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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 3770next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|238922433|ref|YP_002935946.1| chromosomal replication initiation protein (EUBREC_0001) [Eubacterium rectale ATCC 33656] 453 PDB1018 7-453 -116.000 34  2z4r_A mol:protein length:440 Chromosomal replication initiator protein dnaA
2 gi|238922434|ref|YP_002935947.1| DNA polymerase III, beta subunit (EUBREC_0002) [Eubacterium rectale ATCC 33656] 370 PDB1018 1-370 -106.000 100  3t0p_A mol:protein length:371 DNA polymerase III, beta subunit
3 gi|238922435|ref|YP_002935948.1| hypothetical protein (EUBREC_0003) [Eubacterium rectale ATCC 33656] 71 PDB1018 9-70 -37.900 35  1p9k_A mol:protein length:79 orf, hypothetical protein
4 gi|238922436|ref|YP_002935949.1| DNA replication and repair protein RecF (EUBREC_0004) [Eubacterium rectale ATCC 33656] 362 PDB1018 1-360 -104.000 38  5z68_A mol:protein length:373 DNA replication and repair protein RecF
5 gi|238922437|ref|YP_002935950.1| DNA gyrase, B subunit (EUBREC_0005) [Eubacterium rectale ATCC 33656] 645 PDB1018 2-645 -181.000 53  4juo_C mol:protein length:670 DNA topoisomerase 4 subunit B
6 gi|238922438|ref|YP_002935951.1| DNA gyrase, A subunit (EUBREC_0006) [Eubacterium rectale ATCC 33656] 852 PDB1018 1-493 -123.000 61  2xco_A mol:protein length:726 DNA GYRASE SUBUNIT B, DNA GYRASE SUBUNIT A
31-756 -130.000 37  1zvu_A mol:protein length:716 Topoisomerase IV subunit A
500-810 -41.100 31  1suu_A mol:protein length:312 DNA gyrase subunit A
609-852 -23.400 14  4mn4_A mol:protein length:259 DNA topoisomerase 4 subunit A
7 gi|238922439|ref|YP_002935952.1| hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit (EUBREC_0007) [Eubacterium rectale ATCC 33656] 281 PDB1018 2-281 -81.600 26  5l2r_A mol:protein length:604 Fumarate hydratase
8 gi|238922440|ref|YP_002935953.1| hypothetical protein (EUBREC_0008) [Eubacterium rectale ATCC 33656] 47 PDB1018 1-22 -6.280 31  6fti_1 mol:protein length:162 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1,RPN1
9 gi|238922441|ref|YP_002935954.1| fumarate hydratase subunit B (EUBREC_0009) [Eubacterium rectale ATCC 33656] 183 PDB1018 1-175 -81.100 41  2isb_A mol:protein length:192 Fumarase
10 gi|238922442|ref|YP_002935955.1| putative oxidoreductase (EUBREC_0016) [Eubacterium rectale ATCC 33656] 329 PDB1018 3-329 -105.000 24  2o48_X mol:protein length:334 Dimeric dihydrodiol dehydrogenase
11 gi|238922443|ref|YP_002935956.1| transcription repressor of fructose operon FruR (EUBREC_0017) [Eubacterium rectale ATCC 33656] 247 PDB1018 1-57 -20.400 21  4hob_A mol:protein length:69 Putative uncharacterized protein
1-110 -16.200 20  1j5y_A mol:protein length:187 TRANSCRIPTIONAL REGULATOR, BIOTIN REPRESSOR FAMILY
54-212 -14.200 12  3enq_A mol:protein length:235 Ribose-5-phosphate isomerase A
12 gi|238922444|ref|YP_002935957.1| fructose-1-phosphate kinase (EUBREC_0018) [Eubacterium rectale ATCC 33656] 305 PDB1018 1-304 -91.100 44  2abq_A mol:protein length:306 fructose 1-phosphate kinase
13 gi|238922445|ref|YP_002935958.1| PTS system, fructose-specific, IIABC component (EUBREC_0019) [Eubacterium rectale ATCC 33656] 642 PDB1018 1-151 -52.400 22  3urr_A mol:protein length:153 PTS IIA-like nitrogen-regulatory protein PtsN
1-636 -12.500 12  4yzf_A mol:protein length:911 Band 3 anion transport protein
173-278 -49.800 50  2r48_A mol:protein length:106 Phosphotransferase system (PTS) mannose-specific enzyme IIBCA component
14 gi|238922446|ref|YP_002935959.1| chaperone protein DnaK (EUBREC_0020) [Eubacterium rectale ATCC 33656] 586 PDB1018 1-586 -160.000 51  5nro_A mol:protein length:611 Chaperone protein DnaK
15 gi|238922447|ref|YP_002935960.1| hypothetical protein (EUBREC_0021) [Eubacterium rectale ATCC 33656] 290 PDB1018 36-138 -11.000 11  6fkf_p mol:protein length:222 ATP synthase subunit b`, chloroplastic
16 gi|238922448|ref|YP_002935961.1| DNA-binding response regulator (EUBREC_0022) [Eubacterium rectale ATCC 33656] 230 PDB1018 2-230 -102.000 36  2gwr_A mol:protein length:238 DNA-binding response regulator mtrA
17 gi|238922449|ref|YP_002935962.1|(removed signalp:1-29) hypothetical protein (EUBREC_0023) [Eubacterium rectale ATCC 33656] 428 PDB1018 126-427 -48.200 18  4biu_A mol:protein length:298 SENSOR PROTEIN CPXA
176-427 -49.200 22  4q20_A mol:protein length:268 Sensor protein DivL
18 gi|238922450|ref|YP_002935963.1| hypothetical protein (EUBREC_0024) [Eubacterium rectale ATCC 33656] 761 PDB1018 5-761 -152.000 19  2b3x_A mol:protein length:888 Iron-responsive element binding protein 1
19 gi|238922451|ref|YP_002935964.1| hypothetical protein (EUBREC_0025) [Eubacterium rectale ATCC 33656] 437 PDB1018 294-388 -8.160 19  3rlb_A mol:protein length:192 ThiT
20 gi|238922452|ref|YP_002935965.1| hypothetical protein (EUBREC_0026) [Eubacterium rectale ATCC 33656] 877 PDB1018 2-187 -15.400 15  5waq_A mol:protein length:251 Outer membrane protein assembly factor BamD
2-859 -12.600 5yfp_A mol:protein length:1336 Exocyst complex component SEC3
606-876 -41.400 17  3syk_A mol:protein length:309 Protein CbbX


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Igarashi Y, Eroshkin A, Gramatikova S, Gramatikoff K, Zhang Y, Smith JW,Osterman AL, Godzik A. CutDB: a proteolytic event database. Nucleic Acids Res. 2007 Jan;35(Database issue):D546-9. Epub 2006 Nov 16.