current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4372next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15607143|ref|NP_214515.1| chromosomal replication initiation protein (Rv0001) [Mycobacterium tuberculosis H37Rv] 507 PDB1018 12-507 -112.000 31  2z4r_A mol:protein length:440 Chromosomal replication initiator protein dnaA
2 gi|15607144|ref|NP_214516.1| DNA polymerase III subunit beta (Rv0002) [Mycobacterium tuberculosis H37Rv] 402 PDB1018 1-402 -114.000 100  3p16_A mol:protein length:408 DNA polymerase III subunit beta
3 gi|15607145|ref|NP_214517.1| recombination protein F (Rv0003) [Mycobacterium tuberculosis H37Rv] 385 PDB1018 1-377 -103.000 25  5z68_A mol:protein length:373 DNA replication and repair protein RecF
4 gi|15607146|ref|NP_214518.1| hypothetical protein (Rv0004) [Mycobacterium tuberculosis H37Rv] 187 PDB1018 74-143 -8.710 14  3bvc_A mol:protein length:212 Uncharacterized protein Ism_01780
5 gi|15607147|ref|NP_214519.1| DNA gyrase subunit B (Rv0005) [Mycobacterium tuberculosis H37Rv] 714 PDB1018 29-714 -187.000 46  4juo_C mol:protein length:670 DNA topoisomerase 4 subunit B
6 gi|15607148|ref|NP_214520.1| DNA gyrase subunit A (Rv0006) [Mycobacterium tuberculosis H37Rv] 838 PDB1018 1-502 -120.000 99  3ifz_A mol:protein length:508 DNA gyrase subunit A
37-765 -125.000 32  1zvu_A mol:protein length:716 Topoisomerase IV subunit A
512-838 -41.600 99  3uc1_A mol:protein length:327 DNA gyrase subunit A
7 gi|15607149|ref|NP_214521.1| hypothetical protein (Rv0007) [Mycobacterium tuberculosis H37Rv] 304 PDB1018 200-287 -9.060 13  3vou_A mol:protein length:148 Ion transport 2 domain protein, Voltage-gated sodium channel
8 gi|15607150|ref|NP_214522.1| hypothetical protein (Rv0008c) [Mycobacterium tuberculosis H37Rv] 145 PDB1018 2-129 -7.450 14  2ah6_A mol:protein length:208 BH1595, unknown conserved protein
9 gi|15607151|ref|NP_214523.1| iron-regulated peptidyl-prolyl cis-trans isomerase A (Rv0009) [Mycobacterium tuberculosis H37Rv] 182 PDB1018 1-182 -102.000 99  1w74_A mol:protein length:191 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A
10 gi|15607152|ref|NP_214524.1| hypothetical protein (Rv0010c) [Mycobacterium tuberculosis H37Rv] 141 PDB1018 43-141 -7.470 4chj_A mol:protein length:164 IMC SUB-COMPARTMENT PROTEIN ISP3
11 gi|15607153|ref|NP_214525.1| putative septation inhibitor protein (Rv0011c) [Mycobacterium tuberculosis H37Rv] 93 PDB1018 1-93 -81.600 100  2mmu_A mol:protein length:101 Cell division protein CrgA
12 gi|15607154|ref|NP_214526.1| hypothetical protein (Rv0012) [Mycobacterium tuberculosis H37Rv] 262 PDB1018 86-259 -59.300 28  3gmg_A mol:protein length:170 Uncharacterized protein Rv1825/MT1873
13 gi|57116682|ref|YP_177615.1| para-aminobenzoate synthase component II (Rv0013) [Mycobacterium tuberculosis H37Rv] 232 PDB1018 1-205 -83.300 26  2a9v_A mol:protein length:212 GMP synthase
14 gi|15607156|ref|NP_214528.1| transmembrane serine/threonine-protein kinase B PKNB (protein kinase B) (STPK B) (Rv0014c) [Mycobacterium tuberculosis H37Rv] 626 PDB1018 1-308 -112.000 100  1mru_A mol:protein length:311 Probable serine/threonine-protein kinase pknB
4-607 -68.000 11  4ci6_B mol:protein length:643 PROTEIN KINASE YOPO
15 gi|15607157|ref|NP_214529.1| transmembrane serine/threonine-protein kinase A PKNA (protein kinase A) (STPK A) (Rv0015c) [Mycobacterium tuberculosis H37Rv] 431 PDB1018 1-336 -110.000 100  4x3f_A mol:protein length:337 Serine/threonine-protein kinase PknA
2-384 -81.300 20  2pzi_A mol:protein length:681 Probable serine/threonine-protein kinase pknG
16 gi|15607158|ref|NP_214530.1|(removed signalp:1-30) penicillin-binding protein PbpA (Rv0016c) [Mycobacterium tuberculosis H37Rv] 461 PDB1018 1-461 -136.000 99  3lo7_A mol:protein length:483 Penicillin-binding protein A
17 gi|15607159|ref|NP_214531.1|(removed signalp:1-35) cell division protein RodA (Rv0017c) [Mycobacterium tuberculosis H37Rv] 434 PDB1018 36-412 -90.100 28  6bar_A mol:protein length:359 Rod shape determining protein RodA
18 gi|15607160|ref|NP_214532.1| serine/threonine phosphatase (Rv0018c) [Mycobacterium tuberculosis H37Rv] 514 PDB1018 4-240 -89.200 98  1txo_A mol:protein length:237 Putative Bacterial Enzyme
7-276 -30.200 14  3d8k_A mol:protein length:377 Protein phosphatase 2C
19 gi|15607161|ref|NP_214533.1| hypothetical protein (Rv0019c) [Mycobacterium tuberculosis H37Rv] 155 PDB1018 49-154 -50.600 17  1r21_A mol:protein length:128 Antigen Ki-67
20 gi|15607162|ref|NP_214534.1| hypothetical protein (Rv0020c) [Mycobacterium tuberculosis H37Rv] 527 PDB1018 1-132 -37.200 100  2lc0_A mol:protein length:132 Putative uncharacterized protein TB39.8
5-473 -16.700 5ife_C mol:protein length:1304 Splicing factor 3B subunit 1
374-525 -32.500 89  3oun_A mol:protein length:157 Putative uncharacterized protein TB39.8

FFAS is supported by the NIH grant R01-GM087218-01
1 3 3 6 5 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.