FFAS03 list of results E.rectale / VFDB

Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|238922433|ref|YP_002935946.1| chromosomal replication initiation protein (EUBREC_0001) [Eubacterium rectale ATCC 33656] 453 VFDB 149-317 -7.230 11 VFG006582(gi:15645649) (flhF) flagellar biosynthesis protein [Pse5Ac7Ac (AI150)] [Helicobacter pylori 26695]
2 gi|238922434|ref|YP_002935947.1| DNA polymerase III, beta subunit (EUBREC_0002) [Eubacterium rectale ATCC 33656] 370 VFDB 14-178 -3.710 12 VFG002484(gi:53722528) (tagC-5) Type VI secretion system protein TssF [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
3 gi|238922435|ref|YP_002935948.1| hypothetical protein (EUBREC_0003) [Eubacterium rectale ATCC 33656] 71 VFDB 1-66 -5.170 18 VFG001211(gi:15599751) (pilY2) type 4 fimbrial biogenesis protein PilY2 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
4 gi|238922436|ref|YP_002935949.1| DNA replication and repair protein RecF (EUBREC_0004) [Eubacterium rectale ATCC 33656] 362 VFDB 2-326 -10.400 14 VFG037118(gi:15676638) (recN) DNA repair protein RecN [RecN (VF0457)] [Neisseria meningitidis MC58]
5 gi|238922437|ref|YP_002935950.1| DNA gyrase, B subunit (EUBREC_0005) [Eubacterium rectale ATCC 33656] 645 VFDB 3-538 -6.730 12 VFG000434(gi:17233482) (pefC) plasmid-encoded fimbriae usher protein PefC [Pef (VF0104)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
6 gi|238922438|ref|YP_002935951.1| DNA gyrase, A subunit (EUBREC_0006) [Eubacterium rectale ATCC 33656] 852 VFDB 45-766 -7.640 10 VFG001960(gi:15792750) (Cj1432c) sugar transferase [Capsule (VF0323)] [Campylobacter jejuni subsp. jejuni NCTC 11168]
7 gi|238922439|ref|YP_002935952.1| hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit (EUBREC_0007) [Eubacterium rectale ATCC 33656] 281 VFDB 1-235 -5.140 11 VFG012833(gi:56404034) (ipaH1.4) type III secretion system effector ipaH1.4, E3 ubiquitin ligase [T3SS (SS011)] [Shigella flexneri 2a str. 301]
8 gi|238922440|ref|YP_002935953.1| hypothetical protein (EUBREC_0008) [Eubacterium rectale ATCC 33656] 47 VFDB 9-39 -3.270 16 VFG042444(gi:5523844) (afaD-VIII) AfaD-VIII [Afimbrial adhesin, AfaE-VIII (AI015)] [Escherichia coli str. 239 KH 89]
9 gi|238922441|ref|YP_002935954.1| fumarate hydratase subunit B (EUBREC_0009) [Eubacterium rectale ATCC 33656] 183 VFDB 2-159 -6.120 20 VFG000291(gi:15645157) (cagU) type IV secretion system protein Cag11/CagU [Type IV secretion system (VF0060)] [Helicobacter pylori 26695]
10 gi|238922442|ref|YP_002935955.1| putative oxidoreductase (EUBREC_0016) [Eubacterium rectale ATCC 33656] 329 VFDB 2-328 -43.400 14 VFG000038(gi:33591351) (bplA) probable oxidoreductase [LPS (VF0033)] [Bordetella pertussis Tohama I]
11 gi|238922443|ref|YP_002935956.1| transcription repressor of fructose operon FruR (EUBREC_0017) [Eubacterium rectale ATCC 33656] 247 VFDB 1-76 -18.600 10 VFG012327(gi:91210136) (sfaC) S fimbrial switch regulatory protein SfaC [S fimbriae (VF0222)] [Escherichia coli UTI89]
12 gi|238922444|ref|YP_002935957.1| fructose-1-phosphate kinase (EUBREC_0018) [Eubacterium rectale ATCC 33656] 305 VFDB 15-304 -17.800 17 VFG002027(gi:15792474) (hldE) bifunctional D-beta-D-heptose 7-phosphate kinase/D-beta-D-heptose 1-phosphate adenylyltransferase [LOS (VF0326)] [Campylobacter jejuni subsp. jejuni NCTC 11168]
13 gi|238922445|ref|YP_002935958.1| PTS system, fructose-specific, IIABC component (EUBREC_0019) [Eubacterium rectale ATCC 33656] 642 VFDB 314-642 -5.550 18 VFG010882(gi:52841097) (ccmF) cytochrome c heme lyase subunit CcmF [Cytochrome c muturation (ccm) locus (CVF358)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
14 gi|238922446|ref|YP_002935959.1| chaperone protein DnaK (EUBREC_0020) [Eubacterium rectale ATCC 33656] 586 VFDB 3-350 -9.030 13 VFG010479(gi:52841162) (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI111)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
15 gi|238922447|ref|YP_002935960.1| hypothetical protein (EUBREC_0021) [Eubacterium rectale ATCC 33656] 290 VFDB 42-149 -10.200 13 VFG002470(gi:53722573) (orgB) Type III secretion system protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
16 gi|238922448|ref|YP_002935961.1| DNA-binding response regulator (EUBREC_0022) [Eubacterium rectale ATCC 33656] 230 VFDB 1-230 -71.600 33 VFG001386(gi:15607897) (phoP) Possible two component system response transcriptional positive regulator PhoP [PhoP (VF0286)] [Mycobacterium tuberculosis H37Rv]
17 gi|238922449|ref|YP_002935962.1|(removed signalp:1-29) hypothetical protein (EUBREC_0023) [Eubacterium rectale ATCC 33656] 428 VFDB 60-426 -10.900 11 VFG002192(gi:29376363) (fsrC) histidine kinase, putative [Fsr (VF0360)] [Enterococcus faecalis V583]
125-423 -35.800 19 VFG009810(gi:15607898) (phoR) Possible two component system response sensor kinase membrane associated PhoR [PhoP/R (CVF331)] [Mycobacterium tuberculosis H37Rv]
18 gi|238922450|ref|YP_002935963.1| hypothetical protein (EUBREC_0024) [Eubacterium rectale ATCC 33656] 761 VFDB 10-737 -5.440 10 VFG000165(gi:15599421) (pchF) pyochelin synthetase PchF [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
19 gi|238922451|ref|YP_002935964.1| hypothetical protein (EUBREC_0025) [Eubacterium rectale ATCC 33656] 437 VFDB 60-368 -6.700 8 VFG000019(gi:33594646) (ptlD) Ptl Type IV secretion system VirB6 homolog protein PtlA [Ptx (VF0026)] [Bordetella pertussis Tohama I]
20 gi|238922452|ref|YP_002935965.1| hypothetical protein (EUBREC_0026) [Eubacterium rectale ATCC 33656] 877 VFDB 23-862 -19.500 7 VFG000337(gi:16272928) (iga1) immunoglobin A1 protease [IgA1 protease (VF0045)] [Haemophilus influenzae Rd KW20]
564-876 -42.900 16 VFG002380(gi:15611004) (eccA1) ESX-1 type VII secretion system AAA+ ATPase EccA1 [ESX-1 (VF0315)] [Mycobacterium tuberculosis H37Rv]

FFAS is supported by the NIH grant R01-GM087218-01

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#	Query	Length	Result vs.	Range	Score	%id	Covered by template(s)
1	`gi\|238922433\|ref\|YP_002935946.1\| chromosomal replication initiation protein (EUBREC_0001) [Eubacterium rectale ATCC 33656]`	`453`	`VFDB`	`149-317`	`-7.230`	`11`	`VFG006582(gi:15645649) (flhF) flagellar biosynthesis protein [Pse5Ac7Ac (AI150)] [Helicobacter pylori 26695]`
2	`gi\|238922434\|ref\|YP_002935947.1\| DNA polymerase III, beta subunit (EUBREC_0002) [Eubacterium rectale ATCC 33656]`	`370`	`VFDB`	`14-178`	`-3.710`	`12`	`VFG002484(gi:53722528) (tagC-5) Type VI secretion system protein TssF [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]`
3	`gi\|238922435\|ref\|YP_002935948.1\| hypothetical protein (EUBREC_0003) [Eubacterium rectale ATCC 33656]`	`71`	`VFDB`	`1-66`	`-5.170`	`18`	`VFG001211(gi:15599751) (pilY2) type 4 fimbrial biogenesis protein PilY2 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]`
4	`gi\|238922436\|ref\|YP_002935949.1\| DNA replication and repair protein RecF (EUBREC_0004) [Eubacterium rectale ATCC 33656]`	`362`	`VFDB`	`2-326`	`-10.400`	`14`	`VFG037118(gi:15676638) (recN) DNA repair protein RecN [RecN (VF0457)] [Neisseria meningitidis MC58]`
5	`gi\|238922437\|ref\|YP_002935950.1\| DNA gyrase, B subunit (EUBREC_0005) [Eubacterium rectale ATCC 33656]`	`645`	`VFDB`	`3-538`	`-6.730`	`12`	`VFG000434(gi:17233482) (pefC) plasmid-encoded fimbriae usher protein PefC [Pef (VF0104)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]`
6	`gi\|238922438\|ref\|YP_002935951.1\| DNA gyrase, A subunit (EUBREC_0006) [Eubacterium rectale ATCC 33656]`	`852`	`VFDB`	`45-766`	`-7.640`	`10`	`VFG001960(gi:15792750) (Cj1432c) sugar transferase [Capsule (VF0323)] [Campylobacter jejuni subsp. jejuni NCTC 11168]`
7	`gi\|238922439\|ref\|YP_002935952.1\| hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit (EUBREC_0007) [Eubacterium rectale ATCC 33656]`	`281`	`VFDB`	`1-235`	`-5.140`	`11`	`VFG012833(gi:56404034) (ipaH1.4) type III secretion system effector ipaH1.4, E3 ubiquitin ligase [T3SS (SS011)] [Shigella flexneri 2a str. 301]`
8	`gi\|238922440\|ref\|YP_002935953.1\| hypothetical protein (EUBREC_0008) [Eubacterium rectale ATCC 33656]`	`47`	`VFDB`	`9-39`	`-3.270`	`16`	`VFG042444(gi:5523844) (afaD-VIII) AfaD-VIII [Afimbrial adhesin, AfaE-VIII (AI015)] [Escherichia coli str. 239 KH 89]`
9	`gi\|238922441\|ref\|YP_002935954.1\| fumarate hydratase subunit B (EUBREC_0009) [Eubacterium rectale ATCC 33656]`	`183`	`VFDB`	`2-159`	`-6.120`	`20`	`VFG000291(gi:15645157) (cagU) type IV secretion system protein Cag11/CagU [Type IV secretion system (VF0060)] [Helicobacter pylori 26695]`
10	`gi\|238922442\|ref\|YP_002935955.1\| putative oxidoreductase (EUBREC_0016) [Eubacterium rectale ATCC 33656]`	`329`	`VFDB`	`2-328`	`-43.400`	`14`	`VFG000038(gi:33591351) (bplA) probable oxidoreductase [LPS (VF0033)] [Bordetella pertussis Tohama I]`
11	`gi\|238922443\|ref\|YP_002935956.1\| transcription repressor of fructose operon FruR (EUBREC_0017) [Eubacterium rectale ATCC 33656]`	`247`	`VFDB`	`1-76`	`-18.600`	`10`	`VFG012327(gi:91210136) (sfaC) S fimbrial switch regulatory protein SfaC [S fimbriae (VF0222)] [Escherichia coli UTI89]`
12	`gi\|238922444\|ref\|YP_002935957.1\| fructose-1-phosphate kinase (EUBREC_0018) [Eubacterium rectale ATCC 33656]`	`305`	`VFDB`	`15-304`	`-17.800`	`17`	`VFG002027(gi:15792474) (hldE) bifunctional D-beta-D-heptose 7-phosphate kinase/D-beta-D-heptose 1-phosphate adenylyltransferase [LOS (VF0326)] [Campylobacter jejuni subsp. jejuni NCTC 11168]`
13	`gi\|238922445\|ref\|YP_002935958.1\| PTS system, fructose-specific, IIABC component (EUBREC_0019) [Eubacterium rectale ATCC 33656]`	`642`	`VFDB`	`314-642`	`-5.550`	`18`	`VFG010882(gi:52841097) (ccmF) cytochrome c heme lyase subunit CcmF [Cytochrome c muturation (ccm) locus (CVF358)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]`
14	`gi\|238922446\|ref\|YP_002935959.1\| chaperone protein DnaK (EUBREC_0020) [Eubacterium rectale ATCC 33656]`	`586`	`VFDB`	`3-350`	`-9.030`	`13`	`VFG010479(gi:52841162) (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI111)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]`
15	`gi\|238922447\|ref\|YP_002935960.1\| hypothetical protein (EUBREC_0021) [Eubacterium rectale ATCC 33656]`	`290`	`VFDB`	`42-149`	`-10.200`	`13`	`VFG002470(gi:53722573) (orgB) Type III secretion system protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]`
16	`gi\|238922448\|ref\|YP_002935961.1\| DNA-binding response regulator (EUBREC_0022) [Eubacterium rectale ATCC 33656]`	`230`	`VFDB`	`1-230`	`-71.600`	`33`	`VFG001386(gi:15607897) (phoP) Possible two component system response transcriptional positive regulator PhoP [PhoP (VF0286)] [Mycobacterium tuberculosis H37Rv]`
17	`gi\|238922449\|ref\|YP_002935962.1\|(removed signalp:1-29) hypothetical protein (EUBREC_0023) [Eubacterium rectale ATCC 33656]`	`428`	`VFDB`	`60-426`	`-10.900`	`11`	`VFG002192(gi:29376363) (fsrC) histidine kinase, putative [Fsr (VF0360)] [Enterococcus faecalis V583]`
				`125-423`	`-35.800`	`19`	`VFG009810(gi:15607898) (phoR) Possible two component system response sensor kinase membrane associated PhoR [PhoP/R (CVF331)] [Mycobacterium tuberculosis H37Rv]`
18	`gi\|238922450\|ref\|YP_002935963.1\| hypothetical protein (EUBREC_0024) [Eubacterium rectale ATCC 33656]`	`761`	`VFDB`	`10-737`	`-5.440`	`10`	`VFG000165(gi:15599421) (pchF) pyochelin synthetase PchF [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]`
19	`gi\|238922451\|ref\|YP_002935964.1\| hypothetical protein (EUBREC_0025) [Eubacterium rectale ATCC 33656]`	`437`	`VFDB`	`60-368`	`-6.700`	`8`	`VFG000019(gi:33594646) (ptlD) Ptl Type IV secretion system VirB6 homolog protein PtlA [Ptx (VF0026)] [Bordetella pertussis Tohama I]`
20	`gi\|238922452\|ref\|YP_002935965.1\| hypothetical protein (EUBREC_0026) [Eubacterium rectale ATCC 33656]`	`877`	`VFDB`	`23-862`	`-19.500`	`7`	`VFG000337(gi:16272928) (iga1) immunoglobin A1 protease [IgA1 protease (VF0045)] [Haemophilus influenzae Rd KW20]`
				`564-876`	`-42.900`	`16`	`VFG002380(gi:15611004) (eccA1) ESX-1 type VII secretion system AAA+ ATPase EccA1 [ESX-1 (VF0315)] [Mycobacterium tuberculosis H37Rv]`