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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15644635|ref|NP_206803.1| transcription antitermination protein NusB (HP0001) [Helicobacter pylori 26695] 138 COG1018 2-135 -71.700 27  [K] COG0781 Transcription termination factor
CSGID 42-127 -6.110 15  IDP91467 putative type III secretion system lipoprotein EprK [Vibrio parahaemolyticus RIMD 2210633] VPA1367 [Vibrio parahaemolyticus RIMD 2210633]
H.sapiens 26-134 -19.300 sp|P46087|NOP2_HUMAN Putative ribosomal RNA methyltransferase NOP2 OS=Homo sapiens GN=NOP2 PE=1 SV=2 (Range: 151-450)
HGM_OVER 4-137 -5.930 HGC00422 gi|163631722|dbj|BABG01004545.1|2.0 TMP00397;
NEW_HUMAN_DOMAINS 76-134 -7.750 11  sp|A4D997|CI102_HUMAN Uncharacterized protein C9orf102 OS=Homo sapiens GN=C9orf102 PE=1 SV=3 (Range: 175-256)
PDB1018 3-136 -72.700 29  1tzt_A mol:protein length:142 N utilization substance protein B homolog
PfamA32U 5-130 -71.900 24  PF01029.18; NUSB_DEHM1/6-132; NusB family
SCOP207 3-136 -73.200 29  d1tzva_ a.79.1.1 (A:) Antitermination factor NusB {Thermotoga maritima [TaxId: 2336]}
VFDB 2-135 -71.700 27  [K] COG0781 Transcription termination factor
2 gi|15644636|ref|NP_206804.1| 6,7-dimethyl-8-ribityllumazine synthase (HP0002) [Helicobacter pylori 26695] 156 COG1018 10-156 -81.600 50  [H] COG0054 Riboflavin synthase beta-chain
CSGID 1-154 -85.400 67  IDP90519 gene: ribH; riboflavin synthase subunit beta [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0383c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
H.sapiens 21-119 -8.900 18  sp|P17066|HSP76_HUMAN Heat shock 70 kDa protein 6 OS=Homo sapiens GN=HSPA6 PE=1 SV=2 (Range: 301-600)
HGM_OVER 12-143 -4.540 10  PB035451 Q3Z7G7_DEHE1/1-135 PB035451; Pfam-B_35451;
NEW_HUMAN_DOMAINS 75-123 -6.130 12  sp|Q13200|PSMD2_HUMAN 26S proteasome non-ATPase regulatory subunit 2 OS=Homo sapiens GN=PSMD2 PE=1 SV=3 (Range: 642-724)
PDB1018 1-155 -83.600 48  1rvv_A mol:protein length:154 RIBOFLAVIN SYNTHASE
PfamA32U 13-152 -81.300 50  PF00885.19; R7PPI3_9FIRM/12-151; 6,7-dimethyl-8-ribityllumazine synthase
SCOP207 1-155 -83.500 50  d1nqua_ c.16.1.1 (A:) Lumazine synthase {Aquifex aeolicus [TaxId: 63363]}
VFDB 10-156 -81.600 50  [H] COG0054 Riboflavin synthase beta-chain
3 gi|15644637|ref|NP_206805.1| 2-dehydro-3-deoxyphosphooctonate aldolase (HP0003) [Helicobacter pylori 26695] 276 COG1018 1-276 -83.900 41  [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase
CSGID 9-276 -99.800 62  IDP90656 gene: kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0384c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
H.sapiens 2-276 -16.000 12  sp|Q9NR45|SIAS_HUMAN Sialic acid synthase OS=Homo sapiens GN=NANS PE=1 SV=2
HGM_OVER 14-113 -3.470 HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
NEW_HUMAN_DOMAINS 232-276 -6.380 17  sp|Q6ZN90|PRAML_HUMAN Leucine-rich repeat-containing protein PRAME-like OS=Homo sapiens GN=PRAMEL PE=2 SV=2 (Range: 451-520)
PDB1018 1-276 -115.000 100  4z1a_A mol:protein length:276 2-dehydro-3-deoxyphosphooctonate aldolase
PfamA32U 1-270 -64.200 12  PF00793.20; AROG_HAEIN/32-347; DAHP synthetase I family
SCOP207 9-276 -84.000 51  d3e0ia_ c.1.10.4 (A:) 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) {Aquifex aeolicus [TaxId: 63363]}
VFDB 1-276 -83.900 41  [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase
4 gi|15644638|ref|NP_206806.1| carbonic anhydrase (icfA) (HP0004) [Helicobacter pylori 26695] 221 COG1018 2-219 -87.300 23  [P] KOG1578 Predicted carbonic anhydrase involved in protection against oxidative damage
CSGID 2-220 -85.900 25  IDP00909 gene: yadF; carbonic anhydrase STM0171 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
H.sapiens 25-102 -8.440 20  sp|P01215|GLHA_HUMAN(removed signalp:1-24) Glycoprotein hormones alpha chain OS=Homo sapiens GN=CGA PE=1 SV=1
HGM_OVER 77-126 -4.040 12  HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
NEW_HUMAN_DOMAINS 36-87 -5.990 16  sp|A6NKB5|PCX2_HUMAN Pecanex-like protein 2 OS=Homo sapiens GN=PCNXL2 PE=1 SV=3 (Range: 315-399)
PDB1018 2-209 -90.100 28  1ekj_A mol:protein length:221 BETA-CARBONIC ANHYDRASE
PfamA32U 33-195 -83.000 27  PF00484.19; Q28W87_JANSC/42-203; Carbonic anhydrase
SCOP207 2-209 -91.900 28  d1ekja_ c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum sativum) [TaxId: 3888]}
VFDB 2-219 -87.300 23  [P] KOG1578 Predicted carbonic anhydrase involved in protection against oxidative damage
5 gi|15644639|ref|NP_206807.1| orotidine 5'-phosphate decarboxylase (HP0005) [Helicobacter pylori 26695] 227 COG1018 2-227 -92.500 33  [F] COG0284 Orotidine-5`-phosphate decarboxylase
CSGID 2-227 -92.500 33  IDP90525 orotidine 5`-phosphate decarboxylase [Vibrio cholerae O1 biovar eltor str. N16961] VC1911 [Vibrio cholerae O1 biovar El Tor str. N16961]
H.sapiens 2-226 -44.700 19  sp|P11172|PYR5_HUMAN Uridine 5`-monophosphate synthase OS=Homo sapiens GN=UMPS PE=1 SV=1
HGM_OVER 176-226 -1.960 PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete)
NEW_HUMAN_DOMAINS 4-65 -5.200 10  sp|Q9H2P0|ADNP_HUMAN Activity-dependent neuroprotector homeobox protein OS=Homo sapiens GN=ADNP PE=1 SV=1 (Range: 1-73)
PDB1018 2-227 -92.800 33  2yyt_A mol:protein length:246 Orotidine 5`-phosphate decarboxylase
PfamA32U 2-223 -91.000 33  PF00215.24; PYRF_STRP1/5-224; Orotidine 5`-phosphate decarboxylase / HUMPS family
SCOP207 1-227 -98.500 52  d3ru6a1 c.1.2.0 (A:1-227) automated matches {Campylobacter jejuni [TaxId: 192222]}
VFDB 2-227 -92.500 33  [F] COG0284 Orotidine-5`-phosphate decarboxylase
6 gi|15644640|ref|NP_206808.1| pantoate--beta-alanine ligase (HP0006) [Helicobacter pylori 26695] 276 COG1018 1-276 -117.000 39  [H] COG0414 Panthothenate synthetase
CSGID 1-276 -124.000 100  IDP06221 gene: panC; pantoate--beta-alanine ligase [Helicobacter pylori 26695] NP_206808 [Helicobacter pylori 26695]
H.sapiens 1-229 -6.810 11  sp|Q9BVQ7|SPA5L_HUMAN Spermatogenesis-associated protein 5-like protein 1 OS=Homo sapiens GN=SPATA5L1 PE=1 SV=2 (Range: 151-450)
HGM_OVER 8-81 -2.790 23  PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]
NEW_HUMAN_DOMAINS 72-195 -5.220 17  sp|Q9H9T3|ELP3_HUMAN Elongator complex protein 3 OS=Homo sapiens GN=ELP3 PE=1 SV=2 (Range: 294-441)
PDB1018 1-276 -117.000 41  1ufv_A mol:protein length:276 Pantoate-beta-alanine ligase
PfamA32U 3-275 -115.000 38  PF02569.15; L0F3M1_DESDL/2-278; Pantoate-beta-alanine ligase
SCOP207 1-276 -115.000 40  d3mxta1 c.26.1.0 (A:1-282) automated matches {Campylobacter jejuni [TaxId: 192222]}
VFDB 1-276 -117.000 39  [H] COG0414 Panthothenate synthetase
7 gi|15646197|ref|NP_206811.1| outer membrane protein (HP0009) [Helicobacter pylori 26695] 634 COG1018 3-467 -9.730 [TU] KOG3895 Synaptic vesicle protein Synapsin
CSGID 2-483 -11.500 IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]
351-634 -42.400 15  IDP06043 hypothetical protein jhp0370 [Helicobacter pylori J99] NP_223089 [Helicobacter pylori J99]
H.sapiens 466-576 -6.930 15  sp|Q1KMD3|HNRL2_HUMAN Heterogeneous nuclear ribonucleoprotein U-like protein 2 OS=Homo sapiens GN=HNRNPUL2 PE=1 SV=1 (Range: 301-600)
HGM_OVER 434-606 -6.660 14  PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;
NEW_HUMAN_DOMAINS 470-498 -5.650 32  sp|Q5U5Z8|CBPC2_HUMAN Cytosolic carboxypeptidase 2 OS=Homo sapiens GN=AGBL2 PE=2 SV=2 (Range: 1-102)
PDB1018 1-478 -30.700 39  4zh0_A mol:protein length:543 Outer membrane protein-adhesin
434-634 -13.300 13  2lhf_A mol:protein length:179 Outer membrane protein H1
PfamA32U 8-268 -20.300 49  PF18304.1; O25086_HELPY/46-369; SabA N-terminal extracellular adhesion domain
413-634 -9.640 11  PF05736.11; PORF_PSEFL/1-186; OprF membrane domain
465-634 -59.700 38  PF01856.17; O26005_HELPY/59-248; Helicobacter outer membrane protein
SCOP207 448-634 -10.800 12  d3qraa_ f.4.1.0 (A:) automated matches {Yersinia pestis [TaxId: 632]}
VFDB 3-467 -9.730 [TU] KOG3895 Synaptic vesicle protein Synapsin
8 gi|15644643|ref|NP_206812.1| chaperonin GroEL (HP0010) [Helicobacter pylori 26695] 546 COG1018 1-537 -144.000 51  [O] KOG0356 Mitochondrial chaperonin, Cpn60/Hsp60p
CSGID 1-527 -132.000 57  IDP01497 gene: groEL; chaperonin GroEL VCA0820 [Vibrio cholerae O1 biovar El Tor str. N16961]
H.sapiens 1-546 -130.000 53  sp|P10809|CH60_HUMAN 60 kDa heat shock protein, mitochondrial OS=Homo sapiens GN=HSPD1 PE=1 SV=2
HGM_OVER 77-177 -3.040 14  HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;
NEW_HUMAN_DOMAINS 416-526 -7.900 10  sp|Q6ZW61|BBS12_HUMAN Bardet-Biedl syndrome 12 protein OS=Homo sapiens GN=BBS12 PE=1 SV=2 (Range: 565-710)
PDB1018 1-546 -134.000 61  1iok_A mol:protein length:545 CHAPERONIN 60
PfamA32U 22-522 -110.000 16  PF00118.24; TCPB_DICDI/34-524; TCP-1/cpn60 chaperonin family
SCOP207 2-230 -58.100 41  d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]}
2-521 -47.500 23  d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}
VFDB 1-537 -144.000 51  [O] KOG0356 Mitochondrial chaperonin, Cpn60/Hsp60p
9 gi|15644644|ref|NP_206813.1| co-chaperonin GroES (HP0011) [Helicobacter pylori 26695] 118 COG1018 1-90 -46.200 40  [O] COG0234 Co-chaperonin GroES (HSP10)
CSGID 1-91 -49.400 47  IDP01690 gene: groES; chaperonin, 10 kDa [Coxiella burnetii RSA 493] CBU_1719 [Coxiella burnetii RSA 493]
H.sapiens 2-91 -48.200 37  sp|P61604|CH10_HUMAN 10 kDa heat shock protein, mitochondrial OS=Homo sapiens GN=HSPE1 PE=1 SV=2
HGM_OVER 70-106 -3.810 13  PB048420 Q64S71_BACFR/1-165 PB048420; Pfam-B_48420;
NEW_HUMAN_DOMAINS 6-94 -6.550 18  sp|Q9C0C9|UBE2O_HUMAN Ubiquitin-conjugating enzyme E2 O OS=Homo sapiens GN=UBE2O PE=1 SV=3 (Range: 116-311)
PDB1018 1-90 -49.000 47  4v4o_O mol:protein length:100 cpn10(GroES)
PfamA32U 3-87 -45.200 35  PF00166.21; B7PEU9_IXOSC/8-98; Chaperonin 10 Kd subunit
SCOP207 2-91 -47.900 37  d4pj11_ b.35.1.0 (1:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
VFDB 1-90 -46.200 40  [O] COG0234 Co-chaperonin GroES (HSP10)
10 gi|15644645|ref|NP_206814.1| DNA primase (HP0012) [Helicobacter pylori 26695] 559 COG1018 1-558 -116.000 26  [L] COG0358 DNA primase (bacterial type)
CSGID 1-555 -117.000 24  IDP05233 gene: dnaG; DNA primase [Listeria monocytogenes EGD-e] lmo1455 [Listeria monocytogenes EGD-e]
H.sapiens 11-305 -34.100 16  sp|Q96RR1|PEO1_HUMAN(removed signalp:1-19) Twinkle protein, mitochondrial OS=Homo sapiens GN=PEO1 PE=1 SV=1 (Range: 1-300)
124-413 -23.000 13  sp|Q96RR1|PEO1_HUMAN(removed signalp:1-19) Twinkle protein, mitochondrial OS=Homo sapiens GN=PEO1 PE=1 SV=1 (Range: 151-450)
HGM_OVER 7-121 -3.180 13  HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
NEW_HUMAN_DOMAINS 11-65 -8.940 20  sp|Q96RR1|PEO1_HUMAN Twinkle protein, mitochondrial OS=Homo sapiens GN=PEO1 PE=1 SV=1 (Range: 1-120)
PDB1018 3-415 -98.900 31  2au3_A mol:protein length:407 DNA primase
94-466 -79.900 23  5vaz_A mol:protein length:389 DNA primase
400-559 -10.700 93  4ehs_A mol:protein length:155 DNA primase
PfamA32U 3-98 -53.700 45  PF01807.20; DNAG_PSEPK/6-101; CHC2 zinc finger
117-239 -50.000 35  PF08275.11; Q8F416_LEPIN/119-248; DNA primase catalytic core, N-terminal domain
249-334 -43.100 45  PF13155.6; Q8EPY5_OCEIH/263-348; Toprim-like
SCOP207 1-100 -53.700 40  d1d0qa_ g.41.3.2 (A:) Zinc-binding domain of DNA primase {Bacillus stearothermophilus [TaxId: 1422]}
106-411 -80.500 29  d1dd9a_ e.13.1.1 (A:) DNA primase DnaG catalytic core {Escherichia coli [TaxId: 562]}
VFDB 1-558 -116.000 26  [L] COG0358 DNA primase (bacterial type)
11 gi|15644646|ref|NP_206815.1| hypothetical protein (HP0013) [Helicobacter pylori 26695] 350 COG1018 2-346 -68.800 13  [J] COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain
CSGID 2-346 -69.400 13  IDP90692 gene: trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis CO92] YPO1638 [Yersinia pestis CO92]
H.sapiens 2-346 -66.900 13  sp|O75648|MTU1_HUMAN Mitochondrial tRNA-specific 2-thiouridylase 1 OS=Homo sapiens GN=TRMU PE=1 SV=2
HGM_OVER 1-116 -2.470 10  PB040621 Q8A865_BACTN/1-132 PB040621; Pfam-B_40621;
NEW_HUMAN_DOMAINS 88-228 -5.470 11  sp|Q6UXV1|IZUM2_HUMAN Izumo sperm-egg fusion protein 2 OS=Homo sapiens GN=IZUMO2 PE=1 SV=1 (Range: 21-186)
PDB1018 2-346 -69.200 14  2hma_A mol:protein length:376 Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
PfamA32U 4-346 -66.600 13  PF03054.16; MNMA_CHLTR/3-350; tRNA methyl transferase
SCOP207 2-235 -36.500 14  d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]}
VFDB 2-346 -68.800 13  [J] COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain
12 gi|15644647|ref|NP_206816.1| hypothetical protein (HP0014) [Helicobacter pylori 26695] 275 COG1018 7-275 -11.700 13  [R] COG3970 Fumarylacetoacetate (FAA) hydrolase family protein
CSGID 7-275 -12.800 13  IDP04721 conserved hypothetical protein [Yersinia pestis CO92] YPO1289 [Yersinia pestis CO92]
H.sapiens 7-239 -11.700 14  sp|Q6P587|FAHD1_HUMAN Fumarylacetoacetate hydrolase domain-containing protein 1 OS=Homo sapiens GN=FAHD1 PE=1 SV=2
HGM_OVER 4-129 -2.470 HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;
NEW_HUMAN_DOMAINS 86-200 -5.130 12  sp|Q3MIX3|ADCK5_HUMAN Uncharacterized aarF domain-containing protein kinase 5 OS=Homo sapiens GN=ADCK5 PE=2 SV=2 (Range: 463-580)
PDB1018 7-239 -12.400 15  4maq_A mol:protein length:240 Putative fumarylpyruvate hydrolase
PfamA32U 8-241 -11.500 12  PF11010.8; A4Z3D7_BRASO/29-221; Protein of unknown function (DUF2848 topsan)
SCOP207 7-239 -11.800 17  d3s52a_ d.177.1.1 (A:) automated matches {Yersinia pestis [TaxId: 214092]}
VFDB 7-275 -11.700 13  [R] COG3970 Fumarylacetoacetate (FAA) hydrolase family protein
13 gi|15644648|ref|NP_206817.1| hypothetical protein (HP0015) [Helicobacter pylori 26695] 93 COG1018 8-91 -12.000 17  [U] COG3838 Type IV secretory pathway, VirB2 components (pilins)
CSGID 14-63 -5.410 14  IDP91727 gene: BCL2L11; bcl-2-like protein 11 isoform 1 [Homo sapiens] NP_619527 [Homo sapiens]
H.sapiens 1-93 -9.410 15  sp|P78316|NOP14_HUMAN Nucleolar protein 14 OS=Homo sapiens GN=NOP14 PE=1 SV=3 (Range: 301-600)
HGM_OVER 20-93 -5.320 12  PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]
NEW_HUMAN_DOMAINS 29-84 -6.780 10  sp|C9JH25|PRRT4_HUMAN Proline-rich transmembrane protein 4 OS=Homo sapiens GN=PRRT4 PE=2 SV=1 (Range: 535-696)
PDB1018 25-65 -7.330 22  2x2z_A mol:protein length:456 APICAL MEMBRANE ANTIGEN 1, PUTATIVE
PfamA32U 21-89 -11.700 18  PF04956.13; Q1M9P0_RHIL3/1-100; TrbC/VIRB2 family
SCOP207 22-70 -5.270 d2pbea2 d.218.1.13 (A:2-135) Aminoglycoside 6-adenylyltransferase AadK {Bacillus subtilis [TaxId: 1423]}
VFDB 8-91 -12.000 17  [U] COG3838 Type IV secretory pathway, VirB2 components (pilins)
14 gi|15644649|ref|NP_206818.1| hypothetical protein (HP0016) [Helicobacter pylori 26695] 87 COG1018 11-86 -10.500 [U] COG3702 Type IV secretory pathway, VirB3 components
CSGID 8-81 -6.600 19  IDP95161 type IV secretory pathway VirB3-4 component [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002920281 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
H.sapiens 4-74 -8.720 14  sp|Q9Y3Q4|HCN4_HUMAN Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 OS=Homo sapiens GN=HCN4 PE=1 SV=1 (Range: 1-300)
HGM_OVER 7-63 -3.850 12  PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;
NEW_HUMAN_DOMAINS 45-64 -5.880 35  sp|O60725|ICMT_HUMAN Protein-S-isoprenylcysteine O-methyltransferase OS=Homo sapiens GN=ICMT PE=1 SV=1 (Range: 89-163)
PDB1018 15-57 -5.480 2xzb_B mol:protein length:290 POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA
PfamA32U 64-84 -7.350 23  PF16636.5; G1M1X1_AILME/1871-1951; Unstructured region on APC between APC_crr regions 5 and 6
SCOP207 1-28 -5.160 17  d1fjgn_ g.39.1.7 (N:) Ribosomal protein S14 {Thermus thermophilus [TaxId: 274]}
VFDB 11-86 -10.500 [U] COG3702 Type IV secretory pathway, VirB3 components
15 gi|15644650|ref|NP_206819.1| virB4 homolog (virB4) (HP0017) [Helicobacter pylori 26695] 787 COG1018 257-786 -80.600 15  [U] COG3451 Type IV secretory pathway, VirB4 components
CSGID 1-787 -140.000 17  IDP95161 type IV secretory pathway VirB3-4 component [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002920281 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
H.sapiens 434-715 -10.300 15  sp|Q9UNQ0|ABCG2_HUMAN ATP-binding cassette sub-family G member 2 OS=Homo sapiens GN=ABCG2 PE=1 SV=3 (Range: 1-300)
HGM_OVER 11-201 -14.000 10  HGC00816 gi|163609134|dbj|BABG01026932.1|1.0 TMP01075;
NEW_HUMAN_DOMAINS 443-465 -7.050 13  sp|Q6P2S7|GNN_HUMAN Tetratricopeptide repeat protein GNN OS=Homo sapiens GN=GNN PE=2 SV=3 (Range: 217-335)
PDB1018 153-707 -12.900 11  4nh0_A mol:protein length:1147 Cell divisionFtsK/SpoIIIE
404-764 -45.900 14  4ag5_A mol:protein length:392 TYPE IV SECRETORY PATHWAY VIRB4 COMPONENTS-LIKE PROTEIN
PfamA32U 25-251 -17.100 10  PF11130.8; G0A5A8_METMM/40-307; F pilus assembly Type-IV secretion system for plasmid transfer
175-375 -48.800 15  PF03135.14; Q9ZE45_RICPR/194-399; CagE, TrbE, VirB family, component of type IV transporter system
416-732 -41.300 11  PF12846.7; Q833R2_ENTFA/443-804; AAA-like domain
436-772 -19.400 13  PF10412.9; A4XE63_NOVAD/225-611; Type IV secretion-system coupling protein DNA-binding domain
SCOP207 436-787 -21.400 14  d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}
VFDB 257-786 -80.600 15  [U] COG3451 Type IV secretory pathway, VirB4 components
16 gi|15644651|ref|NP_206820.1| hypothetical protein (HP0018) [Helicobacter pylori 26695] 469 COG1018 1-469 -162.000 98  [S] COG3014 Uncharacterized protein conserved in bacteria
CSGID 1-188 -24.100 12  IDP05313 putative lipoprotein [Bacillus anthracis str. Ames] BA_1061 [Bacillus anthracis str. Ames]
1-241 -18.600 11  IDP01392 lipoprotein NlpI VC0648 [Vibrio cholerae O1 biovar El Tor str. N16961]
15-378 -13.200 IDP90308 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_700 [Chlamydia trachomatis D/UW-3/CX]
34-348 -13.600 11  IDP04095 hypothetical protein [Yersinia pestis CO92] YPO1987 [Yersinia pestis CO92]
H.sapiens 20-268 -21.800 10  sp|Q9H9A5|CNOTA_HUMAN CCR4-NOT transcription complex subunit 10 OS=Homo sapiens GN=CNOT10 PE=1 SV=1 (Range: 1-300)
20-327 -15.700 10  sp|P50542|PEX5_HUMAN Peroxisomal targeting signal 1 receptor OS=Homo sapiens GN=PEX5 PE=1 SV=3 (Range: 301-600)
HGM_OVER 1-113 -7.860 10  PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)
NEW_HUMAN_DOMAINS 34-152 -12.000 sp|Q14674|ESPL1_HUMAN Separin OS=Homo sapiens GN=ESPL1 PE=1 SV=3 (Range: 717-845)
PDB1018 20-394 -15.600 3r9a_B mol:protein length:328 Peroxisomal targeting signal 1 receptor
21-254 -19.100 12  4r7s_A mol:protein length:257 Tetratricopeptide repeat protein
27-160 -20.100 10  2nc9_A mol:protein length:131 Stress-induced-phosphoprotein 1
36-341 -16.700 3cvq_A mol:protein length:327 Peroxisome targeting signal 1 receptor PEX5
PfamA32U 1-416 -11.200 PF10345.9; Q6CDL4_YARLI/63-642; Cohesin loading factor
20-160 -17.600 11  PF12968.7; Q8KAL8_CHLTE/2-144; Domain of Unknown Function (DUF3856 topsan)
34-396 -15.700 11  PF12569.8; A7S752_NEMVE/188-686; NMDA receptor-regulated protein 1
SCOP207 26-392 -15.500 d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase, OGT {Human (Homo sapiens) [TaxId: 9606]}
27-160 -19.200 10  d3eska1 a.118.8.1 (A:223-349) Hop {Human (Homo sapiens) [TaxId: 9606]}
35-258 -17.400 d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}
VFDB 1-469 -162.000 98  [S] COG3014 Uncharacterized protein conserved in bacteria
17 gi|15644652|ref|NP_206821.1| chemotaxis protein (cheV) (HP0019) [Helicobacter pylori 26695] 321 COG1018 1-198 -35.000 23  [NT] COG0835 Chemotaxis signal transduction protein
196-321 -33.800 20  [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
CSGID 1-321 -80.300 27  IDP00997 putative chemotaxis signal transduction protein STM2314 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
H.sapiens 198-319 -26.100 11  sp|O95263|PDE8B_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8B OS=Homo sapiens GN=PDE8B PE=1 SV=2 (Range: 1-300)
HGM_OVER 195-287 -3.890 16  PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]
NEW_HUMAN_DOMAINS 179-319 -28.400 12  sp|Q9NX45|SOLH2_HUMAN Spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 2 OS=Homo sapiens GN=SOHLH2 PE=2 SV=2 (Range: 1-196)
PDB1018 195-318 -48.800 22  4h60_A mol:protein length:120 Chemotaxis protein CheY
PfamA32U 25-173 -20.900 12  PF01584.19; Q8XQ78_RALSO/559-691; CheW-like domain
199-318 -38.300 20  PF00072.24; RSSB_ECOLI/10-121; Response regulator receiver domain
SCOP207 197-318 -48.200 22  d4h60a1 c.23.1.0 (A:1-119) automated matches {Vibrio cholerae [TaxId: 345073]}
VFDB 1-198 -35.000 23  [NT] COG0835 Chemotaxis signal transduction protein
196-321 -33.800 20  [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
18 gi|15644653|ref|NP_206822.1| carboxynorspermidine decarboxylase (nspC) (HP0020) [Helicobacter pylori 26695] 405 COG1018 2-405 -80.100 13  [E] COG0019 Diaminopimelate decarboxylase
CSGID 2-405 -84.700 15  IDP00434 gene: lysA; diaminopimelate decarboxylase YPO0796 [Yersinia pestis CO92]
H.sapiens 2-405 -72.500 14  sp|O14977|AZIN1_HUMAN Antizyme inhibitor 1 OS=Homo sapiens GN=AZIN1 PE=1 SV=2
HGM_OVER 83-216 -2.860 PB002534 Q8H9W1_9CAUD/1-397 PB002534; Pfam-B_2534;
NEW_HUMAN_DOMAINS 158-271 -4.570 16  sp|A6NFQ2|F115C_HUMAN Protein FAM115C OS=Homo sapiens GN=FAM115C PE=2 SV=2 (Range: 296-542)
PDB1018 2-405 -94.700 45  3n29_A mol:protein length:418 Carboxynorspermidine decarboxylase
PfamA32U 11-364 -69.700 17  PF00278.22; Q088K9_SHEFN/29-368; Pyridoxal-dependent decarboxylase, C-terminal sheet domain
SCOP207 15-265 -52.700 16  d1twia2 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase LysA {Methanococcus jannaschii [TaxId: 2190]}
249-405 -51.300 18  d1twia1 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decarboxylase LysA {Methanococcus jannaschii [TaxId: 2190]}
VFDB 2-405 -80.100 13  [E] COG0019 Diaminopimelate decarboxylase
19 gi|15644654|ref|NP_206823.1| lipid A 1-phosphatase (HP0021) [Helicobacter pylori 26695] 190 COG1018 30-189 -49.600 14  [S] KOG4268 Uncharacterized conserved protein containing PAP2 domain
CSGID 25-189 -64.400 25  IDP06119 hypothetical protein jhp1487 [Helicobacter pylori J99] NP_224205 [Helicobacter pylori J99]
H.sapiens 1-190 -35.600 13  sp|Q32ZL2|LPPR5_HUMAN(removed signalp:1-27) Lipid phosphate phosphatase-related protein type 5 OS=Homo sapiens GN=LPPR5 PE=2 SV=2
30-189 -48.900 16  sp|Q8IY26|PPAC2_HUMAN Presqualene diphosphate phosphatase OS=Homo sapiens GN=PPAPDC2 PE=1 SV=3
HGM_OVER 40-190 -3.640 11  PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;
NEW_HUMAN_DOMAINS 120-169 -9.530 tr|E7ENG5|E7ENG5_HUMAN Uncharacterized protein OS=Homo sapiens GN=G6PC PE=4 SV=1 (Range: 83-178)
PDB1018 13-189 -44.800 14  4px7_A mol:protein length:262 Phosphatidylglycerophosphatase
PfamA32U 44-183 -24.600 11  PF14378.6; R7Y200_9ACTN/124-318; PAP2 superfamily
78-190 -36.600 14  PF01569.21; A7EIU4_SCLS1/134-294; PAP2 superfamily
SCOP207 55-186 -37.900 15  d1d2ta_ a.111.1.1 (A:) Bacterial acid phosphatase {Escherichia blattae [TaxId: 563]}
VFDB 30-189 -49.600 14  [S] KOG4268 Uncharacterized conserved protein containing PAP2 domain
20 gi|15644655|ref|NP_206824.1| lipid A phosphoethanolamine transferase (HP0022) [Helicobacter pylori 26695] 521 COG1018 3-521 -96.800 25  [R] COG2194 Predicted membrane-associated, metal-dependent hydrolase
CSGID 184-517 -23.200 12  IDP02230 putative sulfatase [Yersinia pestis CO92] YPO0829 [Yersinia pestis CO92]
H.sapiens 213-517 -24.800 13  sp|Q6UWY0|ARSK_HUMAN(removed signalp:1-22) Arylsulfatase K OS=Homo sapiens GN=ARSK PE=2 SV=1
HGM_OVER 224-427 -3.370 10  PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;
NEW_HUMAN_DOMAINS 404-476 -4.430 12  sp|Q6UWP7|LCLT1_HUMAN Lysocardiolipin acyltransferase 1 OS=Homo sapiens GN=LCLAT1 PE=1 SV=1 (Range: 253-360)
PDB1018 4-521 -96.100 24  5fgn_A mol:protein length:550 lipooligosaccharide phosphoethanolamine transferase A
PfamA32U 50-500 -25.500 PF11658.8; D8MLA0_ERWBE/20-540; Cellulose biosynthesis protein BcsG
SCOP207 218-517 -19.600 13  d1p49a_ c.76.1.2 (A:) Steryl-sulfatase {Human (Homo sapiens) [TaxId: 9606]}
VFDB 3-521 -96.800 25  [R] COG2194 Predicted membrane-associated, metal-dependent hydrolase


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lukasz Jaroszewski, Zhanwen Li, S. Sri Krishna, Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik, Exploration of Uncharted Regions of the Protein Universe. Plos Biology. 2009 Sep. 7(9):e1000205