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# Query Length Result vs. Range Score %id Covered by template(s)
1 HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508; 217 COG1018 1-212 -8.200 [R] COG4105 DNA uptake lipoprotein
CSGID 10-203 -9.570 15  IDP91435 DNA uptake lipoprotein [Vibrio vulnificus CMCP6] VV1_0485 [Vibrio vulnificus CMCP6]
H.sapiens 104-195 -10.800 sp|P43405|KSYK_HUMAN Tyrosine-protein kinase SYK OS=Homo sapiens GN=SYK PE=1 SV=1 (Range: 151-450)
HGM_OVER 1-217 -24.300 13  PB001404 Q2S5L8_SALRD/1-256 PB001404; Pfam-B_1404;
NEW_HUMAN_DOMAINS 119-211 -6.760 sp|Q6ZVS7|F183B_HUMAN Protein FAM183B OS=Homo sapiens GN=FAM183B PE=2 SV=2 (Range: 1-135)
PDB1018 16-217 -72.400 18  4l7t_A mol:protein length:523 NanU sialic acid binding protein
PfamA32U 29-217 -45.100 17  PF14322.6; R6MDM1_9BACE/22-224; Starch-binding associating with outer membrane
SCOP207 24-217 -48.400 14  d3ckca_ a.118.8.6 (A:) Starch utilization system protein SusD {Bacteroides thetaiotaomicron [TaxId: 818]}
VFDB 1-212 -8.200 [R] COG4105 DNA uptake lipoprotein
2 HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920; 360 COG1018 61-171 -10.000 [U] KOG3317 Translocon-associated complex TRAP, beta subunit
CSGID 1-186 -45.600 24  IDP04361 gene: bglB; putative beta-glucosidase [Yersinia pestis CO92] YPO2803 [Yersinia pestis CO92]
H.sapiens 63-143 -9.360 11  sp|P43308|SSRB_HUMAN(removed signalp:1-17) Translocon-associated protein subunit beta OS=Homo sapiens GN=SSR2 PE=1 SV=1
HGM_OVER 61-183 -9.730 10  HGC01213 gi|163579070|dbj|BABE01006032.1|2.0 TMP01709;
NEW_HUMAN_DOMAINS 65-157 -6.250 14  sp|Q14596|NBR1_HUMAN Next to BRCA1 gene 1 protein OS=Homo sapiens GN=NBR1 PE=1 SV=3 (Range: 371-477)
PDB1018 1-355 -56.900 17  5k6l_A mol:protein length:921 B-GLUCOSIDASE
PfamA32U 41-168 -9.820 14  PF16116.5; R6Y5S7_9BACT/235-498; Domain of unknown function (DUF4832 topsan)
91-171 -24.800 22  PF14310.6; Q2TYS6_ASPOR/716-785; Fibronectin type III-like domain
SCOP207 1-46 -15.500 23  d2x42a2 c.23.11.1 (A:320-599) Beta-glucosidase middle domain {Thermotoga neapolitana [TaxId: 309803]}
47-185 -47.400 27  d2x42a3 b.1.31.1 (A:600-721) Beta-glucosidase C-terminal domain {Thermotoga neapolitana [TaxId: 309803]}
VFDB 61-171 -10.000 [U] KOG3317 Translocon-associated complex TRAP, beta subunit
3 HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000; 81 COG1018 1-63 -7.140 15  [S] COG3007 Uncharacterized paraquat-inducible protein B
CSGID 1-63 -6.640 16  IDP92620 trans-2-enoyl-CoA reductase [Vibrio cholerae O395] VC0395_A1339 [Vibrio cholerae O395]
H.sapiens 1-81 -7.710 14  sp|O60673|DPOLZ_HUMAN DNA polymerase zeta catalytic subunit OS=Homo sapiens GN=REV3L PE=1 SV=2 (Range: 2401-2700)
HGM_OVER 1-81 -2.680 18  PB017610 Q11T14_CYTH3/22-188 PB017610; Pfam-B_17610;
NEW_HUMAN_DOMAINS 7-49 -6.660 11  tr|B9ZVK6|B9ZVK6_HUMAN Uncharacterized protein OS=Homo sapiens GN=C10orf53 PE=4 SV=1 (Range: 1-77)
PDB1018 1-81 -22.200 43  5t3r_D mol:protein length:1041 SusC homolog
PfamA32U 1-63 -8.000 10  PF07055.12; C6CTR2_PAESJ/323-385; Enoyl reductase FAD binding domain
SCOP207 4-50 -6.730 25  d2eyqa1 b.34.18.1 (A:466-545) Transcription-repair coupling factor, RRCF, middle domain {Escherichia coli [TaxId: 562]}
VFDB 1-63 -7.140 15  [S] COG3007 Uncharacterized paraquat-inducible protein B
4 HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074; 227 COG1018 2-150 -6.530 10  [P] COG0783 DNA-binding ferritin-like protein (oxidative damage protectant)
CSGID 2-150 -6.110 IDP01318 DPS family protein VC0139 [Vibrio cholerae O1 biovar El Tor str. N16961]
H.sapiens 1-163 -6.930 sp|Q9HD47|MOG1_HUMAN Ran guanine nucleotide release factor OS=Homo sapiens GN=RANGRF PE=1 SV=1
HGM_OVER 10-225 -3.720 10  PB034679 gi|150005530|ref|YP_001300274.1| hypothetical protein BVU_3014 [Bacteroides vulgatus ATCC 8482]gi|149933954|gb|ABR40652.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
NEW_HUMAN_DOMAINS 2-55 -6.210 14  sp|Q8N614|TM156_HUMAN Transmembrane protein 156 OS=Homo sapiens GN=TMEM156 PE=2 SV=2 (Range: 23-89)
PDB1018 2-163 -6.990 2c41_A mol:protein length:158 DPS FAMILY DNA-BINDING STRESS RESPONSE PROTEIN
PfamA32U 1-57 -6.770 PF00447.17; U5GYQ9_USTV1/99-205; HSF-type DNA-binding
SCOP207 3-150 -6.340 d2cf7a_ a.25.1.1 (A:) automated matches {Streptococcus suis [TaxId: 1307]}
VFDB 2-150 -6.530 10  [P] COG0783 DNA-binding ferritin-like protein (oxidative damage protectant)
5 HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833; 173 COG1018 1-173 -40.100 15  [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes
CSGID 1-173 -40.200 11  IDP93888 hipa protein [Yersinia enterocolitica subsp. palearctica Y11] YP_006006247 [Yersinia enterocolitica subsp. palearctica Y11]
H.sapiens 73-152 -6.650 18  sp|Q502W6|VWA3B_HUMAN von Willebrand factor A domain-containing protein 3B OS=Homo sapiens GN=VWA3B PE=2 SV=3 (Range: 601-900)
HGM_OVER 72-146 -4.860 13  PB045813 Q5LF03_BACFN/1-275 PB045813; Pfam-B_45813;
NEW_HUMAN_DOMAINS 74-170 -5.550 11  sp|Q9Y5B6|GCFC1_HUMAN GC-rich sequence DNA-binding factor 1 OS=Homo sapiens GN=GCFC1 PE=1 SV=2 (Range: 807-917)
PDB1018 1-173 -45.500 13  4pu3_A mol:protein length:454 Toxin-antitoxin system toxin HipA family
PfamA32U 6-121 -60.000 39  PF13657.6; D4J1A9_BUTFI/5-120; HipA N-terminal domain
SCOP207 5-173 -40.000 15  d3dnua_ d.144.1.7 (A:) Multidrug tolerance (MDT) protein HipA N-terminal domain {Escherichia coli K-12 [TaxId: 83333]}
VFDB 1-173 -40.100 15  [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes
6 HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473; 223 COG1018 24-220 -19.900 14  [K] COG5340 Predicted transcriptional regulator
CSGID 34-219 -6.290 IDP92056 orotate phosphoribosyltransferase, putative [Toxoplasma gondii ME49] TGME49_059660 [Toxoplasma gondii ME49]
H.sapiens 139-222 -7.730 11  sp|P57730|CAR18_HUMAN Caspase recruitment domain-containing protein 18 OS=Homo sapiens GN=CARD18 PE=1 SV=1
HGM_OVER 1-208 -13.200 10  PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;
NEW_HUMAN_DOMAINS 133-209 -5.970 sp|Q6ZP82|CC141_HUMAN Coiled-coil domain-containing protein 141 OS=Homo sapiens GN=CCDC141 PE=1 SV=1 (Range: 35-125)
PDB1018 4-194 -16.300 14  1zel_A mol:protein length:298 hypothetical protein Rv2827c
PfamA32U 5-91 -23.400 PF17194.4; K9SQ68_9CYAN/5-97; Transcriptional regulator, AbiEi antitoxin N-terminal domain
71-192 -13.100 16  PF09407.10; B9M298_GEODF/67-209; AbiEi antitoxin C-terminal domain
SCOP207 66-211 -13.000 15  d1zela2 d.377.1.1 (A:83-294) Hypothetical protein Rv2827c {Mycobacterium tuberculosis [TaxId: 1773]}
VFDB 24-220 -19.900 14  [K] COG5340 Predicted transcriptional regulator
7 HGC00248 gi|162576253|dbj|BAAV01029229.1|2.0 TMP00024; 121 COG1018 76-121 -7.540 17  [R] COG5545 Predicted P-loop ATPase and inactivated derivatives
CSGID 1-121 -6.090 IDP91498 translocation protein in type III secretion [Vibrio parahaemolyticus RIMD 2210633] VP1675 [Vibrio parahaemolyticus RIMD 2210633]
H.sapiens 33-120 -7.940 10  sp|O94812|BAIP3_HUMAN BAI1-associated protein 3 OS=Homo sapiens GN=BAIAP3 PE=1 SV=2 (Range: 601-900)
HGM_OVER 96-121 -3.020 23  HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;
NEW_HUMAN_DOMAINS 93-121 -6.410 20  sp|Q2M3C7|SPKAP_HUMAN A-kinase anchor protein SPHKAP OS=Homo sapiens GN=SPHKAP PE=1 SV=1 (Range: 552-679)
PDB1018 31-120 -7.710 2m0q_A mol:protein length:123 Potassium voltage-gated channel subfamily E member 2
PfamA32U 96-121 -7.250 PF11078.8; E0VMZ7_PEDHC/97-177; Optomotor-blind protein N-terminal region
SCOP207 32-114 -6.900 d1n4wa2 d.16.1.1 (A:319-450) Cholesterol oxidase {Streptomyces sp. [TaxId: 1931]}
VFDB 76-121 -7.540 17  [R] COG5545 Predicted P-loop ATPase and inactivated derivatives
8 HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066; 164 COG1018 1-117 -6.990 17  [G] COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID
CSGID 3-127 -6.430 15  IDP01512 anthranilate synthase component II VC1173 [Vibrio cholerae O1 biovar El Tor str. N16961]
H.sapiens 2-164 -6.170 16  sp|P49915|GUAA_HUMAN GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens GN=GMPS PE=1 SV=1 (Range: 1-300)
HGM_OVER 2-101 -3.950 10  PB029229 gi|150007903|ref|YP_001302646.1| hypothetical protein BDI_1263 [Parabacteroides distasonis ATCC 8503]gi|149936327|gb|ABR43024.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]
NEW_HUMAN_DOMAINS 14-114 -5.430 14  tr|C9J2F8|C9J2F8_HUMAN HCG22882, isoform CRA_a OS=Homo sapiens GN=PSMG4 PE=4 SV=1 (Range: 1-102)
PDB1018 1-127 -6.500 13  1i1q_B mol:protein length:192 ANTHRANILATE SYNTHASE COMPONENT II
PfamA32U 16-106 -45.200 52  PF12957.7; R6MF37_9FIRM/540-630; Domain of unknown function (DUF3846 topsan)
SCOP207 8-110 -6.890 10  d3w5ha2 c.25.1.1 (A:1126-1272) cytochrome b5 reductase {Pig (Sus scrofa), liver [TaxId: 9823]}
VFDB 1-117 -6.990 17  [G] COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID
9 HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178; 122 COG1018 16-109 -5.830 10  [M] COG0818 Diacylglycerol kinase
CSGID 32-119 -5.040 11  IDP95267 N-acetyl-anhydromuranmyl-L-alanine amidase [Acinetobacter baumannii ATCC 17978] YP_001083142 [Acinetobacter baumannii ATCC 17978]
H.sapiens 1-122 -6.790 17  sp|Q9P266|K1462_HUMAN Uncharacterized protein KIAA1462 OS=Homo sapiens GN=KIAA1462 PE=1 SV=3 (Range: 451-750)
HGM_OVER 1-95 -10.300 21  HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;
NEW_HUMAN_DOMAINS 47-119 -6.520 13  sp|Q96AE7|TTC17_HUMAN Tetratricopeptide repeat protein 17 OS=Homo sapiens GN=TTC17 PE=1 SV=1 (Range: 1-155)
PDB1018 2-49 -6.670 16  5aj3_n mol:protein length:199 MITORIBOSOMAL PROTEIN MS38, MRPS38
PfamA32U 6-89 -41.600 32  PF12958.7; D4JA63_9FIRM/5-85; Protein of unknown function (DUF3847 topsan)
SCOP207 3-63 -7.380 d1ljoa1 b.38.1.1 (A:3-75) Archaeal homoheptameric Sm protein {Archaeoglobus fulgidus, AF-Sm2 [TaxId: 2234]}
VFDB 16-109 -5.830 10  [M] COG0818 Diacylglycerol kinase
10 HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304; 200 COG1018 4-200 -44.900 41  [R] COG3943 Virulence protein
CSGID 1-197 -6.730 10  IDP95146 hypothetical protein KP1_2907 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002919622 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
H.sapiens 8-200 -7.620 12  sp|P35573|GDE_HUMAN Glycogen debranching enzyme OS=Homo sapiens GN=AGL PE=1 SV=3 (Range: 601-900)
HGM_OVER 9-38 -3.730 16  PB011051 Q8A0P0_BACTN/1-227 PB011051; Pfam-B_11051;
NEW_HUMAN_DOMAINS 6-157 -5.870 11  sp|Q8IXR5|F178B_HUMAN Protein FAM178B OS=Homo sapiens GN=FAM178B PE=2 SV=2 (Range: 390-540)
PDB1018 8-200 -7.480 14  4d10_G mol:protein length:222 COP9 SIGNALOSOME COMPLEX SUBUNIT 7A
PfamA32U 3-183 -43.300 43  PF13310.6; L0KVS2_METHD/69-326; Virulence protein RhuM family
SCOP207 19-181 -6.560 13  d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 4-200 -44.900 41  [R] COG3943 Virulence protein
11 HGC00422 gi|163631722|dbj|BABG01004545.1|2.0 TMP00397; 274 COG1018 126-230 -5.340 15  [S] COG5652 Predicted integral membrane protein
CSGID 106-218 -4.870 IDP95010 Set165a_018 [Vibrio cholerae O1 biovar El Tor]
H.sapiens 6-242 -7.380 sp|Q8WX92|NELFB_HUMAN Negative elongation factor B OS=Homo sapiens GN=COBRA1 PE=1 SV=1
HGM_OVER 174-274 -4.430 PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;
NEW_HUMAN_DOMAINS 139-254 -6.390 sp|Q68CP9|ARID2_HUMAN AT-rich interactive domain-containing protein 2 OS=Homo sapiens GN=ARID2 PE=1 SV=2 (Range: 124-277)
PDB1018 145-201 -9.160 11  2rng_A mol:protein length:79 Big defensin
PfamA32U 8-102 -37.100 28  PF12959.7; R5RLB6_9FIRM/10-104; Protein of unknown function (DUF3848 topsan)
113-235 -69.000 40  PF12960.7; L0F7B8_DESDL/8-136; Protein of unknown function (DUF3849 topsan)
SCOP207 98-241 -6.570 12  d1tzva_ a.79.1.1 (A:) Antitermination factor NusB {Thermotoga maritima [TaxId: 2336]}
VFDB 126-230 -5.340 15  [S] COG5652 Predicted integral membrane protein
12 HGC00429 gi|162734516|dbj|BAAZ01029480.1|1.0 TMP00411; 255 COG1018 1-254 -6.130 10  [J] KOG0875 60S ribosomal protein L5
CSGID 5-134 -6.410 IDP05737 hypothetical protein CD1990 [Clostridium difficile 630] CD1990 [Peptoclostridium difficile 630]
H.sapiens 12-150 -6.830 11  sp|Q6PL24|TMED8_HUMAN Protein TMED8 OS=Homo sapiens GN=TMED8 PE=1 SV=1
HGM_OVER 191-255 -5.220 PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]
NEW_HUMAN_DOMAINS 198-255 -5.610 22  sp|Q9NQC3|RTN4_HUMAN Reticulon-4 OS=Homo sapiens GN=RTN4 PE=1 SV=2 (Range: 530-626)
PDB1018 5-63 -6.360 11  2krs_A mol:protein length:74 Probable enterotoxin
PfamA32U 86-155 -40.200 44  PF18789.1; A0A1V4IJF0_9CLOT/81-149; Defence against restriction A C-terminal
SCOP207 2-52 -5.630 d1h6ta1 b.1.18.15 (A:241-321) Internalin B {Listeria monocytogenes [TaxId: 1639]}
VFDB 1-254 -6.130 10  [J] KOG0875 60S ribosomal protein L5
13 HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523; 127 COG1018 1-119 -5.680 11  [R] KOG2714 SETA binding protein SB1 and related proteins, contain BTB/POZ domain
CSGID 18-96 -6.340 22  IDP06052 hypothetical protein jhp0557 [Helicobacter pylori J99] NP_223275 [Helicobacter pylori J99]
H.sapiens 104-125 -8.110 13  sp|Q9HCK8|CHD8_HUMAN Chromodomain-helicase-DNA-binding protein 8 OS=Homo sapiens GN=CHD8 PE=1 SV=5 (Range: 1951-2250)
HGM_OVER 56-127 -5.440 15  PB008806 Q5L9W8_BACFN/1-127 PB008806; Pfam-B_8806;
NEW_HUMAN_DOMAINS 28-127 -6.750 10  sp|Q5T848|GP158_HUMAN Probable G-protein coupled receptor 158 OS=Homo sapiens GN=GPR158 PE=1 SV=1 (Range: 121-227)
PDB1018 10-125 -7.230 11  3wpu_A mol:protein length:542 Beta-fructofuranosidase
PfamA32U 3-127 -96.500 61  PF12962.7; R5QVW0_9FIRM/1-126; Protein of unknown function (DUF3851 topsan)
SCOP207 18-92 -6.920 d1u5tb1 a.4.5.54 (B:396-489) Vacuolar protein sorting-associated protein VPS36 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 1-119 -5.680 11  [R] KOG2714 SETA binding protein SB1 and related proteins, contain BTB/POZ domain
14 HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561; 136 COG1018 42-119 -6.920 14  [O] COG5380 Lipase chaperone
CSGID 8-87 -6.370 17  IDP05509 gene: spoIIIJ2; stage III sporulation protein J [Bacillus anthracis str. Ames] BA_5736 [Bacillus anthracis str. Ames]
H.sapiens 16-90 -9.320 16  sp|Q9UBL0|ARP21_HUMAN cAMP-regulated phosphoprotein 21 OS=Homo sapiens GN=ARPP21 PE=1 SV=2 (Range: 301-600)
HGM_OVER 33-127 -10.300 21  HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178;
NEW_HUMAN_DOMAINS 31-76 -5.530 17  sp|Q9Y238|DLEC1_HUMAN Deleted in lung and esophageal cancer protein 1 OS=Homo sapiens GN=DLEC1 PE=2 SV=2 (Range: 89-213)
PDB1018 32-118 -9.190 11  1kib_A mol:protein length:89 cytochrome c6
PfamA32U 43-95 -9.360 30  PF12958.7; D4JA63_9FIRM/5-85; Protein of unknown function (DUF3847 topsan)
SCOP207 30-120 -7.500 11  d1ctja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Monoraphidium braunii [TaxId: 34112]}
VFDB 42-119 -6.920 14  [O] COG5380 Lipase chaperone
15 HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574; 92 COG1018 1-91 -26.600 19  [S] COG1598 Uncharacterized conserved protein
CSGID 55-86 -5.050 18  IDP04078 gene: YPCD1.09c; hypothetical protein YPCD1.09c [Yersinia pestis CO92] YPCD1.09c [Yersinia pestis CO92]
H.sapiens 1-37 -6.190 27  sp|P24386|RAE1_HUMAN Rab proteins geranylgeranyltransferase component A 1 OS=Homo sapiens GN=CHM PE=1 SV=3 (Range: 451-653)
HGM_OVER 58-92 -4.170 14  PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]
NEW_HUMAN_DOMAINS 1-32 -5.710 25  sp|O95072|REC8_HUMAN Meiotic recombination protein REC8 homolog OS=Homo sapiens GN=REC8 PE=2 SV=1 (Range: 112-162)
PDB1018 1-90 -39.000 30  5yrz_A mol:protein length:152 HicB
PfamA32U 1-85 -32.800 21  PF15919.5; E1VAV2_HALED/3-129; HicB_like antitoxin of bacterial toxin-antitoxin system
SCOP207 57-90 -12.800 14  d2cpga_ a.43.1.3 (A:) Transcriptional repressor CopG {Streptococcus agalactiae [TaxId: 1311]}
VFDB 1-91 -26.600 19  [S] COG1598 Uncharacterized conserved protein
16 HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580; 203 COG1018 12-184 -11.200 12  [R] COG4914 Predicted nucleotidyltransferase
CSGID 15-84 -9.750 12  IDP95122 streptomycin 3``-adenylyltransferase [Staphylococcus aureus subsp. aureus CIG1242] EHT28025 [Staphylococcus aureus subsp. aureus CIG1242]
H.sapiens 1-195 -11.200 12  sp|Q9NRJ5|PAPOB_HUMAN Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1 (Range: 1-300)
HGM_OVER 2-201 -4.710 11  PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;
NEW_HUMAN_DOMAINS 40-186 -5.160 sp|A4D0S4|LAMB4_HUMAN Laminin subunit beta-4 OS=Homo sapiens GN=LAMB4 PE=2 SV=1 (Range: 585-721)
PDB1018 2-176 -10.900 12  4nkt_A mol:protein length:341 Poly(A) RNA polymerase protein cid1
PfamA32U 1-197 -11.100 10  PF04928.17; A0A015KEX5_9GLOM/12-355; Poly(A) polymerase central domain
27-177 -18.400 11  PF14091.6; B0C3V0_ACAM1/8-156; Domain of unknown function (DUF4269 topsan)
SCOP207 4-68 -10.200 12  d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}
VFDB 12-184 -11.200 12  [R] COG4914 Predicted nucleotidyltransferase
17 HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636; 115 COG1018 12-112 -7.940 17  [S] KOG4610 Uncharacterized conserved protein
CSGID 1-56 -9.600 21  IDP05521 putative cell surface protein [Clostridium difficile 630] CD1858 [Peptoclostridium difficile 630]
H.sapiens 16-113 -9.140 21  sp|Q9BSN7|TM204_HUMAN(removed signalp:1-25) Transmembrane protein 204 OS=Homo sapiens GN=TMEM204 PE=2 SV=1
HGM_OVER 1-109 -8.770 PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;
NEW_HUMAN_DOMAINS 32-114 -6.550 15  tr|F8VZC6|F8VZC6_HUMAN Uncharacterized protein OS=Homo sapiens GN=PMEL PE=4 SV=1 (Range: 25-162)
PDB1018 24-106 -6.840 10  1ux6_A mol:protein length:350 THROMBOSPONDIN-1
PfamA32U 8-113 -80.000 65  PF12963.7; R7EKX0_9FIRM/6-110; Protein of unknown function (DUF3852 topsan)
SCOP207 1-58 -6.660 17  d2ctoa1 a.21.1.0 (A:8-87) automated matches {Human (Homo sapiens) [TaxId: 9606]}
VFDB 12-112 -7.940 17  [S] KOG4610 Uncharacterized conserved protein
18 HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669; 125 COG1018 41-109 -15.800 10  [K] COG3311 Predicted transcriptional regulator
CSGID 2-124 -18.800 10  IDP90419 gene: euo; CHLPS Euo Protein [Chlamydia trachomatis D/UW-3/CX] CT_446 [Chlamydia trachomatis D/UW-3/CX]
H.sapiens 50-123 -6.030 12  sp|P26358|DNMT1_HUMAN DNA (cytosine-5)-methyltransferase 1 OS=Homo sapiens GN=DNMT1 PE=1 SV=2 (Range: 1351-1616)
HGM_OVER 12-123 -3.920 12  HGC00870 gi|163286116|dbj|BABD01024572.1|2.0 TMP01154;
NEW_HUMAN_DOMAINS 5-34 -5.210 16  sp|Q9BZV3|IMPG2_HUMAN Interphotoreceptor matrix proteoglycan 2 OS=Homo sapiens GN=IMPG2 PE=1 SV=3 (Range: 335-419)
PDB1018 55-118 -27.000 20  1j9i_A mol:protein length:68 TERMINASE SMALL SUBUNIT
PfamA32U 7-106 -45.400 27  PF12964.7; D6D3K5_9BACE/4-98; Protein of unknown function (DUF3853 topsan)
SCOP207 55-118 -27.000 20  d1j9ia_ a.6.1.5 (A:) Terminase gpNU1 subunit domain {Bacteriophage lambda [TaxId: 10710]}
VFDB 41-109 -15.800 10  [K] COG3311 Predicted transcriptional regulator
19 HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679; 172 COG1018 1-145 -11.200 [M] COG4571 Outer membrane protease
CSGID 1-145 -11.400 IDP02013 gene: pgtE; outer membrane protease [Salmonella typhimurium LT2] STM2395 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
H.sapiens 135-172 -6.940 15  sp|P56385|ATP5I_HUMAN ATP synthase subunit e, mitochondrial OS=Homo sapiens GN=ATP5I PE=1 SV=2
HGM_OVER 131-169 -4.540 20  PB012954 Q5LF97_BACFN/1-383 PB012954; Pfam-B_12954;
NEW_HUMAN_DOMAINS 140-172 -6.350 12  sp|Q9NVX0|HAUS2_HUMAN HAUS augmin-like complex subunit 2 OS=Homo sapiens GN=HAUS2 PE=1 SV=1 (Range: 1-90)
PDB1018 1-148 -14.700 4dcb_A mol:protein length:297 Coagulase/fibrinolysin
PfamA32U 1-143 -20.300 12  PF14905.6; E6X881_CELAD/375-789; Outer membrane protein beta-barrel family
SCOP207 1-145 -10.900 d2x55a1 f.4.4.0 (A:4-292) automated matches {Yersinia pestis [TaxId: 632]}
VFDB 1-145 -11.200 [M] COG4571 Outer membrane protease
20 HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709; 112 COG1018 3-57 -7.680 17  [K] COG5149 Transcription initiation factor IIA, large chain
CSGID 3-46 -5.510 IDP06373 gene: ORF17.5; ORF17.5 [Human herpesvirus 8] YP_001129370 [Human herpesvirus 8]
H.sapiens 17-48 -9.050 36  sp|Q05209|PTN12_HUMAN Tyrosine-protein phosphatase non-receptor type 12 OS=Homo sapiens GN=PTPN12 PE=1 SV=3 (Range: 601-780)
HGM_OVER 25-112 -8.160 20  PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;
NEW_HUMAN_DOMAINS 2-51 -6.450 22  sp|Q9P212|PLCE1_HUMAN 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase epsilon-1 OS=Homo sapiens GN=PLCE1 PE=1 SV=3 (Range: 185-483)
PDB1018 5-45 -8.660 12  1ign_A mol:protein length:246 PROTEIN (RAP1)
PfamA32U 8-100 -45.500 33  PF16479.5; Q5L9L8_BACFN/5-97; Domain of unknown function (DUF5056 topsan)
SCOP207 9-95 -6.990 12  d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}
VFDB 3-57 -7.680 17  [K] COG5149 Transcription initiation factor IIA, large chain


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lukasz Jaroszewski, Zhanwen Li, S. Sri Krishna, Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik, Exploration of Uncharted Regions of the Protein Universe. Plos Biology. 2009 Sep. 7(9):e1000205