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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4125next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16127995|ref|NP_414542.1| thr operon leader peptide (thrL b0001 exp) [Escherichia coli str. K-12 substr. MG1655] 21 CSGID 1-19 -6.220 21  IDP92694 TpgX protein [Staphylococcus aureus subsp. aureus ST398] YP_005735174 [Staphylococcus aureus subsp. aureus ST398]
2 gi|16127996|ref|NP_414543.1| fused aspartokinase I and homoserine dehydrogenase I (thrA b0002 exp) [Escherichia coli str. K-12 substr. MG1655] 820 CSGID 1-817 -207.000 30  IDP00585 gene: metL; bifunctional aspartate kinase II/homoserine dehydrogenase II YPO0116 [Yersinia pestis CO92]
3 gi|16127997|ref|NP_414544.1| homoserine kinase (thrB b0003 exp) [Escherichia coli str. K-12 substr. MG1655] 310 CSGID 2-308 -87.400 23  IDP90702 gene: thrB; homoserine kinase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0134 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
4 gi|16127998|ref|NP_414545.1| threonine synthase (thrC b0004 exp) [Escherichia coli str. K-12 substr. MG1655] 428 CSGID 1-428 -118.000 93  IDP00901 gene: thrC; threonine synthase STM0004 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
5 gi|16127999|ref|NP_414546.1|(removed signal:1-23) predicted protein (yaaX b0005 exp) [Escherichia coli str. K-12 substr. MG1655] 75 CSGID 1-75 -23.700 46  IDP01747 gene: ypeC; putative periplasmic protein [Salmonella typhimurium LT2] STM2407 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
6 gi|16128000|ref|NP_414547.1| conserved protein, UPF0246 family (yaaA b0006 exp) [Escherichia coli str. K-12 substr. MG1655] 258 CSGID 1-258 -109.000 65  IDP91427 hypothetical protein VV1_0535 [Vibrio vulnificus CMCP6] VV1_0535 [Vibrio vulnificus CMCP6]
7 gi|16128001|ref|NP_414548.1| predicted transporter (yaaJ b0007 exp) [Escherichia coli str. K-12 substr. MG1655] 476 CSGID 1-476 -136.000 49  IDP91426 Na+/alanine symporter [Vibrio vulnificus CMCP6] VV1_0536 [Vibrio vulnificus CMCP6]
8 gi|16128002|ref|NP_414549.1| transaldolase B (talB b0008 exp) [Escherichia coli str. K-12 substr. MG1655] 317 CSGID 1-317 -98.100 47  IDP02095 gene: talA; transaldolase B [Francisella tularensis subsp. tularensis SCHU S4] FTT1093c [Francisella tularensis subsp. tularensis SCHU S4]
9 gi|16128003|ref|NP_414550.1| molybdochelatase incorporating molybdenum into molybdopterin (mog b0009 exp) [Escherichia coli str. K-12 substr. MG1655] 195 CSGID 1-188 -66.200 50  IDP06143 gene: mogA; molybdenum cofactor biosynthesis protein MogA [Helicobacter pylori J99] NP_223453 [Helicobacter pylori J99]
10 gi|16128004|ref|NP_414551.1| inner membrane protein, Grp1_Fun34_YaaH family (yaaH b0010 exp) [Escherichia coli str. K-12 substr. MG1655] 188 CSGID 3-188 -92.600 61  IDP91444 hypothetical protein VV1_0416 [Vibrio vulnificus CMCP6] VV1_0416 [Vibrio vulnificus CMCP6]
11 gi|16128005|ref|NP_414552.1| conserved protein, UPF0174 family (yaaW b0011 exp) [Escherichia coli str. K-12 substr. MG1655] 237 CSGID 50-141 -5.620 IDP91862 DNA-binding protein [Streptococcus equi subsp. zooepidemicus] SZO_00390 [Streptococcus equi subsp. zooepidemicus]
12 gi|16128007|ref|NP_414554.1|(removed signal:1-23) conserved protein, UPF0412 family (yaaI b0013 exp) [Escherichia coli str. K-12 substr. MG1655] 111 CSGID 32-111 -6.440 13  IDP91909 cell wall surface anchor family protein, partial [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100002785 [Streptococcus pneumoniae str. Canada MDR_19A]
13 gi|16128008|ref|NP_414555.1| chaperone Hsp70, co-chaperone with DnaJ (dnaK b0014 exp) [Escherichia coli str. K-12 substr. MG1655] 638 CSGID 1-638 -173.000 73  IDP02393 gene: dnaK; heat shock protein DnaK [Francisella tularensis subsp. tularensis SCHU S4] FTT1269c [Francisella tularensis subsp. tularensis SCHU S4]
14 gi|16128009|ref|NP_414556.1| chaperone Hsp40, co-chaperone with DnaK (dnaJ b0015 exp) [Escherichia coli str. K-12 substr. MG1655] 376 CSGID 1-376 -125.000 87  IDP00478 gene: dnaJ; chaperone protein DnaJ YPO0469 [Yersinia pestis CO92]
15 gi|16128010|ref|NP_414557.1| IS186 transposase (insL b0016 exp) [Escherichia coli str. K-12 substr. MG1655] 370 CSGID 298-342 -5.040 10  IDP90117 virokine protein [Monkeypox virus] MPXV_ZAI1979_005_027 [Monkeypox virus]
16 gi|16128012|ref|NP_414559.1| regulatory protein for HokC, overlaps CDS of hokC (mokC b0018 exp) [Escherichia coli str. K-12 substr. MG1655] 69 CSGID 3-55 -5.940 13  CPX_91710_91752 Complex of NXF1_HUMAN with TIP_SHV2C [Undefined organism]
17 gi|49175991|ref|YP_025292.1| toxic membrane protein, small (hokC b4412 exp) [Escherichia coli str. K-12 substr. MG1655] 50 CSGID 1-48 -5.820 14  IDP05658 hypothetical protein lmo0207 [Listeria monocytogenes EGD-e] lmo0207 [Listeria monocytogenes EGD-e]
18 gi|16128013|ref|NP_414560.1| sodium-proton antiporter (nhaA b0019 exp) [Escherichia coli str. K-12 substr. MG1655] 388 CSGID 16-388 -7.240 12  IDP91361 NhaP-type Na+/H+ and K+/H+ antiporters [Vibrio vulnificus CMCP6] VV1_2840 [Vibrio vulnificus CMCP6]
19 gi|16128014|ref|NP_414561.1| DNA-binding transcriptional activator (nhaR b0020 exp) [Escherichia coli str. K-12 substr. MG1655] 301 CSGID 6-295 -79.700 15  IDP92556 HTH-type transcriptional regulator ilvY [Vibrio vulnificus CMCP6] VV1_1076 [Vibrio vulnificus CMCP6]
20 gi|16128015|ref|NP_414562.1| IS1 transposase B (insB b0021 exp) [Escherichia coli str. K-12 substr. MG1655] 167 CSGID 4-83 -8.650 16  IDP04696 gene: YPCD1.15c; hypothetical protein YPCD1.15c [Yersinia pestis CO92] YPCD1.15c [Yersinia pestis CO92]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Igarashi Y, Eroshkin A, Gramatikova S, Gramatikoff K, Zhang Y, Smith JW,Osterman AL, Godzik A. CutDB: a proteolytic event database. Nucleic Acids Res. 2007 Jan;35(Database issue):D546-9. Epub 2006 Nov 16.