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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 539next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|108885075|ref|NP_072661.2| DNA polymerase III, beta subunit (MG_001) [Mycoplasma genitalium G37] 380 HGM_OVER 3-358 -4.540 PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]
2 gi|108885076|ref|NP_072662.2| DnaJ domain-containing protein (MG_002) [Mycoplasma genitalium G37] 310 HGM_OVER 5-49 -6.680 17  PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]
3 gi|12044853|ref|NP_072663.1| DNA gyrase subunit B (MG_003) [Mycoplasma genitalium G37] 650 HGM_OVER 396-649 -3.120 PB015879 Q5LJ14_BACFN/120-411 PB015879; Pfam-B_15879;
4 gi|12044854|ref|NP_072664.1| DNA gyrase subunit A (MG_004) [Mycoplasma genitalium G37] 836 HGM_OVER 23-189 -2.010 14  HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;
5 gi|12044855|ref|NP_072665.1| seryl-tRNA synthetase (MG_005) [Mycoplasma genitalium G37] 417 HGM_OVER 213-407 -3.460 10  PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;
6 gi|12044856|ref|NP_072666.1| thymidylate kinase (MG_006) [Mycoplasma genitalium G37] 210 HGM_OVER 85-121 -3.160 16  PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;
7 gi|12044857|ref|NP_072667.1| DNA polymerase III subunit delta' (MG_007) [Mycoplasma genitalium G37] 254 HGM_OVER 76-239 -3.980 11  PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]
8 gi|12044858|ref|NP_072668.1| tRNA modification GTPase TrmE (MG_008) [Mycoplasma genitalium G37] 442 HGM_OVER 9-442 -2.950 10  PB002589 gi|91201099|emb|CAJ74158.1| hypothetical protein [Candidatus Kuenenia stuttgartiensis]
9 gi|12044859|ref|NP_072669.1| TatD family deoxyribonuclease (MG_009) [Mycoplasma genitalium G37] 262 HGM_OVER 115-259 -3.490 12  PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;
10 gi|12044860|ref|NP_072670.1| DNA primase-related protein (MG_010) [Mycoplasma genitalium G37] 218 HGM_OVER 6-159 -3.050 12  PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;
11 gi|12044861|ref|NP_072671.1| hypothetical protein (MG_011) [Mycoplasma genitalium G37] 287 HGM_OVER 187-284 -3.520 16  PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]
12 gi|12044862|ref|NP_072672.1| alpha-L-glutamate ligase (MG_012) [Mycoplasma genitalium G37] 287 HGM_OVER 203-287 -2.890 PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]
13 gi|108885077|ref|NP_072673.2| methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase (MG_013) [Mycoplasma genitalium G37] 273 HGM_OVER 145-272 -3.270 16  PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;
14 gi|12044864|ref|NP_072674.1|(removed signalp:1-25) ABC transporter, ATP-binding/permease protein (MG_014) [Mycoplasma genitalium G37] 598 HGM_OVER 412-595 -3.940 10  HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;
15 gi|12044865|ref|NP_072675.1|(removed signalp:1-25) ABC transporter, ATP-binding/permease protein (MG_015) [Mycoplasma genitalium G37] 564 HGM_OVER 435-543 -4.640 11  PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;
16 gi|108885078|ref|NP_072678.2| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37] (Range: 1-500) 500 HGM_OVER 45-109 -2.830 13  HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
17 gi|108885078|ref|NP_072678.2| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37] (Range: 251-750) 500 HGM_OVER 297-500 -3.750 11  HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;
18 gi|108885078|ref|NP_072678.2| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37] (Range: 501-1000) 500 HGM_OVER 291-433 -3.690 PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]
19 gi|108885078|ref|NP_072678.2| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37] (Range: 751-1031) 281 HGM_OVER 135-281 -4.130 10  PB014033 A5ZI39_9BACE/1-158 PB014033; Pfam-B_14033;
20 gi|12044869|ref|NP_072679.1| chaperone protein DnaJ (MG_019) [Mycoplasma genitalium G37] 389 HGM_OVER 143-235 -4.150 HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;