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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4125next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16127995|ref|NP_414542.1| thr operon leader peptide (thrL b0001 exp) [Escherichia coli str. K-12 substr. MG1655] 21 PfamA32U 1-11 -2.700 36  PF10471.9; C1HA50_PARBA/1-73; Anaphase-promoting complex APC subunit CDC26
2 gi|16127996|ref|NP_414543.1| fused aspartokinase I and homoserine dehydrogenase I (thrA b0002 exp) [Escherichia coli str. K-12 substr. MG1655] 820 PfamA32U 3-284 -12.200 14  PF00696.28; PROJ_BACSU/8-238; Amino acid kinase family
614-811 -39.000 27  PF00742.19; R5EAW4_9BURK/138-316; Homoserine dehydrogenase
3 gi|16127997|ref|NP_414544.1| homoserine kinase (thrB b0003 exp) [Escherichia coli str. K-12 substr. MG1655] 310 PfamA32U 83-150 -20.600 25  PF00288.26; ISPE_BACSU/86-144; GHMP kinases N terminal domain
210-286 -10.400 15  PF08544.13; Q64T43_BACFR/846-929; GHMP kinases C terminal
4 gi|16127998|ref|NP_414545.1| threonine synthase (thrC b0004 exp) [Escherichia coli str. K-12 substr. MG1655] 428 PfamA32U 2-80 -30.400 32  PF14821.6; Q21LF7_SACD2/2-80; Threonine synthase N terminus
92-375 -21.200 13  PF00291.25; A0Z504_9GAMM/17-322; Pyridoxal-phosphate dependent enzyme
5 gi|16127999|ref|NP_414546.1|(removed signal:1-23) predicted protein (yaaX b0005 exp) [Escherichia coli str. K-12 substr. MG1655] 75 PfamA32U 2-74 -27.500 31  PF10697.9; Q0WCT3_YERPE/39-126; Protein of unknown function (DUF2502 topsan)
6 gi|16128000|ref|NP_414547.1| conserved protein, UPF0246 family (yaaA b0006 exp) [Escherichia coli str. K-12 substr. MG1655] 258 PfamA32U 1-243 -102.000 60  PF03883.14; D4ZH13_SHEVD/1-244; Peroxide stress protein YaaA
7 gi|16128001|ref|NP_414548.1| predicted transporter (yaaJ b0007 exp) [Escherichia coli str. K-12 substr. MG1655] 476 PfamA32U 47-453 -110.000 46  PF01235.17; C5DAE3_GEOSW/49-446; Sodium:alanine symporter family
8 gi|16128002|ref|NP_414549.1| transaldolase B (talB b0008 exp) [Escherichia coli str. K-12 substr. MG1655] 317 PfamA32U 14-313 -93.600 58  PF00923.19; Q966C7_CAEEL/13-315; Transaldolase/Fructose-6-phosphate aldolase
9 gi|16128003|ref|NP_414550.1| molybdochelatase incorporating molybdenum into molybdopterin (mog b0009 exp) [Escherichia coli str. K-12 substr. MG1655] 195 PfamA32U 8-153 -26.000 19  PF00994.24; CINAL_DESPS/4-169; Probable molybdopterin binding domain
10 gi|16128004|ref|NP_414551.1| inner membrane protein, Grp1_Fun34_YaaH family (yaaH b0010 exp) [Escherichia coli str. K-12 substr. MG1655] 188 PfamA32U 3-187 -87.700 32  PF01184.19; A7TND9_VANPO/71-277; GPR1/FUN34/yaaH family
11 gi|16128005|ref|NP_414552.1| conserved protein, UPF0174 family (yaaW b0011 exp) [Escherichia coli str. K-12 substr. MG1655] 237 PfamA32U 5-39 -10.300 28  PF13099.6; E3D0J1_9BACT/3-37; Domain of unknown function (DUF3944 topsan)
12 gi|16128007|ref|NP_414554.1|(removed signal:1-23) conserved protein, UPF0412 family (yaaI b0013 exp) [Escherichia coli str. K-12 substr. MG1655] 111 PfamA32U 1-109 -57.900 79  PF10807.8; A6T4F3_KLEP7/3-132; Protein of unknown function (DUF2541 topsan)
13 gi|16128008|ref|NP_414555.1| chaperone Hsp70, co-chaperone with DnaJ (dnaK b0014 exp) [Escherichia coli str. K-12 substr. MG1655] 638 PfamA32U 4-604 -165.000 62  PF00012.20; HSP7E_DROME/54-653; Hsp70 protein
14 gi|16128009|ref|NP_414556.1| chaperone Hsp40, co-chaperone with DnaK (dnaJ b0015 exp) [Escherichia coli str. K-12 substr. MG1655] 376 PfamA32U 5-67 -39.200 54  PF00226.31; Q22028_CAEEL/17-79; DnaJ domain
28-201 -9.770 PF05458.12; SIVA_HUMAN/1-175; Cd27 binding protein (Siva)
117-330 -76.200 34  PF01556.18; T0NBZ6_9EURY/129-343; DnaJ C terminal domain
15 gi|16128010|ref|NP_414557.1| IS186 transposase (insL b0016 exp) [Escherichia coli str. K-12 substr. MG1655] 370 PfamA32U 9-356 -33.200 11  PF04693.12; Q5MPE9_9CREN/3-342; Archaeal putative transposase ISC1217
16 gi|16128012|ref|NP_414559.1| regulatory protein for HokC, overlaps CDS of hokC (mokC b0018 exp) [Escherichia coli str. K-12 substr. MG1655] 69 PfamA32U 26-66 -33.000 82  PF01848.16; HOKD_ECOLI/6-47; Hok/gef family
17 gi|49175991|ref|YP_025292.1| toxic membrane protein, small (hokC b4412 exp) [Escherichia coli str. K-12 substr. MG1655] 50 PfamA32U 7-47 -31.600 82  PF01848.16; HOKD_ECOLI/6-47; Hok/gef family
18 gi|16128013|ref|NP_414560.1| sodium-proton antiporter (nhaA b0019 exp) [Escherichia coli str. K-12 substr. MG1655] 388 PfamA32U 7-380 -116.000 56  PF06965.12; C5BLF3_TERTT/10-393; Na+/H+ antiporter 1
19 gi|16128014|ref|NP_414561.1| DNA-binding transcriptional activator (nhaR b0020 exp) [Escherichia coli str. K-12 substr. MG1655] 301 PfamA32U 13-66 -21.900 29  PF00126.27; Q8EIK0_SHEON/8-63; Bacterial regulatory helix-turn-helix protein, lysR family
90-295 -23.000 10  PF03466.20; Q98I60_RHILO/88-294; LysR substrate binding domain
20 gi|16128015|ref|NP_414562.1| IS1 transposase B (insB b0021 exp) [Escherichia coli str. K-12 substr. MG1655] 167 PfamA32U 37-167 -84.600 99  PF03400.13; Q32H87_SHIDS/20-150; IS1 transposase

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.