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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 539next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|108885075|ref|NP_072661.2| DNA polymerase III, beta subunit (MG_001) [Mycoplasma genitalium G37] 380 PDB0516 1-380 -93.300 18  2avt_A mol:protein length:378 DNA polymerase III beta subunit
2 gi|108885076|ref|NP_072662.2| DnaJ domain-containing protein (MG_002) [Mycoplasma genitalium G37] 310 PDB0516 2-309 -72.000 16  3lz8_A mol:protein length:329 Putative chaperone DnaJ
3 gi|12044853|ref|NP_072663.1| DNA gyrase subunit B (MG_003) [Mycoplasma genitalium G37] 650 PDB0516 2-649 -191.000 46  4juo_C mol:protein length:670 DNA topoisomerase 4 subunit B
4 gi|12044854|ref|NP_072664.1| DNA gyrase subunit A (MG_004) [Mycoplasma genitalium G37] 836 PDB0516 12-512 -149.000 52  4ddq_A mol:protein length:502 DNA gyrase subunit A
42-746 -129.000 32  1zvu_A mol:protein length:716 Topoisomerase IV subunit A
512-835 -69.500 32  3uc1_A mol:protein length:327 DNA gyrase subunit A
5 gi|12044855|ref|NP_072665.1| seryl-tRNA synthetase (MG_005) [Mycoplasma genitalium G37] 417 PDB0516 1-417 -135.000 43  2dq3_A mol:protein length:425 Seryl-tRNA synthetase
6 gi|12044856|ref|NP_072666.1| thymidylate kinase (MG_006) [Mycoplasma genitalium G37] 210 PDB0516 1-207 -91.400 27  2ccg_A mol:protein length:225 THYMIDYLATE KINASE
7 gi|12044857|ref|NP_072667.1| DNA polymerase III subunit delta' (MG_007) [Mycoplasma genitalium G37] 254 PDB0516 2-205 -73.500 20  1njf_A mol:protein length:250 DNA polymerase III subunit gamma
2-253 -69.300 17  3glf_B mol:protein length:395 DNA polymerase III subunit tau
8 gi|12044858|ref|NP_072668.1| tRNA modification GTPase TrmE (MG_008) [Mycoplasma genitalium G37] 442 PDB0516 1-442 -129.000 28  3geh_A mol:protein length:462 tRNA modification GTPase mnmE
9 gi|12044859|ref|NP_072669.1| TatD family deoxyribonuclease (MG_009) [Mycoplasma genitalium G37] 262 PDB0516 1-261 -104.000 31  1j6o_A mol:protein length:268 TatD-related deoxyribonuclease
10 gi|12044860|ref|NP_072670.1| DNA primase-related protein (MG_010) [Mycoplasma genitalium G37] 218 PDB0516 1-215 -77.900 18  4e2k_A mol:protein length:329 DNA primase
11 gi|12044861|ref|NP_072671.1| hypothetical protein (MG_011) [Mycoplasma genitalium G37] 287 PDB0516 9-279 -76.000 17  3vpb_A mol:protein length:282 Putative acetylornithine deacetylase
12 gi|12044862|ref|NP_072672.1| alpha-L-glutamate ligase (MG_012) [Mycoplasma genitalium G37] 287 PDB0516 8-287 -75.500 23  4iwx_A mol:protein length:320 Ribosomal protein S6 modification protein
13 gi|108885077|ref|NP_072673.2| methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase (MG_013) [Mycoplasma genitalium G37] 273 PDB0516 2-267 -117.000 30  3p2o_A mol:protein length:285 Bifunctional protein folD
14 gi|12044864|ref|NP_072674.1|(removed signalp:1-25) ABC transporter, ATP-binding/permease protein (MG_014) [Mycoplasma genitalium G37] 598 PDB0516 1-596 -142.000 30  4q4j_A mol:protein length:587 ABC transporter
15 gi|12044865|ref|NP_072675.1|(removed signalp:1-25) ABC transporter, ATP-binding/permease protein (MG_015) [Mycoplasma genitalium G37] 564 PDB0516 3-564 -157.000 34  3qf4_B mol:protein length:598 Uncharacterized ABC transporter ATP-binding p
16 gi|108885078|ref|NP_072678.2| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37] (Range: 1-500) 500 PDB0516 277-500 -7.120 11  2fgt_A mol:protein length:417 Two-component system yycF/yycG regulatory pro
17 gi|108885078|ref|NP_072678.2| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37] (Range: 251-750) 500 PDB0516 119-499 -10.300 10  4a2w_A mol:protein length:936 RETINOIC ACID INDUCIBLE PROTEIN I
204-500 -21.600 15  4s20_K mol:protein length:974 RNA polymerase-associated protein RapA
317-500 -46.000 41  1z63_A mol:protein length:500 Helicase of the snf2/rad54 family
18 gi|108885078|ref|NP_072678.2| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37] (Range: 501-1000) 500 PDB0516 67-499 -101.000 37  1z63_A mol:protein length:500 Helicase of the snf2/rad54 family
19 gi|108885078|ref|NP_072678.2| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37] (Range: 751-1031) 281 PDB0516 27-281 -83.400 33  1z5z_A mol:protein length:271 Helicase of the snf2/rad54 family
20 gi|12044869|ref|NP_072679.1| chaperone protein DnaJ (MG_019) [Mycoplasma genitalium G37] 389 PDB0516 1-375 -85.000 23  3lz8_A mol:protein length:329 Putative chaperone DnaJ


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zmasek CM, Zhang Q, Ye Y, Godzik A. Surprising complexity of the ancestral apoptosis network. Genome Biol. 2007 Oct 24;8(10):R226 [Epub ahead of print]