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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 1653next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15644635|ref|NP_206803.1| transcription antitermination protein NusB (HP0001) [Helicobacter pylori 26695] 138 PfamA32U 5-130 -71.900 24  PF01029.18; NUSB_DEHM1/6-132; NusB family
2 gi|15644636|ref|NP_206804.1| 6,7-dimethyl-8-ribityllumazine synthase (HP0002) [Helicobacter pylori 26695] 156 PfamA32U 13-152 -81.300 50  PF00885.19; R7PPI3_9FIRM/12-151; 6,7-dimethyl-8-ribityllumazine synthase
3 gi|15644637|ref|NP_206805.1| 2-dehydro-3-deoxyphosphooctonate aldolase (HP0003) [Helicobacter pylori 26695] 276 PfamA32U 1-270 -64.200 12  PF00793.20; AROG_HAEIN/32-347; DAHP synthetase I family
4 gi|15644638|ref|NP_206806.1| carbonic anhydrase (icfA) (HP0004) [Helicobacter pylori 26695] 221 PfamA32U 33-195 -83.000 27  PF00484.19; Q28W87_JANSC/42-203; Carbonic anhydrase
5 gi|15644639|ref|NP_206807.1| orotidine 5'-phosphate decarboxylase (HP0005) [Helicobacter pylori 26695] 227 PfamA32U 2-223 -91.000 33  PF00215.24; PYRF_STRP1/5-224; Orotidine 5`-phosphate decarboxylase / HUMPS family
6 gi|15644640|ref|NP_206808.1| pantoate--beta-alanine ligase (HP0006) [Helicobacter pylori 26695] 276 PfamA32U 3-275 -115.000 38  PF02569.15; L0F3M1_DESDL/2-278; Pantoate-beta-alanine ligase
7 gi|15646197|ref|NP_206811.1| outer membrane protein (HP0009) [Helicobacter pylori 26695] 634 PfamA32U 8-268 -20.300 49  PF18304.1; O25086_HELPY/46-369; SabA N-terminal extracellular adhesion domain
413-634 -9.640 11  PF05736.11; PORF_PSEFL/1-186; OprF membrane domain
465-634 -59.700 38  PF01856.17; O26005_HELPY/59-248; Helicobacter outer membrane protein
8 gi|15644643|ref|NP_206812.1| chaperonin GroEL (HP0010) [Helicobacter pylori 26695] 546 PfamA32U 22-522 -110.000 16  PF00118.24; TCPB_DICDI/34-524; TCP-1/cpn60 chaperonin family
9 gi|15644644|ref|NP_206813.1| co-chaperonin GroES (HP0011) [Helicobacter pylori 26695] 118 PfamA32U 3-87 -45.200 35  PF00166.21; B7PEU9_IXOSC/8-98; Chaperonin 10 Kd subunit
10 gi|15644645|ref|NP_206814.1| DNA primase (HP0012) [Helicobacter pylori 26695] 559 PfamA32U 3-98 -53.700 45  PF01807.20; DNAG_PSEPK/6-101; CHC2 zinc finger
117-239 -50.000 35  PF08275.11; Q8F416_LEPIN/119-248; DNA primase catalytic core, N-terminal domain
249-334 -43.100 45  PF13155.6; Q8EPY5_OCEIH/263-348; Toprim-like
11 gi|15644646|ref|NP_206815.1| hypothetical protein (HP0013) [Helicobacter pylori 26695] 350 PfamA32U 4-346 -66.600 13  PF03054.16; MNMA_CHLTR/3-350; tRNA methyl transferase
12 gi|15644647|ref|NP_206816.1| hypothetical protein (HP0014) [Helicobacter pylori 26695] 275 PfamA32U 8-241 -11.500 12  PF11010.8; A4Z3D7_BRASO/29-221; Protein of unknown function (DUF2848 topsan)
13 gi|15644648|ref|NP_206817.1| hypothetical protein (HP0015) [Helicobacter pylori 26695] 93 PfamA32U 21-89 -11.700 18  PF04956.13; Q1M9P0_RHIL3/1-100; TrbC/VIRB2 family
14 gi|15644649|ref|NP_206818.1| hypothetical protein (HP0016) [Helicobacter pylori 26695] 87 PfamA32U 64-84 -7.350 23  PF16636.5; G1M1X1_AILME/1871-1951; Unstructured region on APC between APC_crr regions 5 and 6
15 gi|15644650|ref|NP_206819.1| virB4 homolog (virB4) (HP0017) [Helicobacter pylori 26695] 787 PfamA32U 25-251 -17.100 10  PF11130.8; G0A5A8_METMM/40-307; F pilus assembly Type-IV secretion system for plasmid transfer
175-375 -48.800 15  PF03135.14; Q9ZE45_RICPR/194-399; CagE, TrbE, VirB family, component of type IV transporter system
416-732 -41.300 11  PF12846.7; Q833R2_ENTFA/443-804; AAA-like domain
436-772 -19.400 13  PF10412.9; A4XE63_NOVAD/225-611; Type IV secretion-system coupling protein DNA-binding domain
16 gi|15644651|ref|NP_206820.1| hypothetical protein (HP0018) [Helicobacter pylori 26695] 469 PfamA32U 1-416 -11.200 PF10345.9; Q6CDL4_YARLI/63-642; Cohesin loading factor
20-160 -17.600 11  PF12968.7; Q8KAL8_CHLTE/2-144; Domain of Unknown Function (DUF3856 topsan)
34-396 -15.700 11  PF12569.8; A7S752_NEMVE/188-686; NMDA receptor-regulated protein 1
17 gi|15644652|ref|NP_206821.1| chemotaxis protein (cheV) (HP0019) [Helicobacter pylori 26695] 321 PfamA32U 25-173 -20.900 12  PF01584.19; Q8XQ78_RALSO/559-691; CheW-like domain
199-318 -38.300 20  PF00072.24; RSSB_ECOLI/10-121; Response regulator receiver domain
18 gi|15644653|ref|NP_206822.1| carboxynorspermidine decarboxylase (nspC) (HP0020) [Helicobacter pylori 26695] 405 PfamA32U 11-364 -69.700 17  PF00278.22; Q088K9_SHEFN/29-368; Pyridoxal-dependent decarboxylase, C-terminal sheet domain
19 gi|15644654|ref|NP_206823.1| lipid A 1-phosphatase (HP0021) [Helicobacter pylori 26695] 190 PfamA32U 44-183 -24.600 11  PF14378.6; R7Y200_9ACTN/124-318; PAP2 superfamily
78-190 -36.600 14  PF01569.21; A7EIU4_SCLS1/134-294; PAP2 superfamily
20 gi|15644655|ref|NP_206824.1| lipid A phosphoethanolamine transferase (HP0022) [Helicobacter pylori 26695] 521 PfamA32U 50-500 -25.500 PF11658.8; D8MLA0_ERWBE/20-540; Cellulose biosynthesis protein BcsG


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.