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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 182next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508; 217 PDB1018 16-217 -72.400 18  4l7t_A mol:protein length:523 NanU sialic acid binding protein
2 HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920; 360 PDB1018 1-355 -56.900 17  5k6l_A mol:protein length:921 B-GLUCOSIDASE
3 HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000; 81 PDB1018 1-81 -22.200 43  5t3r_D mol:protein length:1041 SusC homolog
4 HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074; 227 PDB1018 2-163 -6.990 2c41_A mol:protein length:158 DPS FAMILY DNA-BINDING STRESS RESPONSE PROTEIN
5 HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833; 173 PDB1018 1-173 -45.500 13  4pu3_A mol:protein length:454 Toxin-antitoxin system toxin HipA family
6 HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473; 223 PDB1018 4-194 -16.300 14  1zel_A mol:protein length:298 hypothetical protein Rv2827c
7 HGC00248 gi|162576253|dbj|BAAV01029229.1|2.0 TMP00024; 121 PDB1018 31-120 -7.710 2m0q_A mol:protein length:123 Potassium voltage-gated channel subfamily E member 2
8 HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066; 164 PDB1018 1-127 -6.500 13  1i1q_B mol:protein length:192 ANTHRANILATE SYNTHASE COMPONENT II
9 HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178; 122 PDB1018 2-49 -6.670 16  5aj3_n mol:protein length:199 MITORIBOSOMAL PROTEIN MS38, MRPS38
10 HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304; 200 PDB1018 8-200 -7.480 14  4d10_G mol:protein length:222 COP9 SIGNALOSOME COMPLEX SUBUNIT 7A
11 HGC00422 gi|163631722|dbj|BABG01004545.1|2.0 TMP00397; 274 PDB1018 145-201 -9.160 11  2rng_A mol:protein length:79 Big defensin
12 HGC00429 gi|162734516|dbj|BAAZ01029480.1|1.0 TMP00411; 255 PDB1018 5-63 -6.360 11  2krs_A mol:protein length:74 Probable enterotoxin
13 HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523; 127 PDB1018 10-125 -7.230 11  3wpu_A mol:protein length:542 Beta-fructofuranosidase
14 HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561; 136 PDB1018 32-118 -9.190 11  1kib_A mol:protein length:89 cytochrome c6
15 HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574; 92 PDB1018 1-90 -39.000 30  5yrz_A mol:protein length:152 HicB
16 HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580; 203 PDB1018 2-176 -10.900 12  4nkt_A mol:protein length:341 Poly(A) RNA polymerase protein cid1
17 HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636; 115 PDB1018 24-106 -6.840 10  1ux6_A mol:protein length:350 THROMBOSPONDIN-1
18 HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669; 125 PDB1018 55-118 -27.000 20  1j9i_A mol:protein length:68 TERMINASE SMALL SUBUNIT
19 HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679; 172 PDB1018 1-148 -14.700 4dcb_A mol:protein length:297 Coagulase/fibrinolysin
20 HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709; 112 PDB1018 5-45 -8.660 12  1ign_A mol:protein length:246 PROTEIN (RAP1)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.