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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 182next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508; 217 SCOP207 24-217 -48.400 14  d3ckca_ a.118.8.6 (A:) Starch utilization system protein SusD {Bacteroides thetaiotaomicron [TaxId: 818]}
2 HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920; 360 SCOP207 1-46 -15.500 23  d2x42a2 c.23.11.1 (A:320-599) Beta-glucosidase middle domain {Thermotoga neapolitana [TaxId: 309803]}
47-185 -47.400 27  d2x42a3 b.1.31.1 (A:600-721) Beta-glucosidase C-terminal domain {Thermotoga neapolitana [TaxId: 309803]}
3 HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000; 81 SCOP207 4-50 -6.730 25  d2eyqa1 b.34.18.1 (A:466-545) Transcription-repair coupling factor, RRCF, middle domain {Escherichia coli [TaxId: 562]}
4 HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074; 227 SCOP207 3-150 -6.340 d2cf7a_ a.25.1.1 (A:) automated matches {Streptococcus suis [TaxId: 1307]}
5 HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833; 173 SCOP207 5-173 -40.000 15  d3dnua_ d.144.1.7 (A:) Multidrug tolerance (MDT) protein HipA N-terminal domain {Escherichia coli K-12 [TaxId: 83333]}
6 HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473; 223 SCOP207 66-211 -13.000 15  d1zela2 d.377.1.1 (A:83-294) Hypothetical protein Rv2827c {Mycobacterium tuberculosis [TaxId: 1773]}
7 HGC00248 gi|162576253|dbj|BAAV01029229.1|2.0 TMP00024; 121 SCOP207 32-114 -6.900 d1n4wa2 d.16.1.1 (A:319-450) Cholesterol oxidase {Streptomyces sp. [TaxId: 1931]}
8 HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066; 164 SCOP207 8-110 -6.890 10  d3w5ha2 c.25.1.1 (A:1126-1272) cytochrome b5 reductase {Pig (Sus scrofa), liver [TaxId: 9823]}
9 HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178; 122 SCOP207 3-63 -7.380 d1ljoa1 b.38.1.1 (A:3-75) Archaeal homoheptameric Sm protein {Archaeoglobus fulgidus, AF-Sm2 [TaxId: 2234]}
10 HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304; 200 SCOP207 19-181 -6.560 13  d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
11 HGC00422 gi|163631722|dbj|BABG01004545.1|2.0 TMP00397; 274 SCOP207 98-241 -6.570 12  d1tzva_ a.79.1.1 (A:) Antitermination factor NusB {Thermotoga maritima [TaxId: 2336]}
12 HGC00429 gi|162734516|dbj|BAAZ01029480.1|1.0 TMP00411; 255 SCOP207 2-52 -5.630 d1h6ta1 b.1.18.15 (A:241-321) Internalin B {Listeria monocytogenes [TaxId: 1639]}
13 HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523; 127 SCOP207 18-92 -6.920 d1u5tb1 a.4.5.54 (B:396-489) Vacuolar protein sorting-associated protein VPS36 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
14 HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561; 136 SCOP207 30-120 -7.500 11  d1ctja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Monoraphidium braunii [TaxId: 34112]}
15 HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574; 92 SCOP207 57-90 -12.800 14  d2cpga_ a.43.1.3 (A:) Transcriptional repressor CopG {Streptococcus agalactiae [TaxId: 1311]}
16 HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580; 203 SCOP207 4-68 -10.200 12  d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}
17 HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636; 115 SCOP207 1-58 -6.660 17  d2ctoa1 a.21.1.0 (A:8-87) automated matches {Human (Homo sapiens) [TaxId: 9606]}
18 HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669; 125 SCOP207 55-118 -27.000 20  d1j9ia_ a.6.1.5 (A:) Terminase gpNU1 subunit domain {Bacteriophage lambda [TaxId: 10710]}
19 HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679; 172 SCOP207 1-145 -10.900 d2x55a1 f.4.4.0 (A:4-292) automated matches {Yersinia pestis [TaxId: 632]}
20 HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709; 112 SCOP207 9-95 -6.990 12  d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.