FFAS03 list of results M.pneumoniae / PfamA30U

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 689 next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|13507740|ref|NP_109689.1| DNA polymerase III beta subunit MPN001 [Mycoplasma pneumoniae M129] 380 PfamA30U 1-120 -43.500 18 PF00712.17; DPO3B_CAUCR/1-121; DNA polymerase III beta subunit, N-terminal domain
135-256 -39.100 12 PF02767.14; DPO3B_PSEPK/129-244; DNA polymerase III beta subunit, central domain
258-380 -55.200 23 PF02768.13; DPO3B_BACSU/253-376; DNA polymerase III beta subunit, C-terminal domain
2 gi|13507741|ref|NP_109690.1| DnaJ domain-containing protein MPN002 [Mycoplasma pneumoniae M129] 309 PfamA30U 2-61 -33.000 43 PF00226.29; Q22028_CAEEL/17-79; DnaJ domain
120-309 -48.200 12 PF01556.16; T0NBZ6_9EURY/129-343; DnaJ C terminal domain
3 gi|13507742|ref|NP_109691.1| DNA gyrase subunit B MPN003 [Mycoplasma pneumoniae M129] 650 PfamA30U 228-407 -82.300 41 PF00204.23; A9KS52_CLOPH/226-396; DNA gyrase B
548-645 -20.100 20 PF16898.3; K5XBZ3_PHACS/641-767; C-terminal associated domain of TOPRIM
577-639 -46.400 63 PF00986.19; M9X0E0_MANHA/738-800; DNA gyrase B subunit, carboxyl terminus
4 gi|13507743|ref|NP_109692.1| DNA gyrase subunit A MPN004 [Mycoplasma pneumoniae M129] 839 PfamA30U 44-483 -63.900 20 PF00521.18; A0A0D1DXS4_USTMA/785-1232; DNA gyrase/topoisomerase IV, subunit A
620-665 -13.200 28 PF03989.11; GYRA_HAEIN/641-686; DNA gyrase C-terminal domain, beta-propeller
5 gi|13507744|ref|NP_109693.1| seryl-tRNA synthetase MPN005 [Mycoplasma pneumoniae M129] 420 PfamA30U 1-103 -24.300 23 PF02403.20; C5WTV8_SORBI/1-114; Seryl-tRNA synthetase N-terminal domain
6 gi|13507745|ref|NP_109694.1| thymidylate kinase MPN006 [Mycoplasma pneumoniae M129] 210 PfamA30U 9-197 -87.700 34 PF02223.15; KTHY_BACSU/8-199; Thymidylate kinase
7 gi|13507746|ref|NP_109695.1| DNA polymerase III subunit delta' MPN007 [Mycoplasma pneumoniae M129] 253 PfamA30U 1-185 -32.300 10 PF06068.11; RUVB2_CAEEL/17-408; TIP49 C-terminus
2-142 -75.400 27 PF13177.4; A5VIC8_LACRD/13-171; DNA polymerase III, delta subunit
5-251 -12.400 11 PF03215.13; RAD24_YEAST/58-575; Rad17 cell cycle checkpoint protein
8 gi|13507747|ref|NP_109696.1| tRNA modification GTPase TrmE MPN008 [Mycoplasma pneumoniae M129] 442 PfamA30U 6-121 -59.200 41 PF10396.7; A4CKF7_ROBBH/5-124; GTP-binding protein TrmE N-terminus
124-439 -92.000 27 PF12631.5; D5XDU4_THEPJ/127-455; MnmE helical domain
9 gi|13507748|ref|NP_109697.1| hydrolase MPN009 [Mycoplasma pneumoniae M129] 261 PfamA30U 4-260 -95.000 29 PF01026.19; Y454_HAEIN/4-256; TatD related DNase
10 gi|13507749|ref|NP_109698.1| hypothetical protein MPN010 [Mycoplasma pneumoniae M129] 131 PfamA30U 37-130 -28.100 43 PF01519.14; Y137_MYCPN/43-170; Protein of unknown function DUF16 topsan
11 gi|13507750|ref|NP_109699.1|(removed signal:1-26) hypothetical protein MPN011 [Mycoplasma pneumoniae M129] 205 PfamA30U 1-82 -39.100 30 PF00938.15; Y643_MYCPN/29-113; Lipoprotein
12 gi|13507751|ref|NP_109700.1|(removed signal:1-21) hypothetical protein MPN012 [Mycoplasma pneumoniae M129] 214 PfamA30U 1-86 -40.300 26 PF00938.15; Y643_MYCPN/29-113; Lipoprotein
13 gi|13507752|ref|NP_109701.1| hypothetical protein MPN013 [Mycoplasma pneumoniae M129] 257 PfamA30U 6-177 -13.600 7 PF05934.9; CLCC1_RAT/3-541; Mid-1-related chloride channel (MCLC)
44-132 -24.600 18 PF15708.3; G7PVG9_MACFA/1-223; Proline-rich protein family 20
171-255 -13.400 27 PF01519.14; Y137_MYCPN/43-170; Protein of unknown function DUF16 topsan
14 gi|13507753|ref|NP_109702.1| hypothetical protein MPN014 [Mycoplasma pneumoniae M129] 212 PfamA30U 2-101 -42.600 15 PF08275.9; Q8F416_LEPIN/119-248; DNA primase catalytic core, N-terminal domain
108-195 -44.200 27 PF13155.4; Q8EPY5_OCEIH/263-348; Toprim-like
15 gi|13507754|ref|NP_109703.1| hypothetical protein MPN015 [Mycoplasma pneumoniae M129] 285 PfamA30U 1-273 -33.600 11 PF05770.9; ITPK1_ORYSJ/37-341; Inositol 1, 3, 4-trisphosphate 5/6-kinase
92-271 -64.600 17 PF08443.9; RIMK_HAEIN/105-293; RimK-like ATP-grasp domain
16 gi|13507755|ref|NP_109704.1| ribosomal S6 modification protein MPN016 [Mycoplasma pneumoniae M129] 288 PfamA30U 6-287 -30.500 12 PF05770.9; ITPK1_ORYSJ/37-341; Inositol 1, 3, 4-trisphosphate 5/6-kinase
90-287 -68.500 24 PF08443.9; RIMK_HAEIN/105-293; RimK-like ATP-grasp domain
17 gi|13507756|ref|NP_109705.1| 5,10-methylene-tetrahydrofolate dehydrogenase MPN017 [Mycoplasma pneumoniae M129] 269 PfamA30U 2-111 -57.100 32 PF00763.21; FOLD_BACSK/6-121; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
121-264 -75.500 27 PF02882.17; FOLD1_ARATH/184-349; Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
18 gi|13507757|ref|NP_109706.1|(removed signal:1-25) transport ATP-binding protein MPN018 [Mycoplasma pneumoniae M129] 598 PfamA30U 1-265 -12.700 12 PF13748.4; G8PNQ8_PSEUV/20-254; ABC transporter transmembrane region
55-307 -10.200 15 PF00664.21; ABCC8_CRICR/318-590; ABC transporter transmembrane region
358-517 -28.400 24 PF00005.25; YTFR_ECOLI/25-174; ABC transporter
19 gi|13507758|ref|NP_109707.1| transport ATP-binding protein MPN019 [Mycoplasma pneumoniae M129] 634 PfamA30U 43-321 -31.400 7 PF13748.4; G8PNQ8_PSEUV/20-254; ABC transporter transmembrane region
413-562 -26.300 29 PF00005.25; YTFR_ECOLI/25-174; ABC transporter
423-606 -11.200 18 PF00625.19; KGUA_ECOLI/4-186; Guanylate kinase
20 gi|13507759|ref|NP_109708.1| helicases MPN020 [Mycoplasma pneumoniae M129] 1030 PfamA30U 179-571 -25.100 13 PF08455.8; R4KHE0_9FIRM/244-621; Bacterial SNF2 helicase associated
581-854 -43.300 29 PF00176.21; RAD54_SCHPO/267-575; SNF2 family N-terminal domain
797-1030 -18.300 11 PF11496.6; Q6FSK5_CANGA/26-299; Class II histone deacetylase complex subunits 2 and 3

FFAS is supported by the NIH grant R01-GM087218-01

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#	Query	Length	Result vs.	Range	Score	%id	Covered by template(s)
1	`gi\|13507740\|ref\|NP_109689.1\| DNA polymerase III beta subunit MPN001 [Mycoplasma pneumoniae M129]`	`380`	`PfamA30U`	`1-120`	`-43.500`	`18`	`PF00712.17; DPO3B_CAUCR/1-121; DNA polymerase III beta subunit, N-terminal domain`
				`135-256`	`-39.100`	`12`	`PF02767.14; DPO3B_PSEPK/129-244; DNA polymerase III beta subunit, central domain`
				`258-380`	`-55.200`	`23`	`PF02768.13; DPO3B_BACSU/253-376; DNA polymerase III beta subunit, C-terminal domain`
2	`gi\|13507741\|ref\|NP_109690.1\| DnaJ domain-containing protein MPN002 [Mycoplasma pneumoniae M129]`	`309`	`PfamA30U`	`2-61`	`-33.000`	`43`	`PF00226.29; Q22028_CAEEL/17-79; DnaJ domain`
				`120-309`	`-48.200`	`12`	`PF01556.16; T0NBZ6_9EURY/129-343; DnaJ C terminal domain`
3	`gi\|13507742\|ref\|NP_109691.1\| DNA gyrase subunit B MPN003 [Mycoplasma pneumoniae M129]`	`650`	`PfamA30U`	`228-407`	`-82.300`	`41`	`PF00204.23; A9KS52_CLOPH/226-396; DNA gyrase B`
				`548-645`	`-20.100`	`20`	`PF16898.3; K5XBZ3_PHACS/641-767; C-terminal associated domain of TOPRIM`
				`577-639`	`-46.400`	`63`	`PF00986.19; M9X0E0_MANHA/738-800; DNA gyrase B subunit, carboxyl terminus`
4	`gi\|13507743\|ref\|NP_109692.1\| DNA gyrase subunit A MPN004 [Mycoplasma pneumoniae M129]`	`839`	`PfamA30U`	`44-483`	`-63.900`	`20`	`PF00521.18; A0A0D1DXS4_USTMA/785-1232; DNA gyrase/topoisomerase IV, subunit A`
				`620-665`	`-13.200`	`28`	`PF03989.11; GYRA_HAEIN/641-686; DNA gyrase C-terminal domain, beta-propeller`
5	`gi\|13507744\|ref\|NP_109693.1\| seryl-tRNA synthetase MPN005 [Mycoplasma pneumoniae M129]`	`420`	`PfamA30U`	`1-103`	`-24.300`	`23`	`PF02403.20; C5WTV8_SORBI/1-114; Seryl-tRNA synthetase N-terminal domain`
6	`gi\|13507745\|ref\|NP_109694.1\| thymidylate kinase MPN006 [Mycoplasma pneumoniae M129]`	`210`	`PfamA30U`	`9-197`	`-87.700`	`34`	`PF02223.15; KTHY_BACSU/8-199; Thymidylate kinase`
7	`gi\|13507746\|ref\|NP_109695.1\| DNA polymerase III subunit delta' MPN007 [Mycoplasma pneumoniae M129]`	`253`	`PfamA30U`	`1-185`	`-32.300`	`10`	`PF06068.11; RUVB2_CAEEL/17-408; TIP49 C-terminus`
				`2-142`	`-75.400`	`27`	`PF13177.4; A5VIC8_LACRD/13-171; DNA polymerase III, delta subunit`
				`5-251`	`-12.400`	`11`	`PF03215.13; RAD24_YEAST/58-575; Rad17 cell cycle checkpoint protein`
8	`gi\|13507747\|ref\|NP_109696.1\| tRNA modification GTPase TrmE MPN008 [Mycoplasma pneumoniae M129]`	`442`	`PfamA30U`	`6-121`	`-59.200`	`41`	`PF10396.7; A4CKF7_ROBBH/5-124; GTP-binding protein TrmE N-terminus`
				`124-439`	`-92.000`	`27`	`PF12631.5; D5XDU4_THEPJ/127-455; MnmE helical domain`
9	`gi\|13507748\|ref\|NP_109697.1\| hydrolase MPN009 [Mycoplasma pneumoniae M129]`	`261`	`PfamA30U`	`4-260`	`-95.000`	`29`	`PF01026.19; Y454_HAEIN/4-256; TatD related DNase`
10	`gi\|13507749\|ref\|NP_109698.1\| hypothetical protein MPN010 [Mycoplasma pneumoniae M129]`	`131`	`PfamA30U`	`37-130`	`-28.100`	`43`	`PF01519.14; Y137_MYCPN/43-170; Protein of unknown function DUF16 topsan`
11	`gi\|13507750\|ref\|NP_109699.1\|(removed signal:1-26) hypothetical protein MPN011 [Mycoplasma pneumoniae M129]`	`205`	`PfamA30U`	`1-82`	`-39.100`	`30`	`PF00938.15; Y643_MYCPN/29-113; Lipoprotein`
12	`gi\|13507751\|ref\|NP_109700.1\|(removed signal:1-21) hypothetical protein MPN012 [Mycoplasma pneumoniae M129]`	`214`	`PfamA30U`	`1-86`	`-40.300`	`26`	`PF00938.15; Y643_MYCPN/29-113; Lipoprotein`
13	`gi\|13507752\|ref\|NP_109701.1\| hypothetical protein MPN013 [Mycoplasma pneumoniae M129]`	`257`	`PfamA30U`	`6-177`	`-13.600`	`7`	`PF05934.9; CLCC1_RAT/3-541; Mid-1-related chloride channel (MCLC)`
				`44-132`	`-24.600`	`18`	`PF15708.3; G7PVG9_MACFA/1-223; Proline-rich protein family 20`
				`171-255`	`-13.400`	`27`	`PF01519.14; Y137_MYCPN/43-170; Protein of unknown function DUF16 topsan`
14	`gi\|13507753\|ref\|NP_109702.1\| hypothetical protein MPN014 [Mycoplasma pneumoniae M129]`	`212`	`PfamA30U`	`2-101`	`-42.600`	`15`	`PF08275.9; Q8F416_LEPIN/119-248; DNA primase catalytic core, N-terminal domain`
				`108-195`	`-44.200`	`27`	`PF13155.4; Q8EPY5_OCEIH/263-348; Toprim-like`
15	`gi\|13507754\|ref\|NP_109703.1\| hypothetical protein MPN015 [Mycoplasma pneumoniae M129]`	`285`	`PfamA30U`	`1-273`	`-33.600`	`11`	`PF05770.9; ITPK1_ORYSJ/37-341; Inositol 1, 3, 4-trisphosphate 5/6-kinase`
				`92-271`	`-64.600`	`17`	`PF08443.9; RIMK_HAEIN/105-293; RimK-like ATP-grasp domain`
16	`gi\|13507755\|ref\|NP_109704.1\| ribosomal S6 modification protein MPN016 [Mycoplasma pneumoniae M129]`	`288`	`PfamA30U`	`6-287`	`-30.500`	`12`	`PF05770.9; ITPK1_ORYSJ/37-341; Inositol 1, 3, 4-trisphosphate 5/6-kinase`
				`90-287`	`-68.500`	`24`	`PF08443.9; RIMK_HAEIN/105-293; RimK-like ATP-grasp domain`
17	`gi\|13507756\|ref\|NP_109705.1\| 5,10-methylene-tetrahydrofolate dehydrogenase MPN017 [Mycoplasma pneumoniae M129]`	`269`	`PfamA30U`	`2-111`	`-57.100`	`32`	`PF00763.21; FOLD_BACSK/6-121; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain`
				`121-264`	`-75.500`	`27`	`PF02882.17; FOLD1_ARATH/184-349; Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain`
18	`gi\|13507757\|ref\|NP_109706.1\|(removed signal:1-25) transport ATP-binding protein MPN018 [Mycoplasma pneumoniae M129]`	`598`	`PfamA30U`	`1-265`	`-12.700`	`12`	`PF13748.4; G8PNQ8_PSEUV/20-254; ABC transporter transmembrane region`
				`55-307`	`-10.200`	`15`	`PF00664.21; ABCC8_CRICR/318-590; ABC transporter transmembrane region`
				`358-517`	`-28.400`	`24`	`PF00005.25; YTFR_ECOLI/25-174; ABC transporter`
19	`gi\|13507758\|ref\|NP_109707.1\| transport ATP-binding protein MPN019 [Mycoplasma pneumoniae M129]`	`634`	`PfamA30U`	`43-321`	`-31.400`	`7`	`PF13748.4; G8PNQ8_PSEUV/20-254; ABC transporter transmembrane region`
				`413-562`	`-26.300`	`29`	`PF00005.25; YTFR_ECOLI/25-174; ABC transporter`
				`423-606`	`-11.200`	`18`	`PF00625.19; KGUA_ECOLI/4-186; Guanylate kinase`
20	`gi\|13507759\|ref\|NP_109708.1\| helicases MPN020 [Mycoplasma pneumoniae M129]`	`1030`	`PfamA30U`	`179-571`	`-25.100`	`13`	`PF08455.8; R4KHE0_9FIRM/244-621; Bacterial SNF2 helicase associated`
				`581-854`	`-43.300`	`29`	`PF00176.21; RAD54_SCHPO/267-575; SNF2 family N-terminal domain`
				`797-1030`	`-18.300`	`11`	`PF11496.6; Q6FSK5_CANGA/26-299; Class II histone deacetylase complex subunits 2 and 3`