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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 55674next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 sp|Q29940|1B59_HUMAN(removed signalp:1-24) HLA class I histocompatibility antigen, B-59 alpha chain OS=Homo sapiens GN=HLA-B PE=2 SV=1 338 CSGID 94-338 -26.300 CPX_91747_91753 Complex of Q8WLQ7_HUMAN with TSST_STAAU [Undefined organism]
2 sp|P08908|5HT1A_HUMAN 5-hydroxytryptamine receptor 1A OS=Homo sapiens GN=HTR1A PE=1 SV=3 422 CSGID 37-235 -8.280 13  IDP91400 ABC-type amino acid transport system, permease component [Vibrio vulnificus CMCP6] VV1_1002 [Vibrio vulnificus CMCP6]
3 sp|Q15758|AAAT_HUMAN Neutral amino acid transporter B(0) OS=Homo sapiens GN=SLC1A5 PE=1 SV=2 541 CSGID 58-481 -7.270 14  IDP91361 NhaP-type Na+/H+ and K+/H+ antiporters [Vibrio vulnificus CMCP6] VV1_2840 [Vibrio vulnificus CMCP6]
4 sp|P61221|ABCE1_HUMAN ATP-binding cassette sub-family E member 1 OS=Homo sapiens GN=ABCE1 PE=1 SV=1 599 CSGID 68-579 -73.000 18  IDP01301 peptide ABC transporter, ATP-binding protein VC0170 [Vibrio cholerae O1 biovar El Tor str. N16961]
5 sp|P07108|ACBP_HUMAN Acyl-CoA-binding protein OS=Homo sapiens GN=DBI PE=1 SV=2 87 CSGID 1-80 -13.000 41  IDP04044 gene: fadB/acbP; fusion product of 3-hydroxacyl-CoA dehydrogenase and acyl-CoA-binding protein [Francisella tularensis subsp. tularensis SCHU S4] FTT1530 [Francisella tularensis subsp. tularensis SCHU S4]
6 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 1-300) 300 CSGID 4-300 -32.200 13  IDP90795 gene: fadE; acyl-CoA dehydrogenase [Yersinia pestis CO92] YPO3244 [Yersinia pestis CO92]
41-300 -39.000 16  IDP02763 acyl-CoA dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA2547 [Bacillus anthracis str. `Ames Ancestor`]
7 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 151-450) 300 CSGID 1-300 -43.700 23  IDP02763 acyl-CoA dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA2547 [Bacillus anthracis str. `Ames Ancestor`]
8 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 301-600) 300 CSGID 1-168 -26.600 19  IDP01084 gene: aidB; putative acyl-CoA dehydrogenase STM4377 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
1-296 -24.000 15  IDP04432 acyl-CoA dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA5246 [Bacillus anthracis str. `Ames Ancestor`]
9 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 451-700) 250 CSGID 11-232 -5.890 11  IDP00523 gene: ampH; beta-lactamase/D-alanine carboxypeptidase YPO1224 [Yersinia pestis CO92]
10 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 1-300) 300 CSGID 30-276 -6.380 15  IDP02312 FtsK/SpoIIIE family protein [Bacillus anthracis str. `Ames Ancestor`] GBAA2190 [Bacillus anthracis str. `Ames Ancestor`]
11 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 151-450) 300 CSGID 34-234 -19.300 12  IDP02828 hypothetical protein GBAA4243 [Bacillus anthracis str. `Ames Ancestor`] GBAA4243 [Bacillus anthracis str. `Ames Ancestor`]
12 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 301-600) 300 CSGID 1-104 -13.100 14  IDP02828 hypothetical protein GBAA4243 [Bacillus anthracis str. `Ames Ancestor`] GBAA4243 [Bacillus anthracis str. `Ames Ancestor`]
8-71 -13.900 20  IDP02151 hypothetical protein GBAA3159 [Bacillus anthracis str. `Ames Ancestor`] GBAA3159 [Bacillus anthracis str. `Ames Ancestor`]
13 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 451-750) 300 CSGID 155-263 -10.800 12  IDP90175 gene: VGF; CPXV021 protein or CPXV VGF protein AAM13468.1 [Cowpox virus (Brighton Red)]
14 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 601-900) 300 CSGID 1-300 -10.500 IDP91542 3`,5`-cyclic phosphodiesterase, putative [Toxoplasma gondii ME49] TGME49_080410 [Toxoplasma gondii ME49]
2-67 -10.800 21  IDP91731 gene: EGFL7; epidermal growth factor-like protein 7 [Homo sapiens] NP_958854 [Homo sapiens]
109-300 -14.700 IDP91949 pneumococcal histidine triad protein E [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100007099 [Streptococcus pneumoniae str. Canada MDR_19A]
15 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 751-930) 180 CSGID 2-180 -27.400 IDP91949 pneumococcal histidine triad protein E [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100007099 [Streptococcus pneumoniae str. Canada MDR_19A]
16 sp|P11766|ADHX_HUMAN Alcohol dehydrogenase class-3 OS=Homo sapiens GN=ADH5 PE=1 SV=4 374 CSGID 1-374 -69.300 23  IDP90877 oxidoreductase, zinc-binding dehydrogenase family [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1548c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
17 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 1-300) 300 CSGID 1-202 -30.500 18  IDP91749 Q9DUM3_HHV8 [Human herpesvirus 8]
5-300 -27.100 11  IDP05192 gene: bclA1; putative exosporium glycoprotein [Clostridium difficile 630] CD0332 [Peptoclostridium difficile 630]
18 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 151-450) 300 CSGID 2-291 -19.100 12  IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]
19 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 301-600) 300 CSGID 53-287 -10.900 13  IDP92713 OmpA domain-containing protein [Pseudomonas putida KT2440] NP_745234 [Pseudomonas putida KT2440]
101-300 -57.600 20  IDP92596 Ras family domain-containing protein [Toxoplasma gondii ME49] TGME49_089680 [Toxoplasma gondii ME49]
20 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 451-750) 300 CSGID 1-142 -38.600 18  IDP92596 Ras family domain-containing protein [Toxoplasma gondii ME49] TGME49_089680 [Toxoplasma gondii ME49]


FFAS is supported by the NIH grant R01-GM087218-01
1 2 5 3 1 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.