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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 1653next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15644635|ref|NP_206803.1| transcription antitermination protein NusB (HP0001) [Helicobacter pylori 26695] 138 VFDB 2-135 -71.700 27  [K] COG0781 Transcription termination factor
2 gi|15644636|ref|NP_206804.1| 6,7-dimethyl-8-ribityllumazine synthase (HP0002) [Helicobacter pylori 26695] 156 VFDB 10-156 -81.600 50  [H] COG0054 Riboflavin synthase beta-chain
3 gi|15644637|ref|NP_206805.1| 2-dehydro-3-deoxyphosphooctonate aldolase (HP0003) [Helicobacter pylori 26695] 276 VFDB 1-276 -83.900 41  [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase
4 gi|15644638|ref|NP_206806.1| carbonic anhydrase (icfA) (HP0004) [Helicobacter pylori 26695] 221 VFDB 2-219 -87.300 23  [P] KOG1578 Predicted carbonic anhydrase involved in protection against oxidative damage
5 gi|15644639|ref|NP_206807.1| orotidine 5'-phosphate decarboxylase (HP0005) [Helicobacter pylori 26695] 227 VFDB 2-227 -92.500 33  [F] COG0284 Orotidine-5`-phosphate decarboxylase
6 gi|15644640|ref|NP_206808.1| pantoate--beta-alanine ligase (HP0006) [Helicobacter pylori 26695] 276 VFDB 1-276 -117.000 39  [H] COG0414 Panthothenate synthetase
7 gi|15646197|ref|NP_206811.1| outer membrane protein (HP0009) [Helicobacter pylori 26695] 634 VFDB 3-467 -9.730 [TU] KOG3895 Synaptic vesicle protein Synapsin
8 gi|15644643|ref|NP_206812.1| chaperonin GroEL (HP0010) [Helicobacter pylori 26695] 546 VFDB 1-537 -144.000 51  [O] KOG0356 Mitochondrial chaperonin, Cpn60/Hsp60p
9 gi|15644644|ref|NP_206813.1| co-chaperonin GroES (HP0011) [Helicobacter pylori 26695] 118 VFDB 1-90 -46.200 40  [O] COG0234 Co-chaperonin GroES (HSP10)
10 gi|15644645|ref|NP_206814.1| DNA primase (HP0012) [Helicobacter pylori 26695] 559 VFDB 1-558 -116.000 26  [L] COG0358 DNA primase (bacterial type)
11 gi|15644646|ref|NP_206815.1| hypothetical protein (HP0013) [Helicobacter pylori 26695] 350 VFDB 2-346 -68.800 13  [J] COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain
12 gi|15644647|ref|NP_206816.1| hypothetical protein (HP0014) [Helicobacter pylori 26695] 275 VFDB 7-275 -11.700 13  [R] COG3970 Fumarylacetoacetate (FAA) hydrolase family protein
13 gi|15644648|ref|NP_206817.1| hypothetical protein (HP0015) [Helicobacter pylori 26695] 93 VFDB 8-91 -12.000 17  [U] COG3838 Type IV secretory pathway, VirB2 components (pilins)
14 gi|15644649|ref|NP_206818.1| hypothetical protein (HP0016) [Helicobacter pylori 26695] 87 VFDB 11-86 -10.500 [U] COG3702 Type IV secretory pathway, VirB3 components
15 gi|15644650|ref|NP_206819.1| virB4 homolog (virB4) (HP0017) [Helicobacter pylori 26695] 787 VFDB 257-786 -80.600 15  [U] COG3451 Type IV secretory pathway, VirB4 components
16 gi|15644651|ref|NP_206820.1| hypothetical protein (HP0018) [Helicobacter pylori 26695] 469 VFDB 1-469 -162.000 98  [S] COG3014 Uncharacterized protein conserved in bacteria
17 gi|15644652|ref|NP_206821.1| chemotaxis protein (cheV) (HP0019) [Helicobacter pylori 26695] 321 VFDB 1-198 -35.000 23  [NT] COG0835 Chemotaxis signal transduction protein
196-321 -33.800 20  [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
18 gi|15644653|ref|NP_206822.1| carboxynorspermidine decarboxylase (nspC) (HP0020) [Helicobacter pylori 26695] 405 VFDB 2-405 -80.100 13  [E] COG0019 Diaminopimelate decarboxylase
19 gi|15644654|ref|NP_206823.1| lipid A 1-phosphatase (HP0021) [Helicobacter pylori 26695] 190 VFDB 30-189 -49.600 14  [S] KOG4268 Uncharacterized conserved protein containing PAP2 domain
20 gi|15644655|ref|NP_206824.1| lipid A phosphoethanolamine transferase (HP0022) [Helicobacter pylori 26695] 521 VFDB 3-521 -96.800 25  [R] COG2194 Predicted membrane-associated, metal-dependent hydrolase


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;