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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 539next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|108885075|ref|NP_072661.2| DNA polymerase III, beta subunit (MG_001) [Mycoplasma genitalium G37] 380 PDB1018 1-380 -95.800 21  4tr6_A mol:protein length:380 DNA polymerase III subunit beta
2 gi|108885076|ref|NP_072662.2| DnaJ domain-containing protein (MG_002) [Mycoplasma genitalium G37] 310 PDB1018 2-309 -78.000 17  3lz8_A mol:protein length:329 Putative chaperone DnaJ
3 gi|12044853|ref|NP_072663.1| DNA gyrase subunit B (MG_003) [Mycoplasma genitalium G37] 650 PDB1018 2-650 -181.000 44  4juo_C mol:protein length:670 DNA topoisomerase 4 subunit B
4 gi|12044854|ref|NP_072664.1| DNA gyrase subunit A (MG_004) [Mycoplasma genitalium G37] 836 PDB1018 1-497 -116.000 41  4i3h_A mol:protein length:1144 Topoisomerase IV subunit B, DNA topoisomerase 4 subunit A chimera
42-762 -123.000 31  1zvu_A mol:protein length:716 Topoisomerase IV subunit A
512-817 -38.100 38  1zi0_A mol:protein length:307 DNA gyrase subunit A
5 gi|12044855|ref|NP_072665.1| seryl-tRNA synthetase (MG_005) [Mycoplasma genitalium G37] 417 PDB1018 1-416 -127.000 43  2dq3_A mol:protein length:425 Seryl-tRNA synthetase
6 gi|12044856|ref|NP_072666.1| thymidylate kinase (MG_006) [Mycoplasma genitalium G37] 210 PDB1018 1-204 -89.700 30  3v9p_A mol:protein length:227 Thymidylate kinase
7 gi|12044857|ref|NP_072667.1| DNA polymerase III subunit delta' (MG_007) [Mycoplasma genitalium G37] 254 PDB1018 2-205 -88.700 20  1njf_A mol:protein length:250 DNA polymerase III subunit gamma
2-254 -83.800 17  3glf_B mol:protein length:395 DNA polymerase III subunit tau
8 gi|12044858|ref|NP_072668.1| tRNA modification GTPase TrmE (MG_008) [Mycoplasma genitalium G37] 442 PDB1018 2-442 -119.000 26  3gee_A mol:protein length:476 tRNA modification GTPase mnmE
9 gi|12044859|ref|NP_072669.1| TatD family deoxyribonuclease (MG_009) [Mycoplasma genitalium G37] 262 PDB1018 1-261 -104.000 31  1j6o_A mol:protein length:268 TatD-related deoxyribonuclease
10 gi|12044860|ref|NP_072670.1| DNA primase-related protein (MG_010) [Mycoplasma genitalium G37] 218 PDB1018 2-218 -75.900 18  5guj_A mol:protein length:324 DNA primase
11 gi|12044861|ref|NP_072671.1| hypothetical protein (MG_011) [Mycoplasma genitalium G37] 287 PDB1018 9-279 -78.700 16  3vpb_A mol:protein length:282 Putative acetylornithine deacetylase
12 gi|12044862|ref|NP_072672.1| alpha-L-glutamate ligase (MG_012) [Mycoplasma genitalium G37] 287 PDB1018 1-287 -71.200 19  3vpb_A mol:protein length:282 Putative acetylornithine deacetylase
13 gi|108885077|ref|NP_072673.2| methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase (MG_013) [Mycoplasma genitalium G37] 273 PDB1018 2-267 -106.000 30  3p2o_A mol:protein length:285 Bifunctional protein folD
14 gi|12044864|ref|NP_072674.1|(removed signalp:1-25) ABC transporter, ATP-binding/permease protein (MG_014) [Mycoplasma genitalium G37] 598 PDB1018 1-595 -123.000 24  3qf4_B mol:protein length:598 Uncharacterized ABC transporter ATP-binding protein TM_0288
15 gi|12044865|ref|NP_072675.1|(removed signalp:1-25) ABC transporter, ATP-binding/permease protein (MG_015) [Mycoplasma genitalium G37] 564 PDB1018 3-564 -139.000 33  3qf4_B mol:protein length:598 Uncharacterized ABC transporter ATP-binding protein TM_0288
16 gi|108885078|ref|NP_072678.2| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37] (Range: 1-500) 500 PDB1018 9-82 -7.160 20  6dex_B mol:protein length:201 Suppressor of hydroxyurea sensitivity protein 2
17 gi|108885078|ref|NP_072678.2| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37] (Range: 251-750) 500 PDB1018 127-496 -11.700 11  4xqk_A mol:protein length:1578 LlaBIII
198-500 -35.700 14  4s20_K mol:protein length:974 RNA polymerase-associated protein RapA
300-500 -57.700 38  1z63_A mol:protein length:500 Helicase of the snf2/rad54 family
18 gi|108885078|ref|NP_072678.2| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37] (Range: 501-1000) 500 PDB1018 2-130 -26.300 14  5lzp_1 mol:protein length:180 Bacterial proteasome activator
50-500 -129.000 36  1z63_A mol:protein length:500 Helicase of the snf2/rad54 family
19 gi|108885078|ref|NP_072678.2| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37] (Range: 751-1031) 281 PDB1018 27-281 -95.800 34  1z5z_A mol:protein length:271 Helicase of the snf2/rad54 family
20 gi|12044869|ref|NP_072679.1| chaperone protein DnaJ (MG_019) [Mycoplasma genitalium G37] 389 PDB1018 2-377 -92.000 23  3lz8_A mol:protein length:329 Putative chaperone DnaJ


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.