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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 539next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|108885075|ref|NP_072661.2| DNA polymerase III, beta subunit (MG_001) [Mycoplasma genitalium G37] 380 PfamA32U 1-120 -43.600 20  PF00712.19; DPO3B_CAUVC/1-121; DNA polymerase III beta subunit, N-terminal domain
135-256 -39.300 12  PF02767.16; DPO3B_PSEPK/129-244; DNA polymerase III beta subunit, central domain
258-380 -52.600 29  PF02768.15; DPO3B_BACSU/253-376; DNA polymerase III beta subunit, C-terminal domain
2 gi|108885076|ref|NP_072662.2| DnaJ domain-containing protein (MG_002) [Mycoplasma genitalium G37] 310 PfamA32U 2-61 -35.800 46  PF00226.31; Q22028_CAEEL/17-79; DnaJ domain
121-309 -51.700 10  PF01556.18; T0NBZ6_9EURY/129-343; DnaJ C terminal domain
3 gi|12044853|ref|NP_072663.1| DNA gyrase subunit B (MG_003) [Mycoplasma genitalium G37] 650 PfamA32U 39-144 -13.700 18  PF13589.6; A5G4D8_GEOUR/22-165; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
228-408 -58.000 39  PF00204.25; A9KS52_LACP7/226-396; DNA gyrase B
546-645 -30.000 17  PF16898.5; K5XBZ3_PHACS/641-767; C-terminal associated domain of TOPRIM
577-639 -31.100 63  PF00986.21; M9X0E0_MANHA/738-800; DNA gyrase B subunit, carboxyl terminus
4 gi|12044854|ref|NP_072664.1| DNA gyrase subunit A (MG_004) [Mycoplasma genitalium G37] 836 PfamA32U 44-477 -61.100 19  PF00521.20; A0A0D1DXS4_USTMA/785-1232; DNA gyrase/topoisomerase IV, subunit A
5 gi|12044855|ref|NP_072665.1| seryl-tRNA synthetase (MG_005) [Mycoplasma genitalium G37] 417 PfamA32U 1-104 -29.100 21  PF02403.22; C5WTV8_SORBI/1-114; Seryl-tRNA synthetase N-terminal domain
212-394 -13.500 18  PF00587.25; SYT_ECOLI/318-529; tRNA synthetase class II core domain (G, H, P, S and T)
6 gi|12044856|ref|NP_072666.1| thymidylate kinase (MG_006) [Mycoplasma genitalium G37] 210 PfamA32U 9-197 -84.800 34  PF02223.17; KTHY_BACSU/8-199; Thymidylate kinase
7 gi|12044857|ref|NP_072667.1| DNA polymerase III subunit delta' (MG_007) [Mycoplasma genitalium G37] 254 PfamA32U 2-143 -72.100 23  PF13177.6; A5VIC8_LACRD/13-171; DNA polymerase III, delta subunit
2-222 -22.800 PF05673.13; Q0K6N5_CUPNH/29-287; Protein of unknown function (DUF815 topsan)
194-254 -9.830 PF12169.8; Q11B01_CHESB/247-389; DNA polymerase III subunits gamma and tau domain III
8 gi|12044858|ref|NP_072668.1| tRNA modification GTPase TrmE (MG_008) [Mycoplasma genitalium G37] 442 PfamA32U 6-121 -56.500 40  PF10396.9; A4CKF7_ROBBH/5-124; GTP-binding protein TrmE N-terminus
124-439 -82.400 26  PF12631.7; D5XDU4_THEPJ/127-455; MnmE helical domain
9 gi|12044859|ref|NP_072669.1| TatD family deoxyribonuclease (MG_009) [Mycoplasma genitalium G37] 262 PfamA32U 4-260 -102.000 29  PF01026.21; Y454_HAEIN/4-256; TatD related DNase
10 gi|12044860|ref|NP_072670.1| DNA primase-related protein (MG_010) [Mycoplasma genitalium G37] 218 PfamA32U 2-106 -40.700 10  PF08275.11; Q8F416_LEPIN/119-248; DNA primase catalytic core, N-terminal domain
114-201 -42.100 22  PF13155.6; Q8EPY5_OCEIH/263-348; Toprim-like
11 gi|12044861|ref|NP_072671.1| hypothetical protein (MG_011) [Mycoplasma genitalium G37] 287 PfamA32U 9-91 -15.500 PF18030.1; D3SB52_THISK/1-94; RimK PreATP-grasp domain
94-273 -68.400 19  PF08443.11; RIMK_HAEIN/105-293; RimK-like ATP-grasp domain
12 gi|12044862|ref|NP_072672.1| alpha-L-glutamate ligase (MG_012) [Mycoplasma genitalium G37] 287 PfamA32U 1-87 -14.900 19  PF18030.1; D3SB52_THISK/1-94; RimK PreATP-grasp domain
90-287 -66.500 23  PF08443.11; RIMK_HAEIN/105-293; RimK-like ATP-grasp domain
13 gi|108885077|ref|NP_072673.2| methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase (MG_013) [Mycoplasma genitalium G37] 273 PfamA32U 2-111 -49.500 31  PF00763.23; FOLD_BACSK/6-121; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
114-264 -68.800 23  PF02882.19; FOLD1_ARATH/184-349; Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
14 gi|12044864|ref|NP_072674.1|(removed signalp:1-25) ABC transporter, ATP-binding/permease protein (MG_014) [Mycoplasma genitalium G37] 598 PfamA32U 16-296 -11.300 15  PF00664.23; ABCC8_CRICR/318-590; ABC transporter transmembrane region
306-577 -18.600 13  PF09818.9; Q10V01_TRIEI/4-493; Predicted ATPase of the ABC class
358-517 -29.300 22  PF00005.27; YTFR_ECOLI/25-174; ABC transporter
15 gi|12044865|ref|NP_072675.1|(removed signalp:1-25) ABC transporter, ATP-binding/permease protein (MG_015) [Mycoplasma genitalium G37] 564 PfamA32U 44-282 -9.910 16  PF00664.23; ABCC8_CRICR/318-590; ABC transporter transmembrane region
284-552 -19.800 13  PF09818.9; Q10V01_TRIEI/4-493; Predicted ATPase of the ABC class
343-492 -30.000 28  PF00005.27; YTFR_ECOLI/25-174; ABC transporter
16 gi|108885078|ref|NP_072678.2| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37] (Range: 1-500) 500 PfamA32U 45-84 -12.000 42  PF04434.17; Y020_MYCPN/46-86; SWIM zinc finger
17 gi|108885078|ref|NP_072678.2| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37] (Range: 251-750) 500 PfamA32U 5-321 -23.900 10  PF08455.10; R4KHE0_9FIRM/244-621; Bacterial SNF2 helicase associated
331-500 -46.100 29  PF00176.23; RAD54_SCHPO/267-575; SNF2 family N-terminal domain
18 gi|108885078|ref|NP_072678.2| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37] (Range: 501-1000) 500 PfamA32U 81-354 -66.600 28  PF00176.23; RAD54_SCHPO/267-575; SNF2 family N-terminal domain
326-500 -41.600 15  PF16203.5; Q0UAJ3_PHANO/498-753; ERCC3/RAD25/XPB C-terminal helicase
19 gi|108885078|ref|NP_072678.2| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37] (Range: 751-1031) 281 PfamA32U 1-104 -18.000 28  PF00176.23; RAD54_SCHPO/267-575; SNF2 family N-terminal domain
76-281 -48.800 14  PF16203.5; Q0UAJ3_PHANO/498-753; ERCC3/RAD25/XPB C-terminal helicase
20 gi|12044869|ref|NP_072679.1| chaperone protein DnaJ (MG_019) [Mycoplasma genitalium G37] 389 PfamA32U 7-74 -37.500 52  PF00226.31; Q22028_CAEEL/17-79; DnaJ domain
30-226 -9.660 11  PF05458.12; SIVA_HUMAN/1-175; Cd27 binding protein (Siva)
137-355 -77.900 28  PF01556.18; T0NBZ6_9EURY/129-343; DnaJ C terminal domain


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.