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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 1653next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15644635|ref|NP_206803.1| transcription antitermination protein NusB (HP0001) [Helicobacter pylori 26695] 138 HGM_OVER 4-137 -5.930 HGC00422 gi|163631722|dbj|BABG01004545.1|2.0 TMP00397;
2 gi|15644636|ref|NP_206804.1| 6,7-dimethyl-8-ribityllumazine synthase (HP0002) [Helicobacter pylori 26695] 156 HGM_OVER 12-143 -4.540 10  PB035451 Q3Z7G7_DEHE1/1-135 PB035451; Pfam-B_35451;
3 gi|15644637|ref|NP_206805.1| 2-dehydro-3-deoxyphosphooctonate aldolase (HP0003) [Helicobacter pylori 26695] 276 HGM_OVER 14-113 -3.470 HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
4 gi|15644638|ref|NP_206806.1| carbonic anhydrase (icfA) (HP0004) [Helicobacter pylori 26695] 221 HGM_OVER 77-126 -4.040 12  HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
5 gi|15644639|ref|NP_206807.1| orotidine 5'-phosphate decarboxylase (HP0005) [Helicobacter pylori 26695] 227 HGM_OVER 176-226 -1.960 PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete)
6 gi|15644640|ref|NP_206808.1| pantoate--beta-alanine ligase (HP0006) [Helicobacter pylori 26695] 276 HGM_OVER 8-81 -2.790 23  PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]
7 gi|15646197|ref|NP_206811.1| outer membrane protein (HP0009) [Helicobacter pylori 26695] 634 HGM_OVER 434-606 -6.660 14  PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;
8 gi|15644643|ref|NP_206812.1| chaperonin GroEL (HP0010) [Helicobacter pylori 26695] 546 HGM_OVER 77-177 -3.040 14  HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;
9 gi|15644644|ref|NP_206813.1| co-chaperonin GroES (HP0011) [Helicobacter pylori 26695] 118 HGM_OVER 70-106 -3.810 13  PB048420 Q64S71_BACFR/1-165 PB048420; Pfam-B_48420;
10 gi|15644645|ref|NP_206814.1| DNA primase (HP0012) [Helicobacter pylori 26695] 559 HGM_OVER 7-121 -3.180 13  HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
11 gi|15644646|ref|NP_206815.1| hypothetical protein (HP0013) [Helicobacter pylori 26695] 350 HGM_OVER 1-116 -2.470 10  PB040621 Q8A865_BACTN/1-132 PB040621; Pfam-B_40621;
12 gi|15644647|ref|NP_206816.1| hypothetical protein (HP0014) [Helicobacter pylori 26695] 275 HGM_OVER 4-129 -2.470 HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;
13 gi|15644648|ref|NP_206817.1| hypothetical protein (HP0015) [Helicobacter pylori 26695] 93 HGM_OVER 20-93 -5.320 12  PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]
14 gi|15644649|ref|NP_206818.1| hypothetical protein (HP0016) [Helicobacter pylori 26695] 87 HGM_OVER 7-63 -3.850 12  PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;
15 gi|15644650|ref|NP_206819.1| virB4 homolog (virB4) (HP0017) [Helicobacter pylori 26695] 787 HGM_OVER 11-201 -14.000 10  HGC00816 gi|163609134|dbj|BABG01026932.1|1.0 TMP01075;
16 gi|15644651|ref|NP_206820.1| hypothetical protein (HP0018) [Helicobacter pylori 26695] 469 HGM_OVER 1-113 -7.860 10  PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)
17 gi|15644652|ref|NP_206821.1| chemotaxis protein (cheV) (HP0019) [Helicobacter pylori 26695] 321 HGM_OVER 195-287 -3.890 16  PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]
18 gi|15644653|ref|NP_206822.1| carboxynorspermidine decarboxylase (nspC) (HP0020) [Helicobacter pylori 26695] 405 HGM_OVER 83-216 -2.860 PB002534 Q8H9W1_9CAUD/1-397 PB002534; Pfam-B_2534;
19 gi|15644654|ref|NP_206823.1| lipid A 1-phosphatase (HP0021) [Helicobacter pylori 26695] 190 HGM_OVER 40-190 -3.640 11  PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;
20 gi|15644655|ref|NP_206824.1| lipid A phosphoethanolamine transferase (HP0022) [Helicobacter pylori 26695] 521 HGM_OVER 224-427 -3.370 10  PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.