current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 1653next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15644635|ref|NP_206803.1| transcription antitermination protein NusB (HP0001) [Helicobacter pylori 26695] 138 PDB0516 1-138 -71.900 31  3r2d_A mol:protein length:149 N utilization substance protein B
2 gi|15644636|ref|NP_206804.1| 6,7-dimethyl-8-ribityllumazine synthase (HP0002) [Helicobacter pylori 26695] 156 PDB0516 1-155 -97.900 48  1rvv_A mol:protein length:154 RIBOFLAVIN SYNTHASE
3 gi|15644637|ref|NP_206805.1| 2-dehydro-3-deoxyphosphooctonate aldolase (HP0003) [Helicobacter pylori 26695] 276 PDB0516 1-276 -133.000 100  4z1a_A mol:protein length:276 2-dehydro-3-deoxyphosphooctonate aldolase
4 gi|15644638|ref|NP_206806.1| carbonic anhydrase (icfA) (HP0004) [Helicobacter pylori 26695] 221 PDB0516 2-209 -101.000 28  1ekj_A mol:protein length:221 BETA-CARBONIC ANHYDRASE
5 gi|15644639|ref|NP_206807.1| orotidine 5'-phosphate decarboxylase (HP0005) [Helicobacter pylori 26695] 227 PDB0516 2-227 -112.000 35  1dbt_A mol:protein length:239 OROTIDINE 5`-PHOSPHATE DECARBOXYLASE
6 gi|15644640|ref|NP_206808.1| pantoate--beta-alanine ligase (HP0006) [Helicobacter pylori 26695] 276 PDB0516 1-276 -127.000 42  2ejc_A mol:protein length:280 Pantoate--beta-alanine ligase
7 gi|15646197|ref|NP_206811.1| outer membrane protein (HP0009) [Helicobacter pylori 26695] 634 PDB0516 1-460 -29.300 23  4o5j_A mol:protein length:461 Uncharacterized protein
463-634 -13.100 14  2lhf_A mol:protein length:179 Outer membrane protein H1
8 gi|15644643|ref|NP_206812.1| chaperonin GroEL (HP0010) [Helicobacter pylori 26695] 546 PDB0516 1-546 -156.000 60  1grl_A mol:protein length:548 GROEL (HSP60 CLASS)
9 gi|15644644|ref|NP_206813.1| co-chaperonin GroES (HP0011) [Helicobacter pylori 26695] 118 PDB0516 1-90 -52.400 47  4v4o_O mol:protein length:100 cpn10(GroES)
10 gi|15644645|ref|NP_206814.1| DNA primase (HP0012) [Helicobacter pylori 26695] 559 PDB0516 3-415 -104.000 31  2au3_A mol:protein length:407 DNA primase
423-559 -12.400 100  4ehs_A mol:protein length:155 DNA primase
11 gi|15644646|ref|NP_206815.1| hypothetical protein (HP0013) [Helicobacter pylori 26695] 350 PDB0516 2-347 -59.200 15  2hma_A mol:protein length:376 Probable tRNA (5-methylaminomethyl-2-thiourid
12 gi|15644647|ref|NP_206816.1| hypothetical protein (HP0014) [Helicobacter pylori 26695] 275 PDB0516 2-239 -9.500 14  3r6o_A mol:protein length:329 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase
13 gi|15644648|ref|NP_206817.1| hypothetical protein (HP0015) [Helicobacter pylori 26695] 93 PDB0516 19-93 -6.200 12  1cii_A mol:protein length:602 COLICIN IA
14 gi|15644649|ref|NP_206818.1| hypothetical protein (HP0016) [Helicobacter pylori 26695] 87 PDB0516 6-72 -7.330 17  1cii_A mol:protein length:602 COLICIN IA
15 gi|15644650|ref|NP_206819.1| virB4 homolog (virB4) (HP0017) [Helicobacter pylori 26695] 787 PDB0516 295-783 -19.200 12  4d2i_A mol:protein length:500 HERA
404-764 -30.700 14  4ag5_A mol:protein length:392 TYPE IV SECRETORY PATHWAY VIRB4 COMPONENTS-LI
16 gi|15644651|ref|NP_206820.1| hypothetical protein (HP0018) [Helicobacter pylori 26695] 469 PDB0516 21-251 -25.300 10  3u4t_A mol:protein length:272 TPR repeat-containing protein
26-392 -17.700 1w3b_A mol:protein length:388 UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUC
17 gi|15644652|ref|NP_206821.1| chemotaxis protein (cheV) (HP0019) [Helicobacter pylori 26695] 321 PDB0516 12-180 -39.000 18  1k0s_A mol:protein length:151 CHEMOTAXIS PROTEIN CHEW
196-321 -37.100 24  1m5t_A mol:protein length:124 cell division response regulator DivK
18 gi|15644653|ref|NP_206822.1| carboxynorspermidine decarboxylase (nspC) (HP0020) [Helicobacter pylori 26695] 405 PDB0516 2-405 -133.000 47  3n29_A mol:protein length:418 Carboxynorspermidine decarboxylase
19 gi|15644654|ref|NP_206823.1| lipid A 1-phosphatase (HP0021) [Helicobacter pylori 26695] 190 PDB0516 8-189 -34.400 15  4px7_A mol:protein length:262 Phosphatidylglycerophosphatase
20 gi|15644655|ref|NP_206824.1| lipid A phosphoethanolamine transferase (HP0022) [Helicobacter pylori 26695] 521 PDB0516 207-521 -98.000 32  4kav_A mol:protein length:335 YhbX/YhjW/YijP/YjdB family protein


FFAS is supported by the NIH grant R01-GM087218-01
1 2 0 9 4 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zmasek CM, Zhang Q, Ye Y, Godzik A. Surprising complexity of the ancestral apoptosis network. Genome Biol. 2007 Oct 24;8(10):R226 [Epub ahead of print]