018 1-357 -64.000 16  [L] COG3385 FOG: Transposase and inactivated derivatives
CSGID 298-342 -5.040 10  IDP90117 virokine protein [Monkeypox virus] MPXV_ZAI1979_005_027 [Monkeypox virus]
H.sapiens 274-336 -7.790 sp|Q14206|RCAN2_HUMAN Calcipressin-2 OS=Homo sapiens GN=RCAN2 PE=2 SV=3
HGM_OVER 324-370 -12.200 12  HGC00857 gi|162620543|dbj|BAAW01002606.1|2.0 TMP01139;
NEW_HUMAN_DOMAINS 286-353 -6.780 16  tr|B7Z676|B7Z676_HUMAN Uncharacterized protein OS=Homo sapiens GN=SLC9B2 PE=2 SV=1 (Range: 307-417)
PDB1018 1-365 -22.200 12  1mm8_A mol:protein length:481 Tn5 Transposase
PfamA32U 9-356 -33.200 11  PF04693.12; Q5MPE9_9CREN/3-342; Archaeal putative transposase ISC1217
SCOP207 54-364 -22.300 13  d1musa1 c.55.3.4 (A:4-476) Transposase inhibitor (Tn5 transposase) {Escherichia coli [TaxId: 562]}
VFDB 1-357 -64.000 16  [L] COG3385 FOG: Transposase and inactivated derivatives
16 gi|16128012|ref|NP_414559.1| regulatory protein for HokC, overlaps CDS of hokC (mokC b0018 exp) [Escherichia coli str. K-12 substr. MG1655] 69 COG1018 17-68 -5.240 17  [NU] COG4726 Tfp pilus assembly protein PilX
CSGID 3-55 -5.940 13  CPX_91710_91752 Complex of NXF1_HUMAN with TIP_SHV2C [Undefined organism]
H.sapiens 3-49 -7.940 31  sp|P23471|PTPRZ_HUMAN(removed signalp:1-24) Receptor-type tyrosine-protein phosphatase zeta OS=Homo sapiens GN=PTPRZ1 PE=1 SV=4 (Range: 1351-1650)
HGM_OVER 21-62 -5.420 11  PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF
NEW_HUMAN_DOMAINS 3-69 -5.500 sp|O43301|HS12A_HUMAN Heat shock 70 kDa protein 12A OS=Homo sapiens GN=HSPA12A PE=1 SV=2 (Range: 520-675)
PDB1018 23-69 -6.120 29  2lp1_A mol:protein length:122 C99
PfamA32U 26-66 -33.000 82  PF01848.16; HOKD_ECOLI/6-47; Hok/gef family
SCOP207 39-68 -5.350 13  d1guta_ b.40.6.1 (A:) Molybdate/tungstate binding protein MOP {Clostridium pasteurianum, MOP II [TaxId: 1501]}
VFDB 17-68 -5.240 17  [NU] COG4726 Tfp pilus assembly protein PilX
17 gi|49175991|ref|YP_025292.1| toxic membrane protein, small (hokC b4412 exp) [Escherichia coli str. K-12 substr. MG1655] 50 COG1018 1-50 -5.190 15  [S] COG4929 Uncharacterized membrane-anchored protein
CSGID 1-48 -5.820 14  IDP05658 hypothetical protein lmo0207 [Listeria monocytogenes EGD-e] lmo0207 [Listeria monocytogenes EGD-e]
H.sapiens 7-50 -6.520 23  sp|Q9C0C4|SEM4C_HUMAN(removed signalp:1-20) Semaphorin-4C OS=Homo sapiens GN=SEMA4C PE=1 SV=2 (Range: 601-813)
HGM_OVER 1-31 -4.150 20  PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;
NEW_HUMAN_DOMAINS 24-50 -4.610 14  sp|Q6AI39|K0240_HUMAN Uncharacterized protein KIAA0240 OS=Homo sapiens GN=KIAA0240 PE=2 SV=2 (Range: 83-132)
PDB1018 1-50 -4.790 28  2lp1_A mol:protein length:122 C99
PfamA32U 7-47 -31.600 82  PF01848.16; HOKD_ECOLI/6-47; Hok/gef family
SCOP207 20-49 -4.410 13  d1guta_ b.40.6.1 (A:) Molybdate/tungstate binding protein MOP {Clostridium pasteurianum, MOP II [TaxId: 1501]}
VFDB 1-50 -5.190 15  [S] COG4929 Uncharacterized membrane-anchored protein
18 gi|16128013|ref|NP_414560.1| sodium-proton antiporter (nhaA b0019 exp) [Escherichia coli str. K-12 substr. MG1655] 388 COG1018 1-388 -122.000 100  [P] COG3004 Na+/H+ antiporter
CSGID 16-388 -7.240 12  IDP91361 NhaP-type Na+/H+ and K+/H+ antiporters [Vibrio vulnificus CMCP6] VV1_2840 [Vibrio vulnificus CMCP6]
H.sapiens 18-387 -11.300 13  sp|Q86UD5|NHDC2_HUMAN Mitochondrial sodium/hydrogen exchanger NHA2 OS=Homo sapiens GN=NHEDC2 PE=1 SV=2
HGM_OVER 74-156 -4.550 10  PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]
NEW_HUMAN_DOMAINS 62-133 -5.160 16  sp|A6NCN8|YL021_HUMAN Uncharacterized protein ENSP00000372125 OS=Homo sapiens PE=4 SV=2 (Range: 144-249)
PDB1018 1-387 -119.000 99  4atv_A mol:protein length:401 NA(+)/H(+) ANTIPORTER NHAA
PfamA32U 7-380 -116.000 56  PF06965.12; C5BLF3_TERTT/10-393; Na+/H+ antiporter 1
SCOP207 16-204 -5.180 13  d4ogqa_ f.21.1.2 (A:) automated matches {Nostoc sp. [TaxId: 103690]}
VFDB 1-388 -122.000 100  [P] COG3004 Na+/H+ antiporter
19 gi|16128014|ref|NP_414561.1| DNA-binding transcriptional activator (nhaR b0020 exp) [Escherichia coli str. K-12 substr. MG1655] 301 COG1018 3-299 -53.700 16  [K] COG0583 Transcriptional regulator
CSGID 6-295 -79.700 15  IDP92556 HTH-type transcriptional regulator ilvY [Vibrio vulnificus CMCP6] VV1_1076 [Vibrio vulnificus CMCP6]
H.sapiens 10-164 -7.380 13  sp|Q12882|DPYD_HUMAN Dihydropyrimidine dehydrogenase [NADP+] OS=Homo sapiens GN=DPYD PE=1 SV=2 (Range: 1-300)
HGM_OVER 1-110 -3.920 11  PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;
NEW_HUMAN_DOMAINS 4-91 -6.540 14  sp|O60313|OPA1_HUMAN Dynamin-like 120 kDa protein, mitochondrial OS=Homo sapiens GN=OPA1 PE=1 SV=3 (Range: 825-960)
PDB1018 6-301 -76.400 14  4gwo_A mol:protein length:330 HTH-type transcriptional regulator CysB
PfamA32U 13-66 -21.900 29  PF00126.27; Q8EIK0_SHEON/8-63; Bacterial regulatory helix-turn-helix protein, lysR family
90-295 -23.000 10  PF03466.20; Q98I60_RHILO/88-294; LysR substrate binding domain
SCOP207 6-92 -37.600 27  d1ixca1 a.4.5.37 (A:1-89) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]}
94-301 -50.100 12  d1al3a_ c.94.1.1 (A:) Cofactor-binding fragment of LysR-type protein CysB {Klebsiella aerogenes [TaxId: 28451]}
VFDB 3-299 -53.700 16  [K] COG0583 Transcriptional regulator
20 gi|16128015|ref|NP_414562.1| IS1 transposase B (insB b0021 exp) [Escherichia coli str. K-12 substr. MG1655] 167 COG1018 12-166 -22.400 14  [L] COG3316 Transposase and inactivated derivatives
48-167 -70.600 28  [L] COG1662 Transposase and inactivated derivatives, IS1 family
CSGID 4-83 -8.650 16  IDP04696 gene: YPCD1.15c; hypothetical protein YPCD1.15c [Yersinia pestis CO92] YPCD1.15c [Yersinia pestis CO92]
H.sapiens 1-167 -8.690 sp|Q7Z3K3|POGZ_HUMAN Pogo transposable element with ZNF domain OS=Homo sapiens GN=POGZ PE=1 SV=2 (Range: 901-1200)
HGM_OVER 4-56 -7.020 HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;
NEW_HUMAN_DOMAINS 1-58 -6.190 14  sp|Q14153|FA53B_HUMAN Protein FAM53B OS=Homo sapiens GN=FAM53B PE=1 SV=2 (Range: 34-90)
PDB1018 4-167 -10.700 12  1k6y_A mol:protein length:212 Integrase
44-158 -12.900 14  3kkr_A mol:protein length:152 Integrase
PfamA32U 37-167 -84.600 99  PF03400.13; Q32H87_SHIDS/20-150; IS1 transposase
SCOP207 46-158 -11.500 15  d3kkra1 c.55.3.0 (A:60-208) automated matches {Bovine immunodeficiency virus [TaxId: 417296]}
VFDB 12-166 -22.400 14  [L] COG3316 Transposase and inactivated derivatives
48-167 -70.600 28  [L] COG1662 Transposase and inactivated derivatives, IS1 family


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.