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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 3770next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|238922433|ref|YP_002935946.1| chromosomal replication initiation protein (EUBREC_0001) [Eubacterium rectale ATCC 33656] 453 PfamA32U 5-71 -14.200 20  PF11638.8; DNAA_LAWIP/5-67; DnaA N-terminal domain
113-334 -97.600 60  PF00308.18; DNAA_STRCO/317-535; Bacterial dnaA protein
149-442 -10.100 13  PF03969.16; ZAPE_ECOLI/4-371; AFG1-like ATPase
361-429 -35.100 42  PF08299.11; D9QS97_ACEAZ/358-426; Bacterial dnaA protein helix-turn-helix
2 gi|238922434|ref|YP_002935947.1| DNA polymerase III, beta subunit (EUBREC_0002) [Eubacterium rectale ATCC 33656] 370 PfamA32U 1-118 -46.800 33  PF00712.19; DPO3B_CAUVC/1-121; DNA polymerase III beta subunit, N-terminal domain
128-243 -49.500 28  PF02767.16; DPO3B_PSEPK/129-244; DNA polymerase III beta subunit, central domain
245-364 -44.900 29  PF02768.15; DPO3B_BACSU/253-376; DNA polymerase III beta subunit, C-terminal domain
3 gi|238922435|ref|YP_002935948.1| hypothetical protein (EUBREC_0003) [Eubacterium rectale ATCC 33656] 71 PfamA32U 6-69 -37.000 57  PF13275.6; D4IXS8_BUTFI/4-68; S4 domain
4 gi|238922436|ref|YP_002935949.1| DNA replication and repair protein RecF (EUBREC_0004) [Eubacterium rectale ATCC 33656] 362 PfamA32U 1-339 -23.900 15  PF13175.6; I1YS32_PREI7/1-378; AAA ATPase domain
5 gi|238922437|ref|YP_002935950.1| DNA gyrase, B subunit (EUBREC_0005) [Eubacterium rectale ATCC 33656] 645 PfamA32U 41-145 -14.200 16  PF13589.6; A5G4D8_GEOUR/22-165; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
230-400 -59.600 46  PF00204.25; A9KS52_LACP7/226-396; DNA gyrase B
538-638 -37.000 19  PF16898.5; K5XBZ3_PHACS/641-767; C-terminal associated domain of TOPRIM
6 gi|238922438|ref|YP_002935951.1| DNA gyrase, A subunit (EUBREC_0006) [Eubacterium rectale ATCC 33656] 852 PfamA32U 33-465 -66.000 21  PF00521.20; A0A0D1DXS4_USTMA/785-1232; DNA gyrase/topoisomerase IV, subunit A
7 gi|238922439|ref|YP_002935952.1| hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit (EUBREC_0007) [Eubacterium rectale ATCC 33656] 281 PfamA32U 11-278 -105.000 55  PF05681.14; H3K4A5_9FIRM/11-279; Fumarate hydratase (Fumerase)
8 gi|238922440|ref|YP_002935953.1| hypothetical protein (EUBREC_0008) [Eubacterium rectale ATCC 33656] 47 PfamA32U 16-43 -6.250 21  PF18004.1; H0EIK8_GLAL7/868-1046; 26S proteasome regulatory subunit RPN2 C-terminal domain
9 gi|238922441|ref|YP_002935954.1| fumarate hydratase subunit B (EUBREC_0009) [Eubacterium rectale ATCC 33656] 183 PfamA32U 1-175 -84.400 38  PF05683.12; W4Y8Y1_STRPU/30-236; Fumarase C-terminus
10 gi|238922442|ref|YP_002935955.1| putative oxidoreductase (EUBREC_0016) [Eubacterium rectale ATCC 33656] 329 PfamA32U 4-122 -31.800 16  PF01408.22; YEAH_SCHPO/36-187; Oxidoreductase family, NAD-binding Rossmann fold
134-240 -21.200 16  PF02894.17; IOLW_BACSU/143-250; Oxidoreductase family, C-terminal alpha/beta domain
11 gi|238922443|ref|YP_002935956.1| transcription repressor of fructose operon FruR (EUBREC_0017) [Eubacterium rectale ATCC 33656] 247 PfamA32U 1-126 -32.500 11  PF06163.11; A0A070SGS2_ECOLX/1-127; Bacterial protein of unknown function (DUF977 topsan)
76-232 -58.400 26  PF00455.22; A9CFA5_AGRFC/78-235; DeoR C terminal sensor domain
12 gi|238922444|ref|YP_002935957.1| fructose-1-phosphate kinase (EUBREC_0018) [Eubacterium rectale ATCC 33656] 305 PfamA32U 11-286 -31.000 14  PF00294.24; ADK_YEAST/21-336; pfkB family carbohydrate kinase
13 gi|238922445|ref|YP_002935958.1| PTS system, fructose-specific, IIABC component (EUBREC_0019) [Eubacterium rectale ATCC 33656] 642 PfamA32U 5-148 -22.200 21  PF00359.22; Q9KMS5_VIBCH/6-152; Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
356-640 -12.700 17  PF13303.6; Q9A1Q9_STRP1/29-336; Phosphotransferase system, EIIC
14 gi|238922446|ref|YP_002935959.1| chaperone protein DnaK (EUBREC_0020) [Eubacterium rectale ATCC 33656] 586 PfamA32U 4-586 -162.000 52  PF00012.20; HSP7E_DROME/54-653; Hsp70 protein
15 gi|238922447|ref|YP_002935960.1| hypothetical protein (EUBREC_0021) [Eubacterium rectale ATCC 33656] 290 PfamA32U 3-128 -10.700 PF05103.13; Q8E178_STRA5/3-143; DivIVA protein
16 gi|238922448|ref|YP_002935961.1| DNA-binding response regulator (EUBREC_0022) [Eubacterium rectale ATCC 33656] 230 PfamA32U 2-212 -52.200 14  PF01993.18; F6D7B4_METPW/3-276; methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase
17 gi|238922449|ref|YP_002935962.1|(removed signalp:1-29) hypothetical protein (EUBREC_0023) [Eubacterium rectale ATCC 33656] 428 PfamA32U 206-270 -15.100 23  PF00512.25; Q55783_SYNY3/185-253; His Kinase A (phospho-acceptor) domain
318-428 -24.700 28  PF02518.26; O52937_9CYAN/626-739; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
18 gi|238922450|ref|YP_002935963.1| hypothetical protein (EUBREC_0024) [Eubacterium rectale ATCC 33656] 761 PfamA32U 47-479 -104.000 21  PF00330.20; D2R1Y9_PIRSD/11-461; Aconitase family (aconitate hydratase)
549-695 -37.600 21  PF00694.19; ACON_BOVIN/582-712; Aconitase C-terminal domain
549-761 -30.800 14  PF06434.13; Q01EA0_OSTTA/235-442; Aconitate hydratase 2 N-terminus
19 gi|238922451|ref|YP_002935964.1| hypothetical protein (EUBREC_0025) [Eubacterium rectale ATCC 33656] 437 PfamA32U 53-404 -57.400 18  PF01594.16; Y338_HAEIN/10-332; AI-2E family transporter
20 gi|238922452|ref|YP_002935965.1| hypothetical protein (EUBREC_0026) [Eubacterium rectale ATCC 33656] 877 PfamA32U 8-169 -11.400 12  PF16918.5; V9XE69_9NOCA/412-767; Protein kinase G tetratricopeptide repeat
16-288 -10.500 13  PF12569.8; A7S752_NEMVE/188-686; NMDA receptor-regulated protein 1
25-769 -10.400 PF17825.1; G1PD96_MYOLU/1-1455; Family of unknown function (DUF5587 topsan)
39-198 -14.000 16  PF13525.6; D3V9W2_XENNA/28-237; Outer membrane lipoprotein
633-844 -16.000 10  PF05673.13; Q0K6N5_CUPNH/29-287; Protein of unknown function (DUF815 topsan)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.