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# Query Length Result vs. Range Score %id Covered by template(s)
1 sp|Q29940|1B59_HUMAN(removed signalp:1-24) HLA class I histocompatibility antigen, B-59 alpha chain OS=Homo sapiens GN=HLA-B PE=2 SV=1 338 COG1018 178-338 -9.290 13  [R] KOG3515 Predicted transmembrane protein of the immunoglobulin family of cell adhesion molecules
CSGID 94-338 -26.300 CPX_91747_91753 Complex of Q8WLQ7_HUMAN with TSST_STAAU [Undefined organism]
H.sapiens 1-338 -135.000 96  sp|P30495|1B56_HUMAN(removed signalp:1-24) HLA class I histocompatibility antigen, B-56 alpha chain OS=Homo sapiens GN=HLA-B PE=2 SV=1
HGM_OVER 176-338 -4.920 10  HGC01213 gi|163579070|dbj|BABE01006032.1|2.0 TMP01709;
NEW_HUMAN_DOMAINS 183-282 -11.800 sp|Q8IZF5|GP113_HUMAN Probable G-protein coupled receptor 113 OS=Homo sapiens GN=GPR113 PE=2 SV=1 (Range: 234-351)
PDB1018 1-338 -130.000 84  6eny_F mol:protein length:341 HLA class I histocompatibility antigen, A-3 alpha chain
PfamA32U 1-179 -62.800 73  PF00129.18; HA10_MOUSE/25-203; Class I Histocompatibility antigen, domains alpha 1 and 2
181-287 -33.600 15  PF15028.6; A0A2I3G3P5_NOMLE/20-146; Pre-T-cell antigen receptor
190-266 -36.100 23  PF07654.15; H9GZQ9_HORSE/236-322; Immunoglobulin C1-set domain
SCOP207 1-181 -63.600 88  d1k5na2 d.19.1.1 (A:1-181) Class I MHC, alpha-1 and alpha-2 domains {Human (Homo sapiens), HLA-B27 [TaxId: 9606]}
182-276 -54.500 100  d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}
VFDB 178-338 -9.290 13  [R] KOG3515 Predicted transmembrane protein of the immunoglobulin family of cell adhesion molecules
2 sp|P08908|5HT1A_HUMAN 5-hydroxytryptamine receptor 1A OS=Homo sapiens GN=HTR1A PE=1 SV=3 422 COG1018 2-422 -93.800 33  [R] KOG3656 FOG: 7 transmembrane receptor
CSGID 37-235 -8.280 13  IDP91400 ABC-type amino acid transport system, permease component [Vibrio vulnificus CMCP6] VV1_1002 [Vibrio vulnificus CMCP6]
H.sapiens 1-417 -106.000 27  sp|P14416|DRD2_HUMAN D(2) dopamine receptor OS=Homo sapiens GN=DRD2 PE=1 SV=2
HGM_OVER 59-153 -5.270 13  PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]
NEW_HUMAN_DOMAINS 392-409 -7.660 27  sp|Q8TE12|LMX1A_HUMAN LIM homeobox transcription factor 1-alpha OS=Homo sapiens GN=LMX1A PE=2 SV=1 (Range: 274-382)
PDB1018 17-421 -106.000 35  4iaq_A mol:protein length:403 Chimera protein of human 5-hydroxytryptamine receptor 1B and E. Coli soluble cytochrome b562
PfamA32U 32-422 -27.600 PF04789.15; E3LU62_CAERE/638-942; Protein of unknown function (DUF621 topsan)
53-400 -90.500 36  PF00001.21; HRH2_CANLF/35-288; 7 transmembrane receptor (rhodopsin family)
SCOP207 1-422 -75.600 18  d2g87a_ f.13.1.2 (A:) automated matches {Cow (Bos taurus) [TaxId: 9913]}
32-415 -90.800 38  d4bvna_ f.13.1.3 (A:) automated matches {Turkey (Meleagris gallopavo) [TaxId: 9103]}
VFDB 2-422 -93.800 33  [R] KOG3656 FOG: 7 transmembrane receptor
3 sp|Q15758|AAAT_HUMAN Neutral amino acid transporter B(0) OS=Homo sapiens GN=SLC1A5 PE=1 SV=2 541 COG1018 51-512 -88.500 28  [C] COG1301 Na+/H+-dicarboxylate symporters
CSGID 58-481 -7.270 14  IDP91361 NhaP-type Na+/H+ and K+/H+ antiporters [Vibrio vulnificus CMCP6] VV1_2840 [Vibrio vulnificus CMCP6]
H.sapiens 26-540 -113.000 57  sp|P43007|SATT_HUMAN Neutral amino acid transporter A OS=Homo sapiens GN=SLC1A4 PE=1 SV=1
HGM_OVER 341-483 -4.910 17  PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]
NEW_HUMAN_DOMAINS 342-417 -5.960 13  sp|O14772|FPGT_HUMAN Fucose-1-phosphate guanylyltransferase OS=Homo sapiens GN=FPGT PE=1 SV=2 (Range: 25-113)
PDB1018 1-541 -125.000 100  6gct_A mol:protein length:541 Neutral amino acid transporter B(0)
PfamA32U 54-484 -89.600 36  PF00375.18; Q8EU68_OCEIH/3-398; Sodium:dicarboxylate symporter family
SCOP207 53-486 -85.400 29  d2nwla_ f.49.1.1 (A:) automated matches {Pyrococcus horikoshii [TaxId: 53953]}
VFDB 51-512 -88.500 28  [C] COG1301 Na+/H+-dicarboxylate symporters
4 sp|P61221|ABCE1_HUMAN ATP-binding cassette sub-family E member 1 OS=Homo sapiens GN=ABCE1 PE=1 SV=1 599 COG1018 1-599 -112.000 67  [A] KOG0063 RNAse L inhibitor, ABC superfamily
CSGID 68-579 -73.000 18  IDP01301 peptide ABC transporter, ATP-binding protein VC0170 [Vibrio cholerae O1 biovar El Tor str. N16961]
H.sapiens 29-296 -32.100 17  sp|Q9NUQ8|ABCF3_HUMAN ATP-binding cassette sub-family F member 3 OS=Homo sapiens GN=ABCF3 PE=1 SV=2 (Range: 451-709)
60-292 -33.500 20  sp|P78363|ABCA4_HUMAN(removed signalp:1-47) Retinal-specific ATP-binding cassette transporter OS=Homo sapiens GN=ABCA4 PE=1 SV=3 (Range: 1801-2100)
100-297 -33.900 19  sp|Q03519|TAP2_HUMAN(removed signalp:1-28) Antigen peptide transporter 2 OS=Homo sapiens GN=TAP2 PE=1 SV=1 (Range: 451-658)
216-469 -31.500 16  sp|Q8NE71|ABCF1_HUMAN ATP-binding cassette sub-family F member 1 OS=Homo sapiens GN=ABCF1 PE=1 SV=2 (Range: 451-750)
354-541 -33.200 24  sp|Q8IUA7|ABCA9_HUMAN ATP-binding cassette sub-family A member 9 OS=Homo sapiens GN=ABCA9 PE=1 SV=1 (Range: 1201-1500)
361-572 -29.000 16  sp|O15440|MRP5_HUMAN Multidrug resistance-associated protein 5 OS=Homo sapiens GN=ABCC5 PE=1 SV=2 (Range: 1201-1437)
HGM_OVER 379-500 -1.950 HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;
NEW_HUMAN_DOMAINS 366-389 -6.270 sp|Q6P2S7|GNN_HUMAN Tetratricopeptide repeat protein GNN OS=Homo sapiens GN=GNN PE=2 SV=3 (Range: 217-335)
PDB1018 1-599 -109.000 65  3j16_B mol:protein length:608 Rli1p
PfamA32U 70-279 -11.400 12  PF13175.6; I1YS32_PREI7/1-378; AAA ATPase domain
100-245 -31.700 19  PF00005.27; YTFR_ECOLI/25-174; ABC transporter
116-545 -23.500 PF09818.9; Q10V01_TRIEI/4-493; Predicted ATPase of the ABC class
SCOP207 7-74 -10.500 25  d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}
69-311 -46.200 16  d3tuic1 c.37.1.12 (C:1-240) automated matches {Escherichia coli K-12 [TaxId: 83333]}
104-533 -9.760 13  d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
354-556 -42.300 18  d2nq2c_ c.37.1.0 (C:) automated matches {Haemophilus influenzae [TaxId: 727]}
VFDB 1-599 -112.000 67  [A] KOG0063 RNAse L inhibitor, ABC superfamily
5 sp|P07108|ACBP_HUMAN Acyl-CoA-binding protein OS=Homo sapiens GN=DBI PE=1 SV=2 87 COG1018 1-86 -62.200 48  [I] COG4281 Acyl-CoA-binding protein
CSGID 1-80 -13.000 41  IDP04044 gene: fadB/acbP; fusion product of 3-hydroxacyl-CoA dehydrogenase and acyl-CoA-binding protein [Francisella tularensis subsp. tularensis SCHU S4] FTT1530 [Francisella tularensis subsp. tularensis SCHU S4]
H.sapiens 3-87 -61.800 62  sp|Q8N6N7|ACBD7_HUMAN Acyl-CoA-binding domain-containing protein 7 OS=Homo sapiens GN=ACBD7 PE=1 SV=1
HGM_OVER 1-64 -3.640 12  PB001404 Q2S5L8_SALRD/1-256 PB001404; Pfam-B_1404;
NEW_HUMAN_DOMAINS 5-58 -7.410 28  sp|Q13686|ALKB1_HUMAN Alkylated DNA repair protein alkB homolog 1 OS=Homo sapiens GN=ALKBH1 PE=1 SV=2 (Range: 1-52)
PDB1018 1-87 -65.000 100  2cb8_A mol:protein length:87 ACYL-COA-BINDING PROTEIN
PfamA32U 3-83 -60.100 34  PF00887.19; B7PHH9_IXOSC/19-99; Acyl CoA binding protein
SCOP207 2-87 -63.000 100  d2cb8a_ a.11.1.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
VFDB 1-86 -62.200 48  [I] COG4281 Acyl-CoA-binding protein
6 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 1-300) 300 COG1018 2-300 -93.300 33  [IQ] KOG0135 Pristanoyl-CoA/acyl-CoA oxidase
CSGID 4-300 -32.200 13  IDP90795 gene: fadE; acyl-CoA dehydrogenase [Yersinia pestis CO92] YPO3244 [Yersinia pestis CO92]
41-300 -39.000 16  IDP02763 acyl-CoA dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA2547 [Bacillus anthracis str. `Ames Ancestor`]
H.sapiens 18-293 -103.000 30  sp|Q15067|ACOX1_HUMAN Peroxisomal acyl-coenzyme A oxidase 1 OS=Homo sapiens GN=ACOX1 PE=1 SV=3 (Range: 1-300)
HGM_OVER 146-284 -4.450 10  PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;
NEW_HUMAN_DOMAINS 154-276 -6.810 sp|Q6P2C0|WDR93_HUMAN WD repeat-containing protein 93 OS=Homo sapiens GN=WDR93 PE=2 SV=1 (Range: 101-233)
PDB1018 18-300 -91.000 29  1is2_A mol:protein length:661 acyl-CoA oxidase
PfamA32U 31-153 -28.000 11  PF14749.6; F1R3V9_DANRE/15-133; Acyl-coenzyme A oxidase N-terminal
155-266 -28.200 26  PF02770.19; Q7MW70_PORGI/172-269; Acyl-CoA dehydrogenase, middle domain
SCOP207 17-289 -103.000 35  d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
VFDB 2-300 -93.300 33  [IQ] KOG0135 Pristanoyl-CoA/acyl-CoA oxidase
7 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 151-450) 300 COG1018 1-300 -113.000 43  [IQ] KOG0135 Pristanoyl-CoA/acyl-CoA oxidase
CSGID 1-300 -43.700 23  IDP02763 acyl-CoA dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA2547 [Bacillus anthracis str. `Ames Ancestor`]
H.sapiens 6-300 -126.000 37  sp|Q99424|ACOX2_HUMAN Peroxisomal acyl-coenzyme A oxidase 2 OS=Homo sapiens GN=ACOX2 PE=1 SV=1 (Range: 151-450)
HGM_OVER 1-134 -3.460 PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;
NEW_HUMAN_DOMAINS 4-126 -6.800 sp|Q6P2C0|WDR93_HUMAN WD repeat-containing protein 93 OS=Homo sapiens GN=WDR93 PE=2 SV=1 (Range: 101-233)
PDB1018 1-300 -112.000 37  5y9d_A mol:protein length:709 Acyl-coenzyme A oxidase 1
PfamA32U 5-116 -28.100 26  PF02770.19; Q7MW70_PORGI/172-269; Acyl-CoA dehydrogenase, middle domain
144-300 -25.500 17  PF00441.24; I6XFA9_MYCTU/253-403; Acyl-CoA dehydrogenase, C-terminal domain
SCOP207 1-139 -74.600 50  d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
148-300 -60.400 38  d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
VFDB 1-300 -113.000 43  [IQ] KOG0135 Pristanoyl-CoA/acyl-CoA oxidase
8 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 301-600) 300 COG1018 1-300 -77.000 27  [I] KOG0136 Acyl-CoA oxidase
CSGID 1-168 -26.600 19  IDP01084 gene: aidB; putative acyl-CoA dehydrogenase STM4377 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
1-296 -24.000 15  IDP04432 acyl-CoA dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA5246 [Bacillus anthracis str. `Ames Ancestor`]
H.sapiens 11-300 -108.000 27  sp|Q99424|ACOX2_HUMAN Peroxisomal acyl-coenzyme A oxidase 2 OS=Homo sapiens GN=ACOX2 PE=1 SV=1 (Range: 301-600)
HGM_OVER 27-201 -3.480 10  PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;
NEW_HUMAN_DOMAINS 33-172 -6.060 14  sp|Q8N3J2|METL4_HUMAN Methyltransferase-like protein 4 OS=Homo sapiens GN=METTL4 PE=2 SV=3 (Range: 133-280)
PDB1018 1-300 -77.700 25  5ys9_A mol:protein length:708 Acyl-coenzyme A oxidase 3
PfamA32U 1-166 -35.100 19  PF00441.24; I6XFA9_MYCTU/253-403; Acyl-CoA dehydrogenase, C-terminal domain
210-300 -26.800 42  PF01756.19; K1PYL9_CRAGI/349-534; Acyl-CoA oxidase
SCOP207 1-188 -85.900 35  d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
195-300 -24.000 20  d1w07a2 a.29.3.2 (A:462-659) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
VFDB 1-300 -77.000 27  [I] KOG0136 Acyl-CoA oxidase
9 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 451-700) 250 COG1018 1-250 -58.300 24  [I] KOG0136 Acyl-CoA oxidase
CSGID 11-232 -5.890 11  IDP00523 gene: ampH; beta-lactamase/D-alanine carboxypeptidase YPO1224 [Yersinia pestis CO92]
H.sapiens 11-250 -78.200 21  sp|Q99424|ACOX2_HUMAN Peroxisomal acyl-coenzyme A oxidase 2 OS=Homo sapiens GN=ACOX2 PE=1 SV=1 (Range: 451-681)
HGM_OVER 143-250 -4.720 13  PB177066 Q891G9_CLOTE/1-159 PB177066; Pfam-B_177066;
NEW_HUMAN_DOMAINS 89-214 -5.890 11  sp|Q8TC36|SUN5_HUMAN SUN domain-containing protein 5 OS=Homo sapiens GN=SUN5 PE=2 SV=1 (Range: 47-231)
PDB1018 1-250 -58.300 23  1is2_A mol:protein length:661 acyl-CoA oxidase
PfamA32U 60-242 -74.500 48  PF01756.19; K1PYL9_CRAGI/349-534; Acyl-CoA oxidase
SCOP207 1-37 -12.700 21  d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
43-250 -68.500 22  d1w07a2 a.29.3.2 (A:462-659) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
VFDB 1-250 -58.300 24  [I] KOG0136 Acyl-CoA oxidase
10 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 1-300) 300 COG1018 7-300 -71.600 24  [O] KOG3607 Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family
CSGID 30-276 -6.380 15  IDP02312 FtsK/SpoIIIE family protein [Bacillus anthracis str. `Ames Ancestor`] GBAA2190 [Bacillus anthracis str. `Ames Ancestor`]
H.sapiens 4-300 -106.000 30  sp|Q13443|ADAM9_HUMAN(removed signalp:1-28) Disintegrin and metalloproteinase domain-containing protein 9 OS=Homo sapiens GN=ADAM9 PE=1 SV=1 (Range: 1-300)
HGM_OVER 95-259 -5.670 10  PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]
NEW_HUMAN_DOMAINS 192-275 -6.350 15  sp|Q6ZS81|WDFY4_HUMAN WD repeat- and FYVE domain-containing protein 4 OS=Homo sapiens GN=WDFY4 PE=1 SV=3 (Range: 1961-2094)
PDB1018 1-300 -12.500 3p24_A mol:protein length:397 BFT-3
179-300 -57.900 49  1r54_A mol:protein length:214 ADAM 33
PfamA32U 2-137 -52.000 14  PF01562.19; F4WTG8_ACREC/43-191; Reprolysin family propeptide
185-300 -54.300 24  PF01421.19; ADAM2_BOVIN/178-375; Reprolysin (M12B) family zinc metalloprotease
SCOP207 183-300 -57.600 50  d1r55a1 d.92.1.9 (A:208-409) ADAM33 {Human (Homo sapiens) [TaxId: 9606]}
VFDB 7-300 -71.600 24  [O] KOG3607 Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family
11 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 151-450) 300 COG1018 1-300 -69.800 30  [O] KOG3607 Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family
CSGID 34-234 -19.300 12  IDP02828 hypothetical protein GBAA4243 [Bacillus anthracis str. `Ames Ancestor`] GBAA4243 [Bacillus anthracis str. `Ames Ancestor`]
H.sapiens 7-300 -114.000 51  sp|Q9BZ11|ADA33_HUMAN(removed signalp:1-28) Disintegrin and metalloproteinase domain-containing protein 33 OS=Homo sapiens GN=ADAM33 PE=1 SV=2 (Range: 151-450)
HGM_OVER 7-109 -4.250 PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]
NEW_HUMAN_DOMAINS 222-299 -10.700 25  sp|Q9BXP8|PAPP2_HUMAN Pappalysin-2 OS=Homo sapiens GN=PAPPA2 PE=1 SV=4 (Range: 838-1362)
PDB1018 20-300 -94.900 39  2ero_A mol:protein length:427 vascular apoptosis-inducing protein 1
PfamA32U 35-233 -77.100 23  PF01421.19; ADAM2_BOVIN/178-375; Reprolysin (M12B) family zinc metalloprotease
250-300 -25.500 49  PF00200.23; G3I9D8_CRIGR/417-489; Disintegrin
SCOP207 33-233 -83.300 54  d1r55a1 d.92.1.9 (A:208-409) ADAM33 {Human (Homo sapiens) [TaxId: 9606]}
252-300 -22.600 54  d4r5ra_ g.20.1.1 (A:) Kistrin (rhodostomin) {Agkistrodon rhodostoma [TaxId: 8717]}
VFDB 1-300 -69.800 30  [O] KOG3607 Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family
12 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 301-600) 300 COG1018 1-299 -68.400 34  [O] KOG3607 Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family
CSGID 1-104 -13.100 14  IDP02828 hypothetical protein GBAA4243 [Bacillus anthracis str. `Ames Ancestor`] GBAA4243 [Bacillus anthracis str. `Ames Ancestor`]
8-71 -13.900 20  IDP02151 hypothetical protein GBAA3159 [Bacillus anthracis str. `Ames Ancestor`] GBAA3159 [Bacillus anthracis str. `Ames Ancestor`]
H.sapiens 1-293 -95.900 55  sp|O43184|ADA12_HUMAN(removed signalp:1-28) Disintegrin and metalloproteinase domain-containing protein 12 OS=Homo sapiens GN=ADAM12 PE=1 SV=3 (Range: 301-600)
HGM_OVER 140-207 -7.030 17  PB001030 Q6D4H5_ERWCT/1-146 PB001030; Pfam-B_1030;
NEW_HUMAN_DOMAINS 72-288 -9.520 15  sp|Q9BXP8|PAPP2_HUMAN Pappalysin-2 OS=Homo sapiens GN=PAPPA2 PE=1 SV=4 (Range: 838-1362)
PDB1018 1-259 -81.000 40  2dw0_A mol:protein length:419 Catrocollastatin
1-299 -80.900 35  3g5c_A mol:protein length:510 ADAM 22
PfamA32U 1-83 -28.100 24  PF01421.19; ADAM2_BOVIN/178-375; Reprolysin (M12B) family zinc metalloprotease
100-172 -38.100 49  PF00200.23; G3I9D8_CRIGR/417-489; Disintegrin
177-293 -42.100 32  PF08516.12; F7FQP8_MONDO/502-619; ADAM cysteine-rich
SCOP207 1-83 -32.800 62  d1r55a1 d.92.1.9 (A:208-409) ADAM33 {Human (Homo sapiens) [TaxId: 9606]}
102-172 -29.700 46  d4r5ra_ g.20.1.1 (A:) Kistrin (rhodostomin) {Agkistrodon rhodostoma [TaxId: 8717]}
VFDB 1-299 -68.400 34  [O] KOG3607 Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family
13 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 451-750) 300 COG1018 1-265 -62.400 29  [O] KOG3607 Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family
1-300 -39.300 12  [W] KOG3658 Tumor necrosis factor-alpha-converting enzyme (TACE/ADAM17) and related metalloproteases
CSGID 155-263 -10.800 12  IDP90175 gene: VGF; CPXV021 protein or CPXV VGF protein AAM13468.1 [Cowpox virus (Brighton Red)]
H.sapiens 3-299 -93.400 40  sp|Q9BZ11|ADA33_HUMAN(removed signalp:1-28) Disintegrin and metalloproteinase domain-containing protein 33 OS=Homo sapiens GN=ADAM33 PE=1 SV=2 (Range: 451-750)
HGM_OVER 4-56 -6.790 19  PB001030 Q6D4H5_ERWCT/1-146 PB001030; Pfam-B_1030;
NEW_HUMAN_DOMAINS 7-104 -7.680 17  sp|Q5NDL2|AER61_HUMAN Uncharacterized glycosyltransferase AER61 OS=Homo sapiens GN=AER61 PE=2 SV=1 (Range: 19-152)
PDB1018 1-227 -74.400 31  3g5c_A mol:protein length:510 ADAM 22
PfamA32U 12-248 -10.600 PF06656.11; GLYC_RSVT/41-824; Tenuivirus PVC2 protein
27-148 -38.200 29  PF08516.12; F7FQP8_MONDO/502-619; ADAM cysteine-rich
SCOP207 1-29 -11.400 34  d2echa_ g.20.1.1 (A:) Echistatin {Saw-scaled viper (Echis carinatus) [TaxId: 40353]}
VFDB 1-265 -62.400 29  [O] KOG3607 Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family
1-300 -39.300 12  [W] KOG3658 Tumor necrosis factor-alpha-converting enzyme (TACE/ADAM17) and related metalloproteases
14 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 601-900) 300 COG1018 1-115 -33.300 27  [O] KOG3607 Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family
1-258 -26.200 [W] KOG3658 Tumor necrosis factor-alpha-converting enzyme (TACE/ADAM17) and related metalloproteases
14-299 -16.000 10  [O] KOG0802 E3 ubiquitin ligase
CSGID 1-300 -10.500 IDP91542 3`,5`-cyclic phosphodiesterase, putative [Toxoplasma gondii ME49] TGME49_080410 [Toxoplasma gondii ME49]
2-67 -10.800 21  IDP91731 gene: EGFL7; epidermal growth factor-like protein 7 [Homo sapiens] NP_958854 [Homo sapiens]
109-300 -14.700 IDP91949 pneumococcal histidine triad protein E [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100007099 [Streptococcus pneumoniae str. Canada MDR_19A]
H.sapiens 1-288 -50.400 25  sp|O43184|ADA12_HUMAN(removed signalp:1-28) Disintegrin and metalloproteinase domain-containing protein 12 OS=Homo sapiens GN=ADAM12 PE=1 SV=3 (Range: 601-881)
HGM_OVER 5-58 -5.500 22  HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
NEW_HUMAN_DOMAINS 7-76 -8.560 20  sp|Q8IWV7|UBR1_HUMAN E3 ubiquitin-protein ligase UBR1 OS=Homo sapiens GN=UBR1 PE=1 SV=1 (Range: 1270-1749)
PDB1018 1-77 -31.100 31  3g5c_A mol:protein length:510 ADAM 22
53-299 -13.100 11  5ife_C mol:protein length:1304 Splicing factor 3B subunit 1
PfamA32U 2-299 -13.000 PF15782.5; H2M7V5_ORYLA/1-1933; Gene regulated by oestrogen in breast cancer
SCOP207 2-73 -7.290 21  d1jm1a_ b.33.1.1 (A:) Rieske protein II (SoxF) {Sulfolobus acidocaldarius [TaxId: 2285]}
VFDB 1-115 -33.300 27  [O] KOG3607 Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family
1-258 -26.200 [W] KOG3658 Tumor necrosis factor-alpha-converting enzyme (TACE/ADAM17) and related metalloproteases
14-299 -16.000 10  [O] KOG0802 E3 ubiquitin ligase
15 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 751-930) 180 COG1018 2-179 -20.200 [R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)
CSGID 2-180 -27.400 IDP91949 pneumococcal histidine triad protein E [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100007099 [Streptococcus pneumoniae str. Canada MDR_19A]
H.sapiens 1-174 -28.700 sp|Q92804|RBP56_HUMAN TATA-binding protein-associated factor 2N OS=Homo sapiens GN=TAF15 PE=1 SV=1
2-134 -31.500 sp|P41440|S19A1_HUMAN Folate transporter 1 OS=Homo sapiens GN=SLC19A1 PE=1 SV=3
HGM_OVER 100-180 -4.620 PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF
NEW_HUMAN_DOMAINS 67-125 -4.350 15  sp|Q5VYS4|CM033_HUMAN Uncharacterized protein C13orf33 OS=Homo sapiens GN=C13orf33 PE=2 SV=1 (Range: 70-303)
PDB1018 1-180 -25.500 3jcm_A mol:protein length:2413 Pre-mRNA-splicing factor 8
PfamA32U 2-180 -20.300 12  PF11725.8; Q887C9_PSESM/17-1794; AvrE-family Type-III effector proteins (T3Es)
SCOP207 37-102 -4.280 12  d3s8ga_ f.24.1.1 (A:) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
VFDB 2-179 -20.200 [R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)
16 sp|P11766|ADHX_HUMAN Alcohol dehydrogenase class-3 OS=Homo sapiens GN=ADH5 PE=1 SV=4 374 COG1018 6-374 -109.000 62  [C] COG1062 Zn-dependent alcohol dehydrogenases, class III
CSGID 1-374 -69.300 23  IDP90877 oxidoreductase, zinc-binding dehydrogenase family [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1548c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
H.sapiens 2-374 -110.000 61  sp|P08319|ADH4_HUMAN Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE=1 SV=5
HGM_OVER 93-198 -4.050 14  HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
NEW_HUMAN_DOMAINS 30-109 -4.510 17  sp|O75095|MEGF6_HUMAN Multiple epidermal growth factor-like domains protein 6 OS=Homo sapiens GN=MEGF6 PE=2 SV=4 (Range: 33-94)
PDB1018 1-374 -114.000 100  1mc5_A mol:protein length:374 Alcohol dehydrogenase class III chi chain
PfamA32U 32-160 -35.400 37  PF08240.12; A9CHB7_AGRFC/24-130; Alcohol dehydrogenase GroES-like domain
182-374 -22.900 14  PF16912.5; I7BJ28_NATSJ/144-370; Glucose dehydrogenase C-terminus
202-333 -27.500 21  PF00107.26; ADH_SULSO/182-311; Zinc-binding dehydrogenase
SCOP207 2-200 -77.600 52  d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}
164-339 -57.100 65  d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}
VFDB 6-374 -109.000 62  [C] COG1062 Zn-dependent alcohol dehydrogenases, class III
17 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 1-300) 300 COG1018 2-286 -28.100 [R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)
CSGID 1-202 -30.500 18  IDP91749 Q9DUM3_HHV8 [Human herpesvirus 8]
5-300 -27.100 11  IDP05192 gene: bclA1; putative exosporium glycoprotein [Clostridium difficile 630] CD0332 [Peptoclostridium difficile 630]
H.sapiens 3-300 -23.800 13  sp|P13942|COBA2_HUMAN(removed signalp:1-27) Collagen alpha-2(XI) chain OS=Homo sapiens GN=COL11A2 PE=1 SV=4 (Range: 451-750)
4-271 -30.300 12  sp|Q9UEW3|MARCO_HUMAN Macrophage receptor MARCO OS=Homo sapiens GN=MARCO PE=1 SV=1
HGM_OVER 1-82 -2.400 PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF
NEW_HUMAN_DOMAINS 35-134 -2.280 14  sp|Q86XN7|PRSR1_HUMAN Proline and serine-rich protein 1 OS=Homo sapiens GN=PROSER1 PE=1 SV=2 (Range: 1-221)
PDB1018 2-300 -25.600 5ife_C mol:protein length:1304 Splicing factor 3B subunit 1
PfamA32U 2-254 -15.200 PF11725.8; Q887C9_PSESM/17-1794; AvrE-family Type-III effector proteins (T3Es)
122-298 -13.400 10  PF05934.11; CLCC1_RAT/3-541; Mid-1-related chloride channel (MCLC)
SCOP207 1-33 -1.540 15  d1p94a_ a.43.1.3 (A:) Plasmid partition protein ParG {Salmonella enterica [TaxId: 28901]}
VFDB 2-286 -28.100 [R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)
18 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 151-450) 300 COG1018 2-288 -15.900 [R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)
CSGID 2-291 -19.100 12  IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]
H.sapiens 3-130 -12.000 10  sp|P41440|S19A1_HUMAN Folate transporter 1 OS=Homo sapiens GN=SLC19A1 PE=1 SV=3
151-300 -21.400 100  sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 301-600)
HGM_OVER 262-297 -4.380 HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;
NEW_HUMAN_DOMAINS 250-300 -4.940 19  sp|Q9BX69|CARD6_HUMAN Caspase recruitment domain-containing protein 6 OS=Homo sapiens GN=CARD6 PE=1 SV=2 (Range: 448-668)
PDB1018 2-288 -11.700 10  5ife_C mol:protein length:1304 Splicing factor 3B subunit 1
244-300 -20.500 45  3ihw_A mol:protein length:184 CENTG3
PfamA32U 17-299 -10.400 12  PF11725.8; Q887C9_PSESM/17-1794; AvrE-family Type-III effector proteins (T3Es)
SCOP207 250-300 -17.600 96  d2iwra_ c.37.1.8 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
VFDB 2-288 -15.900 [R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)
19 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 301-600) 300 COG1018 23-257 -11.600 12  [J] KOG0458 Elongation factor 1 alpha
88-300 -61.300 22  [R] KOG0395 Ras-related GTPase
CSGID 53-287 -10.900 13  IDP92713 OmpA domain-containing protein [Pseudomonas putida KT2440] NP_745234 [Pseudomonas putida KT2440]
101-300 -57.600 20  IDP92596 Ras family domain-containing protein [Toxoplasma gondii ME49] TGME49_089680 [Toxoplasma gondii ME49]
H.sapiens 25-296 -71.800 43  sp|Q96P47|AGAP3_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens GN=AGAP3 PE=1 SV=2 (Range: 1-300)
HGM_OVER 107-272 -3.810 12  PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]
NEW_HUMAN_DOMAINS 109-230 -7.390 sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein 9-like OS=Homo sapiens GN=SAMD9L PE=1 SV=2 (Range: 687-863)
PDB1018 92-300 -59.700 16  5ub8_A mol:protein length:222 Likely rab family GTP-binding protein
100-277 -72.900 98  2bmj_A mol:protein length:178 CENTAURIN GAMMA 1
PfamA32U 89-292 -12.800 11  PF05049.13; Q9DCE9_MOUSE/50-412; Interferon-inducible GTPase (IIGP)
108-268 -56.200 28  PF00071.22; RAB9A_CANLF/9-174; Ras family
SCOP207 100-275 -72.500 98  d2iwra_ c.37.1.8 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
VFDB 23-257 -11.600 12  [J] KOG0458 Elongation factor 1 alpha
88-300 -61.300 22  [R] KOG0395 Ras-related GTPase
20 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 451-750) 300 COG1018 1-142 -43.800 20  [R] KOG0394 Ras-related GTPase
1-176 -39.200 21  [T] KOG4252 GTP-binding protein
1-296 -17.300 24  [T] KOG0705 GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains)
CSGID 1-142 -38.600 18  IDP92596 Ras family domain-containing protein [Toxoplasma gondii ME49] TGME49_089680 [Toxoplasma gondii ME49]
H.sapiens 17-300 -88.800 53  sp|Q96P47|AGAP3_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens GN=AGAP3 PE=1 SV=2 (Range: 151-450)
HGM_OVER 27-107 -4.030 16  PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]
NEW_HUMAN_DOMAINS 26-85 -5.760 13  tr|A6NNV8|A6NNV8_HUMAN Uncharacterized protein OS=Homo sapiens GN=B3GALNT2 PE=4 SV=3 (Range: 41-158)
PDB1018 1-127 -57.900 100  2bmj_A mol:protein length:178 CENTAURIN GAMMA 1
PfamA32U 1-118 -45.200 25  PF00071.22; RAB9A_CANLF/9-174; Ras family
SCOP207 1-125 -57.500 100  d2iwra_ c.37.1.8 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
VFDB 1-142 -43.800 20  [R] KOG0394 Ras-related GTPase
1-176 -39.200 21  [T] KOG4252 GTP-binding protein
1-296 -17.300 24  [T] KOG0705 GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.