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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 1653next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15644635|ref|NP_206803.1| transcription antitermination protein NusB (HP0001) [Helicobacter pylori 26695] 138 CSGID 42-127 -6.110 15  IDP91467 putative type III secretion system lipoprotein EprK [Vibrio parahaemolyticus RIMD 2210633] VPA1367 [Vibrio parahaemolyticus RIMD 2210633]
2 gi|15644636|ref|NP_206804.1| 6,7-dimethyl-8-ribityllumazine synthase (HP0002) [Helicobacter pylori 26695] 156 CSGID 1-154 -85.400 67  IDP90519 gene: ribH; riboflavin synthase subunit beta [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0383c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
3 gi|15644637|ref|NP_206805.1| 2-dehydro-3-deoxyphosphooctonate aldolase (HP0003) [Helicobacter pylori 26695] 276 CSGID 9-276 -99.800 62  IDP90656 gene: kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0384c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
4 gi|15644638|ref|NP_206806.1| carbonic anhydrase (icfA) (HP0004) [Helicobacter pylori 26695] 221 CSGID 2-220 -85.900 25  IDP00909 gene: yadF; carbonic anhydrase STM0171 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
5 gi|15644639|ref|NP_206807.1| orotidine 5'-phosphate decarboxylase (HP0005) [Helicobacter pylori 26695] 227 CSGID 2-227 -92.500 33  IDP90525 orotidine 5`-phosphate decarboxylase [Vibrio cholerae O1 biovar eltor str. N16961] VC1911 [Vibrio cholerae O1 biovar El Tor str. N16961]
6 gi|15644640|ref|NP_206808.1| pantoate--beta-alanine ligase (HP0006) [Helicobacter pylori 26695] 276 CSGID 1-276 -124.000 100  IDP06221 gene: panC; pantoate--beta-alanine ligase [Helicobacter pylori 26695] NP_206808 [Helicobacter pylori 26695]
7 gi|15646197|ref|NP_206811.1| outer membrane protein (HP0009) [Helicobacter pylori 26695] 634 CSGID 2-483 -11.500 IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]
351-634 -42.400 15  IDP06043 hypothetical protein jhp0370 [Helicobacter pylori J99] NP_223089 [Helicobacter pylori J99]
8 gi|15644643|ref|NP_206812.1| chaperonin GroEL (HP0010) [Helicobacter pylori 26695] 546 CSGID 1-527 -132.000 57  IDP01497 gene: groEL; chaperonin GroEL VCA0820 [Vibrio cholerae O1 biovar El Tor str. N16961]
9 gi|15644644|ref|NP_206813.1| co-chaperonin GroES (HP0011) [Helicobacter pylori 26695] 118 CSGID 1-91 -49.400 47  IDP01690 gene: groES; chaperonin, 10 kDa [Coxiella burnetii RSA 493] CBU_1719 [Coxiella burnetii RSA 493]
10 gi|15644645|ref|NP_206814.1| DNA primase (HP0012) [Helicobacter pylori 26695] 559 CSGID 1-555 -117.000 24  IDP05233 gene: dnaG; DNA primase [Listeria monocytogenes EGD-e] lmo1455 [Listeria monocytogenes EGD-e]
11 gi|15644646|ref|NP_206815.1| hypothetical protein (HP0013) [Helicobacter pylori 26695] 350 CSGID 2-346 -69.400 13  IDP90692 gene: trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis CO92] YPO1638 [Yersinia pestis CO92]
12 gi|15644647|ref|NP_206816.1| hypothetical protein (HP0014) [Helicobacter pylori 26695] 275 CSGID 7-275 -12.800 13  IDP04721 conserved hypothetical protein [Yersinia pestis CO92] YPO1289 [Yersinia pestis CO92]
13 gi|15644648|ref|NP_206817.1| hypothetical protein (HP0015) [Helicobacter pylori 26695] 93 CSGID 14-63 -5.410 14  IDP91727 gene: BCL2L11; bcl-2-like protein 11 isoform 1 [Homo sapiens] NP_619527 [Homo sapiens]
14 gi|15644649|ref|NP_206818.1| hypothetical protein (HP0016) [Helicobacter pylori 26695] 87 CSGID 8-81 -6.600 19  IDP95161 type IV secretory pathway VirB3-4 component [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002920281 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
15 gi|15644650|ref|NP_206819.1| virB4 homolog (virB4) (HP0017) [Helicobacter pylori 26695] 787 CSGID 1-787 -140.000 17  IDP95161 type IV secretory pathway VirB3-4 component [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002920281 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
16 gi|15644651|ref|NP_206820.1| hypothetical protein (HP0018) [Helicobacter pylori 26695] 469 CSGID 1-188 -24.100 12  IDP05313 putative lipoprotein [Bacillus anthracis str. Ames] BA_1061 [Bacillus anthracis str. Ames]
1-241 -18.600 11  IDP01392 lipoprotein NlpI VC0648 [Vibrio cholerae O1 biovar El Tor str. N16961]
15-378 -13.200 IDP90308 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_700 [Chlamydia trachomatis D/UW-3/CX]
34-348 -13.600 11  IDP04095 hypothetical protein [Yersinia pestis CO92] YPO1987 [Yersinia pestis CO92]
17 gi|15644652|ref|NP_206821.1| chemotaxis protein (cheV) (HP0019) [Helicobacter pylori 26695] 321 CSGID 1-321 -80.300 27  IDP00997 putative chemotaxis signal transduction protein STM2314 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
18 gi|15644653|ref|NP_206822.1| carboxynorspermidine decarboxylase (nspC) (HP0020) [Helicobacter pylori 26695] 405 CSGID 2-405 -84.700 15  IDP00434 gene: lysA; diaminopimelate decarboxylase YPO0796 [Yersinia pestis CO92]
19 gi|15644654|ref|NP_206823.1| lipid A 1-phosphatase (HP0021) [Helicobacter pylori 26695] 190 CSGID 25-189 -64.400 25  IDP06119 hypothetical protein jhp1487 [Helicobacter pylori J99] NP_224205 [Helicobacter pylori J99]
20 gi|15644655|ref|NP_206824.1| lipid A phosphoethanolamine transferase (HP0022) [Helicobacter pylori 26695] 521 CSGID 184-517 -23.200 12  IDP02230 putative sulfatase [Yersinia pestis CO92] YPO0829 [Yersinia pestis CO92]

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.