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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 55674next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 sp|Q29940|1B59_HUMAN(removed signalp:1-24) HLA class I histocompatibility antigen, B-59 alpha chain OS=Homo sapiens GN=HLA-B PE=2 SV=1 338 SCOP207 1-181 -63.600 88  d1k5na2 d.19.1.1 (A:1-181) Class I MHC, alpha-1 and alpha-2 domains {Human (Homo sapiens), HLA-B27 [TaxId: 9606]}
182-276 -54.500 100  d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}
2 sp|P08908|5HT1A_HUMAN 5-hydroxytryptamine receptor 1A OS=Homo sapiens GN=HTR1A PE=1 SV=3 422 SCOP207 1-422 -75.600 18  d2g87a_ f.13.1.2 (A:) automated matches {Cow (Bos taurus) [TaxId: 9913]}
32-415 -90.800 38  d4bvna_ f.13.1.3 (A:) automated matches {Turkey (Meleagris gallopavo) [TaxId: 9103]}
3 sp|Q15758|AAAT_HUMAN Neutral amino acid transporter B(0) OS=Homo sapiens GN=SLC1A5 PE=1 SV=2 541 SCOP207 53-486 -85.400 29  d2nwla_ f.49.1.1 (A:) automated matches {Pyrococcus horikoshii [TaxId: 53953]}
4 sp|P61221|ABCE1_HUMAN ATP-binding cassette sub-family E member 1 OS=Homo sapiens GN=ABCE1 PE=1 SV=1 599 SCOP207 7-74 -10.500 25  d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}
69-311 -46.200 16  d3tuic1 c.37.1.12 (C:1-240) automated matches {Escherichia coli K-12 [TaxId: 83333]}
104-533 -9.760 13  d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
354-556 -42.300 18  d2nq2c_ c.37.1.0 (C:) automated matches {Haemophilus influenzae [TaxId: 727]}
5 sp|P07108|ACBP_HUMAN Acyl-CoA-binding protein OS=Homo sapiens GN=DBI PE=1 SV=2 87 SCOP207 2-87 -63.000 100  d2cb8a_ a.11.1.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
6 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 1-300) 300 SCOP207 17-289 -103.000 35  d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
7 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 151-450) 300 SCOP207 1-139 -74.600 50  d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
148-300 -60.400 38  d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
8 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 301-600) 300 SCOP207 1-188 -85.900 35  d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
195-300 -24.000 20  d1w07a2 a.29.3.2 (A:462-659) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
9 sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 (Range: 451-700) 250 SCOP207 1-37 -12.700 21  d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
43-250 -68.500 22  d1w07a2 a.29.3.2 (A:462-659) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
10 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 1-300) 300 SCOP207 183-300 -57.600 50  d1r55a1 d.92.1.9 (A:208-409) ADAM33 {Human (Homo sapiens) [TaxId: 9606]}
11 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 151-450) 300 SCOP207 33-233 -83.300 54  d1r55a1 d.92.1.9 (A:208-409) ADAM33 {Human (Homo sapiens) [TaxId: 9606]}
252-300 -22.600 54  d4r5ra_ g.20.1.1 (A:) Kistrin (rhodostomin) {Agkistrodon rhodostoma [TaxId: 8717]}
12 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 301-600) 300 SCOP207 1-83 -32.800 62  d1r55a1 d.92.1.9 (A:208-409) ADAM33 {Human (Homo sapiens) [TaxId: 9606]}
102-172 -29.700 46  d4r5ra_ g.20.1.1 (A:) Kistrin (rhodostomin) {Agkistrodon rhodostoma [TaxId: 8717]}
13 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 451-750) 300 SCOP207 1-29 -11.400 34  d2echa_ g.20.1.1 (A:) Echistatin {Saw-scaled viper (Echis carinatus) [TaxId: 40353]}
14 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 601-900) 300 SCOP207 2-73 -7.290 21  d1jm1a_ b.33.1.1 (A:) Rieske protein II (SoxF) {Sulfolobus acidocaldarius [TaxId: 2285]}
15 sp|Q9H013|ADA19_HUMAN(removed signalp:1-25) Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3 (Range: 751-930) 180 SCOP207 37-102 -4.280 12  d3s8ga_ f.24.1.1 (A:) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
16 sp|P11766|ADHX_HUMAN Alcohol dehydrogenase class-3 OS=Homo sapiens GN=ADH5 PE=1 SV=4 374 SCOP207 2-200 -77.600 52  d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}
164-339 -57.100 65  d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}
17 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 1-300) 300 SCOP207 1-33 -1.540 15  d1p94a_ a.43.1.3 (A:) Plasmid partition protein ParG {Salmonella enterica [TaxId: 28901]}
18 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 151-450) 300 SCOP207 250-300 -17.600 96  d2iwra_ c.37.1.8 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
19 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 301-600) 300 SCOP207 100-275 -72.500 98  d2iwra_ c.37.1.8 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
20 sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2 (Range: 451-750) 300 SCOP207 1-125 -57.500 100  d2iwra_ c.37.1.8 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.