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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 689next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|13507740|ref|NP_109689.1| DNA polymerase III beta subunit MPN001 [Mycoplasma pneumoniae M129] 380 PDB1018 1-380 -96.900 21  4tr6_A mol:protein length:380 DNA polymerase III subunit beta
2 gi|13507741|ref|NP_109690.1| DnaJ domain-containing protein MPN002 [Mycoplasma pneumoniae M129] 309 PDB1018 2-299 -79.500 20  4j80_A mol:protein length:284 Chaperone protein DnaJ 2
3 gi|13507742|ref|NP_109691.1| DNA gyrase subunit B MPN003 [Mycoplasma pneumoniae M129] 650 PDB1018 2-650 -182.000 44  4juo_C mol:protein length:670 DNA topoisomerase 4 subunit B
4 gi|13507743|ref|NP_109692.1| DNA gyrase subunit A MPN004 [Mycoplasma pneumoniae M129] 839 PDB1018 1-499 -120.000 42  4i3h_A mol:protein length:1144 Topoisomerase IV subunit B, DNA topoisomerase 4 subunit A chimera
42-762 -124.000 31  1zvu_A mol:protein length:716 Topoisomerase IV subunit A
507-816 -38.400 26  1suu_A mol:protein length:312 DNA gyrase subunit A
5 gi|13507744|ref|NP_109693.1| seryl-tRNA synthetase MPN005 [Mycoplasma pneumoniae M129] 420 PDB1018 1-419 -128.000 43  2dq3_A mol:protein length:425 Seryl-tRNA synthetase
6 gi|13507745|ref|NP_109694.1| thymidylate kinase MPN006 [Mycoplasma pneumoniae M129] 210 PDB1018 2-207 -89.800 27  2ccg_A mol:protein length:225 THYMIDYLATE KINASE
7 gi|13507746|ref|NP_109695.1| DNA polymerase III subunit delta' MPN007 [Mycoplasma pneumoniae M129] 253 PDB1018 2-204 -90.700 20  1njf_A mol:protein length:250 DNA polymerase III subunit gamma
2-251 -83.700 18  3glf_B mol:protein length:395 DNA polymerase III subunit tau
8 gi|13507747|ref|NP_109696.1| tRNA modification GTPase TrmE MPN008 [Mycoplasma pneumoniae M129] 442 PDB1018 2-442 -119.000 31  1xzp_A mol:protein length:482 Probable tRNA modification GTPase trmE
9 gi|13507748|ref|NP_109697.1| hydrolase MPN009 [Mycoplasma pneumoniae M129] 261 PDB1018 1-261 -104.000 29  1j6o_A mol:protein length:268 TatD-related deoxyribonuclease
10 gi|13507749|ref|NP_109698.1| hypothetical protein MPN010 [Mycoplasma pneumoniae M129] 131 PDB1018 46-130 -39.000 100  2ba2_A mol:protein length:85 Hypothetical UPF0134 protein MPN010
11 gi|13507750|ref|NP_109699.1|(removed signal:1-26) hypothetical protein MPN011 [Mycoplasma pneumoniae M129] 205 PDB1018 6-58 -6.640 18  3viq_A mol:protein length:122 Swi5-dependent recombination DNA repair protein 1
12 gi|13507751|ref|NP_109700.1|(removed signal:1-21) hypothetical protein MPN012 [Mycoplasma pneumoniae M129] 214 PDB1018 10-62 -6.570 17  3viq_A mol:protein length:122 Swi5-dependent recombination DNA repair protein 1
13 gi|13507752|ref|NP_109701.1| hypothetical protein MPN013 [Mycoplasma pneumoniae M129] 257 PDB1018 2-131 -11.400 18  1i3q_A mol:protein length:1733 DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
2-257 -10.900 5ife_C mol:protein length:1304 Splicing factor 3B subunit 1
43-126 -29.800 25  1wck_A mol:protein length:220 BCLA PROTEIN
44-160 -26.400 12  4hsi_A mol:protein length:703 Envelope glycoprotein B
14 gi|13507753|ref|NP_109702.1| hypothetical protein MPN014 [Mycoplasma pneumoniae M129] 212 PDB1018 2-212 -79.200 21  4e2k_A mol:protein length:329 DNA primase
15 gi|13507754|ref|NP_109703.1| hypothetical protein MPN015 [Mycoplasma pneumoniae M129] 285 PDB1018 9-277 -77.000 16  3vpb_A mol:protein length:282 Putative acetylornithine deacetylase
16 gi|13507755|ref|NP_109704.1| ribosomal S6 modification protein MPN016 [Mycoplasma pneumoniae M129] 288 PDB1018 1-288 -71.500 18  3vpb_A mol:protein length:282 Putative acetylornithine deacetylase
17 gi|13507756|ref|NP_109705.1| 5,10-methylene-tetrahydrofolate dehydrogenase MPN017 [Mycoplasma pneumoniae M129] 269 PDB1018 2-267 -105.000 28  3p2o_A mol:protein length:285 Bifunctional protein folD
18 gi|13507757|ref|NP_109706.1|(removed signal:1-25) transport ATP-binding protein MPN018 [Mycoplasma pneumoniae M129] 598 PDB1018 1-596 -123.000 30  4q4j_A mol:protein length:587 ABC transporter
19 gi|13507758|ref|NP_109707.1| transport ATP-binding protein MPN019 [Mycoplasma pneumoniae M129] 634 PDB1018 25-634 -146.000 33  3qf4_B mol:protein length:598 Uncharacterized ABC transporter ATP-binding protein TM_0288
20 gi|13507759|ref|NP_109708.1| helicases MPN020 [Mycoplasma pneumoniae M129] 1030 PDB1018 378-1023 -19.700 12  4xqk_A mol:protein length:1578 LlaBIII
449-1030 -59.400 14  4s20_K mol:protein length:974 RNA polymerase-associated protein RapA
500-1030 -93.500 28  5vvr_M mol:protein length:1085 DNA repair and recombination protein RAD26
549-1030 -100.000 36  1z63_A mol:protein length:500 Helicase of the snf2/rad54 family

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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.