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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 182next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508; 217 PfamA32U 29-217 -45.100 17  PF14322.6; R6MDM1_9BACE/22-224; Starch-binding associating with outer membrane
2 HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920; 360 PfamA32U 41-168 -9.820 14  PF16116.5; R6Y5S7_9BACT/235-498; Domain of unknown function (DUF4832 topsan)
91-171 -24.800 22  PF14310.6; Q2TYS6_ASPOR/716-785; Fibronectin type III-like domain
3 HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000; 81 PfamA32U 1-63 -8.000 10  PF07055.12; C6CTR2_PAESJ/323-385; Enoyl reductase FAD binding domain
4 HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074; 227 PfamA32U 1-57 -6.770 PF00447.17; U5GYQ9_USTV1/99-205; HSF-type DNA-binding
5 HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833; 173 PfamA32U 6-121 -60.000 39  PF13657.6; D4J1A9_BUTFI/5-120; HipA N-terminal domain
6 HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473; 223 PfamA32U 5-91 -23.400 PF17194.4; K9SQ68_9CYAN/5-97; Transcriptional regulator, AbiEi antitoxin N-terminal domain
71-192 -13.100 16  PF09407.10; B9M298_GEODF/67-209; AbiEi antitoxin C-terminal domain
7 HGC00248 gi|162576253|dbj|BAAV01029229.1|2.0 TMP00024; 121 PfamA32U 96-121 -7.250 PF11078.8; E0VMZ7_PEDHC/97-177; Optomotor-blind protein N-terminal region
8 HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066; 164 PfamA32U 16-106 -45.200 52  PF12957.7; R6MF37_9FIRM/540-630; Domain of unknown function (DUF3846 topsan)
9 HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178; 122 PfamA32U 6-89 -41.600 32  PF12958.7; D4JA63_9FIRM/5-85; Protein of unknown function (DUF3847 topsan)
10 HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304; 200 PfamA32U 3-183 -43.300 43  PF13310.6; L0KVS2_METHD/69-326; Virulence protein RhuM family
11 HGC00422 gi|163631722|dbj|BABG01004545.1|2.0 TMP00397; 274 PfamA32U 8-102 -37.100 28  PF12959.7; R5RLB6_9FIRM/10-104; Protein of unknown function (DUF3848 topsan)
113-235 -69.000 40  PF12960.7; L0F7B8_DESDL/8-136; Protein of unknown function (DUF3849 topsan)
12 HGC00429 gi|162734516|dbj|BAAZ01029480.1|1.0 TMP00411; 255 PfamA32U 86-155 -40.200 44  PF18789.1; A0A1V4IJF0_9CLOT/81-149; Defence against restriction A C-terminal
13 HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523; 127 PfamA32U 3-127 -96.500 61  PF12962.7; R5QVW0_9FIRM/1-126; Protein of unknown function (DUF3851 topsan)
14 HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561; 136 PfamA32U 43-95 -9.360 30  PF12958.7; D4JA63_9FIRM/5-85; Protein of unknown function (DUF3847 topsan)
15 HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574; 92 PfamA32U 1-85 -32.800 21  PF15919.5; E1VAV2_HALED/3-129; HicB_like antitoxin of bacterial toxin-antitoxin system
16 HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580; 203 PfamA32U 1-197 -11.100 10  PF04928.17; A0A015KEX5_9GLOM/12-355; Poly(A) polymerase central domain
27-177 -18.400 11  PF14091.6; B0C3V0_ACAM1/8-156; Domain of unknown function (DUF4269 topsan)
17 HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636; 115 PfamA32U 8-113 -80.000 65  PF12963.7; R7EKX0_9FIRM/6-110; Protein of unknown function (DUF3852 topsan)
18 HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669; 125 PfamA32U 7-106 -45.400 27  PF12964.7; D6D3K5_9BACE/4-98; Protein of unknown function (DUF3853 topsan)
19 HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679; 172 PfamA32U 1-143 -20.300 12  PF14905.6; E6X881_CELAD/375-789; Outer membrane protein beta-barrel family
20 HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709; 112 PfamA32U 8-100 -45.500 33  PF16479.5; Q5L9L8_BACFN/5-97; Domain of unknown function (DUF5056 topsan)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.