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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 1653next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15644635|ref|NP_206803.1| transcription antitermination protein NusB (HP0001) [Helicobacter pylori 26695] 138 PDB1018 3-136 -72.700 29  1tzt_A mol:protein length:142 N utilization substance protein B homolog
2 gi|15644636|ref|NP_206804.1| 6,7-dimethyl-8-ribityllumazine synthase (HP0002) [Helicobacter pylori 26695] 156 PDB1018 1-155 -83.600 48  1rvv_A mol:protein length:154 RIBOFLAVIN SYNTHASE
3 gi|15644637|ref|NP_206805.1| 2-dehydro-3-deoxyphosphooctonate aldolase (HP0003) [Helicobacter pylori 26695] 276 PDB1018 1-276 -115.000 100  4z1a_A mol:protein length:276 2-dehydro-3-deoxyphosphooctonate aldolase
4 gi|15644638|ref|NP_206806.1| carbonic anhydrase (icfA) (HP0004) [Helicobacter pylori 26695] 221 PDB1018 2-209 -90.100 28  1ekj_A mol:protein length:221 BETA-CARBONIC ANHYDRASE
5 gi|15644639|ref|NP_206807.1| orotidine 5'-phosphate decarboxylase (HP0005) [Helicobacter pylori 26695] 227 PDB1018 2-227 -92.800 33  2yyt_A mol:protein length:246 Orotidine 5`-phosphate decarboxylase
6 gi|15644640|ref|NP_206808.1| pantoate--beta-alanine ligase (HP0006) [Helicobacter pylori 26695] 276 PDB1018 1-276 -117.000 41  1ufv_A mol:protein length:276 Pantoate-beta-alanine ligase
7 gi|15646197|ref|NP_206811.1| outer membrane protein (HP0009) [Helicobacter pylori 26695] 634 PDB1018 1-478 -30.700 39  4zh0_A mol:protein length:543 Outer membrane protein-adhesin
434-634 -13.300 13  2lhf_A mol:protein length:179 Outer membrane protein H1
8 gi|15644643|ref|NP_206812.1| chaperonin GroEL (HP0010) [Helicobacter pylori 26695] 546 PDB1018 1-546 -134.000 61  1iok_A mol:protein length:545 CHAPERONIN 60
9 gi|15644644|ref|NP_206813.1| co-chaperonin GroES (HP0011) [Helicobacter pylori 26695] 118 PDB1018 1-90 -49.000 47  4v4o_O mol:protein length:100 cpn10(GroES)
10 gi|15644645|ref|NP_206814.1| DNA primase (HP0012) [Helicobacter pylori 26695] 559 PDB1018 3-415 -98.900 31  2au3_A mol:protein length:407 DNA primase
94-466 -79.900 23  5vaz_A mol:protein length:389 DNA primase
400-559 -10.700 93  4ehs_A mol:protein length:155 DNA primase
11 gi|15644646|ref|NP_206815.1| hypothetical protein (HP0013) [Helicobacter pylori 26695] 350 PDB1018 2-346 -69.200 14  2hma_A mol:protein length:376 Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
12 gi|15644647|ref|NP_206816.1| hypothetical protein (HP0014) [Helicobacter pylori 26695] 275 PDB1018 7-239 -12.400 15  4maq_A mol:protein length:240 Putative fumarylpyruvate hydrolase
13 gi|15644648|ref|NP_206817.1| hypothetical protein (HP0015) [Helicobacter pylori 26695] 93 PDB1018 25-65 -7.330 22  2x2z_A mol:protein length:456 APICAL MEMBRANE ANTIGEN 1, PUTATIVE
14 gi|15644649|ref|NP_206818.1| hypothetical protein (HP0016) [Helicobacter pylori 26695] 87 PDB1018 15-57 -5.480 2xzb_B mol:protein length:290 POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA
15 gi|15644650|ref|NP_206819.1| virB4 homolog (virB4) (HP0017) [Helicobacter pylori 26695] 787 PDB1018 153-707 -12.900 11  4nh0_A mol:protein length:1147 Cell divisionFtsK/SpoIIIE
404-764 -45.900 14  4ag5_A mol:protein length:392 TYPE IV SECRETORY PATHWAY VIRB4 COMPONENTS-LIKE PROTEIN
16 gi|15644651|ref|NP_206820.1| hypothetical protein (HP0018) [Helicobacter pylori 26695] 469 PDB1018 20-394 -15.600 3r9a_B mol:protein length:328 Peroxisomal targeting signal 1 receptor
21-254 -19.100 12  4r7s_A mol:protein length:257 Tetratricopeptide repeat protein
27-160 -20.100 10  2nc9_A mol:protein length:131 Stress-induced-phosphoprotein 1
36-341 -16.700 3cvq_A mol:protein length:327 Peroxisome targeting signal 1 receptor PEX5
17 gi|15644652|ref|NP_206821.1| chemotaxis protein (cheV) (HP0019) [Helicobacter pylori 26695] 321 PDB1018 195-318 -48.800 22  4h60_A mol:protein length:120 Chemotaxis protein CheY
18 gi|15644653|ref|NP_206822.1| carboxynorspermidine decarboxylase (nspC) (HP0020) [Helicobacter pylori 26695] 405 PDB1018 2-405 -94.700 45  3n29_A mol:protein length:418 Carboxynorspermidine decarboxylase
19 gi|15644654|ref|NP_206823.1| lipid A 1-phosphatase (HP0021) [Helicobacter pylori 26695] 190 PDB1018 13-189 -44.800 14  4px7_A mol:protein length:262 Phosphatidylglycerophosphatase
20 gi|15644655|ref|NP_206824.1| lipid A phosphoethanolamine transferase (HP0022) [Helicobacter pylori 26695] 521 PDB1018 4-521 -96.100 24  5fgn_A mol:protein length:550 lipooligosaccharide phosphoethanolamine transferase A


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Igarashi Y, Eroshkin A, Gramatikova S, Gramatikoff K, Zhang Y, Smith JW,Osterman AL, Godzik A. CutDB: a proteolytic event database. Nucleic Acids Res. 2007 Jan;35(Database issue):D546-9. Epub 2006 Nov 16.